Gvermi3126.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3126.t1
Unique NameGvermi3126.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:150559..151092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FTR2
PFAMsGST_N_3,Glutaredoxin2_C
Max annot lvl2759|Eukaryota
Evalue5.88e-39
EggNOG OGsCOG2999@1|root,2RYF1@2759|Eukaryota
DescriptionGlutaredoxin 2, C terminal domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3126Gvermi3126Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 150559..151092 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3126.t1.stop1Gvermi3126.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 150559..150561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3126.t1.CDS1Gvermi3126.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 150559..151092 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3126.t1.exon1Gvermi3126.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 150559..151092 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3126.t1.start1Gvermi3126.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 151090..151092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3126.t1Gvermi3126.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 150559..151092 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3126.t1 ID=Gvermi3126.t1|Name=Gvermi3126.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=178bp
MVPIFQPDGPSGSAFPESLDICAAIDTDSRFGEPGLLKPASQRTDITQWL
DEHNMTLRRLTRVRYARAPLPEFVFAEGREAFVRNHPLMNPASFEENLKN
SAEYIAEIQSSIQQLADMIHSPYYCSPQGLSYDDIVLFPRLQSMTIIKGL
KLPPAIRNYLEYHSSTAEIPLFDYCAE*
back to top

spliced messenger RNA

>Gvermi3126.t1 ID=Gvermi3126.t1|Name=Gvermi3126.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp|location=Sequence derived from alignment at ScGOVlb_41:150559..151092- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCAATCTTCCAACCCGATGGCCCTTCTGGCTCCGCTTTCCCGGA
AAGTCTCGACATCTGCGCCGCTATTGACACCGATAGCCGTTTTGGGGAGC
CGGGTTTGCTGAAGCCTGCATCCCAACGCACGGACATTACACAGTGGTTG
GATGAGCATAACATGACGTTACGTCGTCTCACTCGCGTGCGATATGCGCG
CGCGCCACTGCCCGAGTTTGTCTTTGCGGAAGGTAGAGAGGCTTTCGTGC
GTAACCATCCGCTGATGAACCCGGCGAGCTTTGAGGAGAACCTTAAAAAC
TCGGCAGAGTACATCGCGGAGATCCAAAGCAGTATTCAGCAGTTGGCGGA
TATGATTCACTCTCCGTACTACTGCTCGCCACAGGGTTTGTCGTACGATG
ACATTGTTCTCTTCCCGCGTTTACAATCCATGACCATCATCAAGGGCCTA
AAACTACCGCCCGCAATACGAAATTATCTGGAGTACCACTCCAGCACGGC
TGAGATCCCACTGTTTGATTACTGCGCGGAATGA
back to top

protein sequence of Gvermi3126.t1

>Gvermi3126.t1 ID=Gvermi3126.t1|Name=Gvermi3126.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=178bp
MVPIFQPDGPSGSAFPESLDICAAIDTDSRFGEPGLLKPASQRTDITQWL
DEHNMTLRRLTRVRYARAPLPEFVFAEGREAFVRNHPLMNPASFEENLKN
SAEYIAEIQSSIQQLADMIHSPYYCSPQGLSYDDIVLFPRLQSMTIIKGL
KLPPAIRNYLEYHSSTAEIPLFDYCAE*
back to top

mRNA from alignment at ScGOVlb_41:150559..151092-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3126.t1 ID=Gvermi3126.t1|Name=Gvermi3126.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp|location=Sequence derived from alignment at ScGOVlb_41:150559..151092- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTCCAATCTTCCAACCCGATGGCCCTTCTGGCTCCGCTTTCCCGGA
AAGTCTCGACATCTGCGCCGCTATTGACACCGATAGCCGTTTTGGGGAGC
CGGGTTTGCTGAAGCCTGCATCCCAACGCACGGACATTACACAGTGGTTG
GATGAGCATAACATGACGTTACGTCGTCTCACTCGCGTGCGATATGCGCG
CGCGCCACTGCCCGAGTTTGTCTTTGCGGAAGGTAGAGAGGCTTTCGTGC
GTAACCATCCGCTGATGAACCCGGCGAGCTTTGAGGAGAACCTTAAAAAC
TCGGCAGAGTACATCGCGGAGATCCAAAGCAGTATTCAGCAGTTGGCGGA
TATGATTCACTCTCCGTACTACTGCTCGCCACAGGGTTTGTCGTACGATG
ACATTGTTCTCTTCCCGCGTTTACAATCCATGACCATCATCAAGGGCCTA
AAACTACCGCCCGCAATACGAAATTATCTGGAGTACCACTCCAGCACGGC
TGAGATCCCACTGTTTGATTACTGCGCGGAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:150559..151092-

>Gvermi3126.t1 ID=Gvermi3126.t1|Name=Gvermi3126.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=534bp|location=Sequence derived from alignment at ScGOVlb_41:150559..151092- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTCCAATCTTCCAACCCGATGGCCCTTCTGGCTCCGCTTTCCCGGA
AAGTCTCGACATCTGCGCCGCTATTGACACCGATAGCCGTTTTGGGGAGC
CGGGTTTGCTGAAGCCTGCATCCCAACGCACGGACATTACACAGTGGTTG
GATGAGCATAACATGACGTTACGTCGTCTCACTCGCGTGCGATATGCGCG
CGCGCCACTGCCCGAGTTTGTCTTTGCGGAAGGTAGAGAGGCTTTCGTGC
GTAACCATCCGCTGATGAACCCGGCGAGCTTTGAGGAGAACCTTAAAAAC
TCGGCAGAGTACATCGCGGAGATCCAAAGCAGTATTCAGCAGTTGGCGGA
TATGATTCACTCTCCGTACTACTGCTCGCCACAGGGTTTGTCGTACGATG
ACATTGTTCTCTTCCCGCGTTTACAATCCATGACCATCATCAAGGGCCTA
AAACTACCGCCCGCAATACGAAATTATCTGGAGTACCACTCCAGCACGGC
TGAGATCCCACTGTTTGATTACTGCGCGGAATGA
back to top