Gvermi3133.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3133.t1
Unique NameGvermi3133.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:171914..173029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708251.1
PFAMsTrp_Tyr_perm
Max annot lvl2759|Eukaryota
Evalue1.23e-30
EggNOG OGs2C3E9@1|root,2RZCA@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3133Gvermi3133Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 171914..173029 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3133.t1.stop1Gvermi3133.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 171914..171916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3133.t1.CDS1Gvermi3133.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 171914..173029 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3133.t1.exon1Gvermi3133.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 171914..173029 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3133.t1.start1Gvermi3133.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 173027..173029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3133.t1Gvermi3133.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 171914..173029 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3133.t1 ID=Gvermi3133.t1|Name=Gvermi3133.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp
MLCFISMLVSYGLAGPQAVWQLLTAGPSQSHPPPYVFASYWALGTTAVVF
FVDHLLGVFGSFTVLKGSLFIGVVIIVAALPAAARVSQLTELISDMSGWQ
HTATPFLMACVALGGLANTLPVTYRLLPHKPTPAQVGRYRTAIVLAAVLC
YLLNVGWVFAVLQVVPRDDPTGGPSLTNAYLKGQISTVPLIDALHHGDAV
KGDVLRSIEIIVELFILVSTGVSFFVTAAGMKSFVDGGVHIMSAGVHAAW
KKTLSTVVAYGLSFGLVLVIILANPNGFIAVLTRFSSFTLNLQAGLMLFV
MYLTAKTMRRGLTSIEEGKGSAEGSDSRSIPSAFSPVFGTTATVYGIIFF
TIACLLASVGPFLGIRLGARE*
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spliced messenger RNA

>Gvermi3133.t1 ID=Gvermi3133.t1|Name=Gvermi3133.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at ScGOVlb_41:171914..173029- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTGCTTCATTTCCATGCTCGTTTCGTACGGGCTGGCCGGTCCGCA
GGCCGTGTGGCAGCTTTTGACCGCCGGTCCGTCCCAGTCCCACCCGCCGC
CCTACGTCTTCGCGTCGTACTGGGCTTTGGGAACCACCGCCGTCGTGTTT
TTCGTCGACCACCTGCTGGGCGTTTTCGGCTCCTTCACAGTCCTCAAGGG
CTCCCTGTTCATCGGCGTTGTCATCATTGTCGCCGCCCTCCCCGCCGCCG
CGCGCGTCAGCCAGCTGACCGAGCTCATATCCGACATGTCGGGCTGGCAA
CACACCGCCACCCCGTTTCTCATGGCCTGCGTCGCCCTGGGCGGCCTGGC
CAACACCCTGCCCGTCACCTACCGCCTTTTGCCGCACAAGCCCACGCCGG
CCCAGGTCGGCCGCTACCGCACCGCCATTGTGCTGGCCGCCGTGCTTTGC
TACCTGCTCAACGTCGGCTGGGTGTTCGCCGTTCTGCAGGTTGTGCCGCG
CGACGACCCCACCGGCGGCCCCAGCCTCACCAATGCCTACCTCAAAGGCC
AAATATCCACCGTCCCGCTCATCGACGCCTTGCACCACGGCGACGCCGTC
AAGGGCGATGTGCTGCGCTCCATCGAAATCATCGTCGAGCTTTTCATCCT
CGTGTCCACCGGCGTCAGCTTCTTTGTCACGGCCGCTGGCATGAAGAGCT
TTGTGGATGGCGGCGTGCACATCATGAGCGCCGGCGTGCACGCCGCTTGG
AAGAAAACGCTTTCAACTGTCGTGGCGTACGGGCTGTCGTTTGGCCTCGT
TTTAGTCATCATTTTGGCCAATCCGAACGGATTCATCGCCGTTCTCACCA
GGTTTTCGTCCTTCACACTCAACCTGCAGGCCGGCTTGATGCTCTTCGTC
ATGTACTTGACCGCGAAGACGATGAGACGCGGCTTGACAAGCATTGAGGA
AGGAAAAGGCTCGGCGGAAGGCAGCGACAGTCGCTCCATCCCGTCTGCAT
TTTCTCCCGTCTTCGGAACAACTGCCACTGTGTACGGCATTATTTTCTTT
ACCATAGCCTGTTTACTCGCGTCGGTGGGGCCGTTTCTGGGTATTCGTCT
GGGTGCCAGGGAATGA
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protein sequence of Gvermi3133.t1

>Gvermi3133.t1 ID=Gvermi3133.t1|Name=Gvermi3133.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=372bp
MLCFISMLVSYGLAGPQAVWQLLTAGPSQSHPPPYVFASYWALGTTAVVF
FVDHLLGVFGSFTVLKGSLFIGVVIIVAALPAAARVSQLTELISDMSGWQ
HTATPFLMACVALGGLANTLPVTYRLLPHKPTPAQVGRYRTAIVLAAVLC
YLLNVGWVFAVLQVVPRDDPTGGPSLTNAYLKGQISTVPLIDALHHGDAV
KGDVLRSIEIIVELFILVSTGVSFFVTAAGMKSFVDGGVHIMSAGVHAAW
KKTLSTVVAYGLSFGLVLVIILANPNGFIAVLTRFSSFTLNLQAGLMLFV
MYLTAKTMRRGLTSIEEGKGSAEGSDSRSIPSAFSPVFGTTATVYGIIFF
TIACLLASVGPFLGIRLGARE*
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mRNA from alignment at ScGOVlb_41:171914..173029-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3133.t1 ID=Gvermi3133.t1|Name=Gvermi3133.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at ScGOVlb_41:171914..173029- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTGCTTCATTTCCATGCTCGTTTCGTACGGGCTGGCCGGTCCGCA
GGCCGTGTGGCAGCTTTTGACCGCCGGTCCGTCCCAGTCCCACCCGCCGC
CCTACGTCTTCGCGTCGTACTGGGCTTTGGGAACCACCGCCGTCGTGTTT
TTCGTCGACCACCTGCTGGGCGTTTTCGGCTCCTTCACAGTCCTCAAGGG
CTCCCTGTTCATCGGCGTTGTCATCATTGTCGCCGCCCTCCCCGCCGCCG
CGCGCGTCAGCCAGCTGACCGAGCTCATATCCGACATGTCGGGCTGGCAA
CACACCGCCACCCCGTTTCTCATGGCCTGCGTCGCCCTGGGCGGCCTGGC
CAACACCCTGCCCGTCACCTACCGCCTTTTGCCGCACAAGCCCACGCCGG
CCCAGGTCGGCCGCTACCGCACCGCCATTGTGCTGGCCGCCGTGCTTTGC
TACCTGCTCAACGTCGGCTGGGTGTTCGCCGTTCTGCAGGTTGTGCCGCG
CGACGACCCCACCGGCGGCCCCAGCCTCACCAATGCCTACCTCAAAGGCC
AAATATCCACCGTCCCGCTCATCGACGCCTTGCACCACGGCGACGCCGTC
AAGGGCGATGTGCTGCGCTCCATCGAAATCATCGTCGAGCTTTTCATCCT
CGTGTCCACCGGCGTCAGCTTCTTTGTCACGGCCGCTGGCATGAAGAGCT
TTGTGGATGGCGGCGTGCACATCATGAGCGCCGGCGTGCACGCCGCTTGG
AAGAAAACGCTTTCAACTGTCGTGGCGTACGGGCTGTCGTTTGGCCTCGT
TTTAGTCATCATTTTGGCCAATCCGAACGGATTCATCGCCGTTCTCACCA
GGTTTTCGTCCTTCACACTCAACCTGCAGGCCGGCTTGATGCTCTTCGTC
ATGTACTTGACCGCGAAGACGATGAGACGCGGCTTGACAAGCATTGAGGA
AGGAAAAGGCTCGGCGGAAGGCAGCGACAGTCGCTCCATCCCGTCTGCAT
TTTCTCCCGTCTTCGGAACAACTGCCACTGTGTACGGCATTATTTTCTTT
ACCATAGCCTGTTTACTCGCGTCGGTGGGGCCGTTTCTGGGTATTCGTCT
GGGTGCCAGGGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:171914..173029-

>Gvermi3133.t1 ID=Gvermi3133.t1|Name=Gvermi3133.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1116bp|location=Sequence derived from alignment at ScGOVlb_41:171914..173029- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTGCTTCATTTCCATGCTCGTTTCGTACGGGCTGGCCGGTCCGCA
GGCCGTGTGGCAGCTTTTGACCGCCGGTCCGTCCCAGTCCCACCCGCCGC
CCTACGTCTTCGCGTCGTACTGGGCTTTGGGAACCACCGCCGTCGTGTTT
TTCGTCGACCACCTGCTGGGCGTTTTCGGCTCCTTCACAGTCCTCAAGGG
CTCCCTGTTCATCGGCGTTGTCATCATTGTCGCCGCCCTCCCCGCCGCCG
CGCGCGTCAGCCAGCTGACCGAGCTCATATCCGACATGTCGGGCTGGCAA
CACACCGCCACCCCGTTTCTCATGGCCTGCGTCGCCCTGGGCGGCCTGGC
CAACACCCTGCCCGTCACCTACCGCCTTTTGCCGCACAAGCCCACGCCGG
CCCAGGTCGGCCGCTACCGCACCGCCATTGTGCTGGCCGCCGTGCTTTGC
TACCTGCTCAACGTCGGCTGGGTGTTCGCCGTTCTGCAGGTTGTGCCGCG
CGACGACCCCACCGGCGGCCCCAGCCTCACCAATGCCTACCTCAAAGGCC
AAATATCCACCGTCCCGCTCATCGACGCCTTGCACCACGGCGACGCCGTC
AAGGGCGATGTGCTGCGCTCCATCGAAATCATCGTCGAGCTTTTCATCCT
CGTGTCCACCGGCGTCAGCTTCTTTGTCACGGCCGCTGGCATGAAGAGCT
TTGTGGATGGCGGCGTGCACATCATGAGCGCCGGCGTGCACGCCGCTTGG
AAGAAAACGCTTTCAACTGTCGTGGCGTACGGGCTGTCGTTTGGCCTCGT
TTTAGTCATCATTTTGGCCAATCCGAACGGATTCATCGCCGTTCTCACCA
GGTTTTCGTCCTTCACACTCAACCTGCAGGCCGGCTTGATGCTCTTCGTC
ATGTACTTGACCGCGAAGACGATGAGACGCGGCTTGACAAGCATTGAGGA
AGGAAAAGGCTCGGCGGAAGGCAGCGACAGTCGCTCCATCCCGTCTGCAT
TTTCTCCCGTCTTCGGAACAACTGCCACTGTGTACGGCATTATTTTCTTT
ACCATAGCCTGTTTACTCGCGTCGGTGGGGCCGTTTCTGGGTATTCGTCT
GGGTGCCAGGGAATGA
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