Gvermi3062.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3062.t1
Unique NameGvermi3062.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2250contigScGOVlb_2250:33..1511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3062Gvermi3062Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2250 33..1511 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3062.t1.stop1Gvermi3062.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2250 33..35 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3062.t1.CDS1Gvermi3062.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2250 33..1511 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3062.t1.exon1Gvermi3062.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2250 33..1511 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3062.t1.start1Gvermi3062.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2250 1509..1511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3062.t1Gvermi3062.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2250 33..1511 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3062.t1 ID=Gvermi3062.t1|Name=Gvermi3062.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=493bp
LPKTRIWIPGAGVGELEAYRQDNGFHEGVRMSSDGLAILGVPVGNPVFVA
QYLQTQAVKHDQRLTTIAQIHNTACEFEMIRAMAGVPALQHLLGAFPPPT
TKDLCEHVDNAMKERHLHLLNSSKYLQNLQLDHLDPHFAAQWTLPQRLGG
LGHLSMQTVAPASFLSAQSFLRSIDNDVSRQQHRFSPSPSVTNTTTSYNK
LVHPDDRITFVGPQHDLLPMGLAQHKLTDRLHRRAFDVLISEKPRPSLRQ
RHMLYRGSDVGARAWLKPLWLDGRLQIRSHQFPILLRHALGMPLVNRTTD
SIEVPCPFRTLENNPCKSVNEDVHLHHSGDCCKSKNTRRHNEVCAALTRI
CETAGLSVQREVQTMTRSQSRMADLKVWGPGLNGRTMIIDVTVSGTLTDA
KRLPRLEKAKFDRYQMEIADLPRSTTFFPFSLTSLGGRGSKAKEAIQLIA
PILARRLVMSASTSFDWIYRLLGTTMMAHKGDNLSAVLCNEA*
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spliced messenger RNA

>Gvermi3062.t1 ID=Gvermi3062.t1|Name=Gvermi3062.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at ScGOVlb_2250:33..1511- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCCAAGACAAGGATCTGGATCCCTGGAGCGGGCGTGGGCGAGCTCGA
AGCCTACCGCCAGGACAATGGCTTCCATGAGGGAGTCCGGATGTCGAGCG
ACGGCCTTGCAATCCTGGGCGTCCCCGTCGGCAACCCCGTCTTTGTGGCG
CAATACCTGCAGACACAGGCAGTCAAACACGACCAGCGTCTCACCACCAT
CGCCCAGATCCATAACACTGCATGCGAGTTCGAGATGATCCGCGCCATGG
CCGGCGTGCCCGCGCTGCAACATCTCCTGGGAGCCTTCCCTCCGCCCACT
ACCAAGGACCTCTGTGAGCATGTGGACAACGCCATGAAGGAGCGGCACCT
GCACCTCTTGAACAGCTCGAAGTACCTCCAAAATCTTCAACTCGACCACC
TCGACCCGCACTTTGCCGCCCAGTGGACCCTCCCCCAGCGTCTCGGCGGA
CTCGGCCACCTGTCAATGCAGACGGTGGCCCCAGCCTCCTTCCTGAGCGC
CCAAAGCTTTTTGCGAAGCATTGACAACGACGTGTCCCGCCAACAGCATC
GTTTCTCCCCGTCGCCTTCCGTGACCAACACCACTACTTCATACAACAAG
TTGGTACACCCAGACGACCGGATTACTTTTGTTGGCCCTCAACACGATCT
ACTGCCCATGGGCCTCGCCCAGCACAAGCTCACAGACAGACTGCACCGCC
GGGCCTTCGACGTGCTGATCTCGGAAAAACCCCGTCCCAGTCTGCGCCAG
CGCCACATGCTCTACCGCGGCTCGGACGTGGGTGCGCGCGCATGGCTCAA
GCCGCTGTGGCTTGATGGCCGCCTGCAGATCCGCTCCCACCAATTCCCTA
TCCTCCTGCGCCATGCTTTGGGGATGCCCCTCGTCAACCGCACCACTGAC
TCCATCGAGGTGCCCTGCCCCTTTCGCACTCTCGAGAACAACCCATGCAA
GTCTGTCAACGAGGACGTGCACCTCCACCACTCGGGCGACTGCTGCAAGT
CAAAGAACACTCGTCGCCACAACGAGGTCTGCGCGGCCCTGACACGCATC
TGCGAGACCGCTGGGCTCTCAGTTCAAAGAGAGGTGCAAACGATGACCCG
CTCTCAATCGCGGATGGCCGACTTGAAAGTATGGGGCCCGGGCCTCAACG
GTCGCACCATGATCATCGACGTGACGGTATCCGGGACGCTCACGGATGCA
AAGCGCCTGCCGCGCCTGGAGAAGGCAAAATTCGATCGATACCAGATGGA
GATCGCCGACCTGCCGCGCTCCACCACCTTTTTCCCATTCTCTCTAACTT
CACTCGGGGGTCGCGGTTCAAAGGCCAAGGAAGCGATCCAGCTGATTGCT
CCCATTTTGGCTCGGAGGCTGGTGATGAGTGCCAGTACATCGTTCGATTG
GATCTACCGCCTGCTTGGAACAACCATGATGGCTCATAAGGGAGACAATC
TGTCAGCAGTTTTGTGCAACGAAGCCTAA
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protein sequence of Gvermi3062.t1

>Gvermi3062.t1 ID=Gvermi3062.t1|Name=Gvermi3062.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=493bp
LPKTRIWIPGAGVGELEAYRQDNGFHEGVRMSSDGLAILGVPVGNPVFVA
QYLQTQAVKHDQRLTTIAQIHNTACEFEMIRAMAGVPALQHLLGAFPPPT
TKDLCEHVDNAMKERHLHLLNSSKYLQNLQLDHLDPHFAAQWTLPQRLGG
LGHLSMQTVAPASFLSAQSFLRSIDNDVSRQQHRFSPSPSVTNTTTSYNK
LVHPDDRITFVGPQHDLLPMGLAQHKLTDRLHRRAFDVLISEKPRPSLRQ
RHMLYRGSDVGARAWLKPLWLDGRLQIRSHQFPILLRHALGMPLVNRTTD
SIEVPCPFRTLENNPCKSVNEDVHLHHSGDCCKSKNTRRHNEVCAALTRI
CETAGLSVQREVQTMTRSQSRMADLKVWGPGLNGRTMIIDVTVSGTLTDA
KRLPRLEKAKFDRYQMEIADLPRSTTFFPFSLTSLGGRGSKAKEAIQLIA
PILARRLVMSASTSFDWIYRLLGTTMMAHKGDNLSAVLCNEA*
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mRNA from alignment at ScGOVlb_2250:33..1511-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3062.t1 ID=Gvermi3062.t1|Name=Gvermi3062.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at ScGOVlb_2250:33..1511- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCCAAGACAAGGATCTGGATCCCTGGAGCGGGCGTGGGCGAGCTCGA
AGCCTACCGCCAGGACAATGGCTTCCATGAGGGAGTCCGGATGTCGAGCG
ACGGCCTTGCAATCCTGGGCGTCCCCGTCGGCAACCCCGTCTTTGTGGCG
CAATACCTGCAGACACAGGCAGTCAAACACGACCAGCGTCTCACCACCAT
CGCCCAGATCCATAACACTGCATGCGAGTTCGAGATGATCCGCGCCATGG
CCGGCGTGCCCGCGCTGCAACATCTCCTGGGAGCCTTCCCTCCGCCCACT
ACCAAGGACCTCTGTGAGCATGTGGACAACGCCATGAAGGAGCGGCACCT
GCACCTCTTGAACAGCTCGAAGTACCTCCAAAATCTTCAACTCGACCACC
TCGACCCGCACTTTGCCGCCCAGTGGACCCTCCCCCAGCGTCTCGGCGGA
CTCGGCCACCTGTCAATGCAGACGGTGGCCCCAGCCTCCTTCCTGAGCGC
CCAAAGCTTTTTGCGAAGCATTGACAACGACGTGTCCCGCCAACAGCATC
GTTTCTCCCCGTCGCCTTCCGTGACCAACACCACTACTTCATACAACAAG
TTGGTACACCCAGACGACCGGATTACTTTTGTTGGCCCTCAACACGATCT
ACTGCCCATGGGCCTCGCCCAGCACAAGCTCACAGACAGACTGCACCGCC
GGGCCTTCGACGTGCTGATCTCGGAAAAACCCCGTCCCAGTCTGCGCCAG
CGCCACATGCTCTACCGCGGCTCGGACGTGGGTGCGCGCGCATGGCTCAA
GCCGCTGTGGCTTGATGGCCGCCTGCAGATCCGCTCCCACCAATTCCCTA
TCCTCCTGCGCCATGCTTTGGGGATGCCCCTCGTCAACCGCACCACTGAC
TCCATCGAGGTGCCCTGCCCCTTTCGCACTCTCGAGAACAACCCATGCAA
GTCTGTCAACGAGGACGTGCACCTCCACCACTCGGGCGACTGCTGCAAGT
CAAAGAACACTCGTCGCCACAACGAGGTCTGCGCGGCCCTGACACGCATC
TGCGAGACCGCTGGGCTCTCAGTTCAAAGAGAGGTGCAAACGATGACCCG
CTCTCAATCGCGGATGGCCGACTTGAAAGTATGGGGCCCGGGCCTCAACG
GTCGCACCATGATCATCGACGTGACGGTATCCGGGACGCTCACGGATGCA
AAGCGCCTGCCGCGCCTGGAGAAGGCAAAATTCGATCGATACCAGATGGA
GATCGCCGACCTGCCGCGCTCCACCACCTTTTTCCCATTCTCTCTAACTT
CACTCGGGGGTCGCGGTTCAAAGGCCAAGGAAGCGATCCAGCTGATTGCT
CCCATTTTGGCTCGGAGGCTGGTGATGAGTGCCAGTACATCGTTCGATTG
GATCTACCGCCTGCTTGGAACAACCATGATGGCTCATAAGGGAGACAATC
TGTCAGCAGTTTTGTGCAACGAAGCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2250:33..1511-

>Gvermi3062.t1 ID=Gvermi3062.t1|Name=Gvermi3062.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1479bp|location=Sequence derived from alignment at ScGOVlb_2250:33..1511- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCCAAGACAAGGATCTGGATCCCTGGAGCGGGCGTGGGCGAGCTCGA
AGCCTACCGCCAGGACAATGGCTTCCATGAGGGAGTCCGGATGTCGAGCG
ACGGCCTTGCAATCCTGGGCGTCCCCGTCGGCAACCCCGTCTTTGTGGCG
CAATACCTGCAGACACAGGCAGTCAAACACGACCAGCGTCTCACCACCAT
CGCCCAGATCCATAACACTGCATGCGAGTTCGAGATGATCCGCGCCATGG
CCGGCGTGCCCGCGCTGCAACATCTCCTGGGAGCCTTCCCTCCGCCCACT
ACCAAGGACCTCTGTGAGCATGTGGACAACGCCATGAAGGAGCGGCACCT
GCACCTCTTGAACAGCTCGAAGTACCTCCAAAATCTTCAACTCGACCACC
TCGACCCGCACTTTGCCGCCCAGTGGACCCTCCCCCAGCGTCTCGGCGGA
CTCGGCCACCTGTCAATGCAGACGGTGGCCCCAGCCTCCTTCCTGAGCGC
CCAAAGCTTTTTGCGAAGCATTGACAACGACGTGTCCCGCCAACAGCATC
GTTTCTCCCCGTCGCCTTCCGTGACCAACACCACTACTTCATACAACAAG
TTGGTACACCCAGACGACCGGATTACTTTTGTTGGCCCTCAACACGATCT
ACTGCCCATGGGCCTCGCCCAGCACAAGCTCACAGACAGACTGCACCGCC
GGGCCTTCGACGTGCTGATCTCGGAAAAACCCCGTCCCAGTCTGCGCCAG
CGCCACATGCTCTACCGCGGCTCGGACGTGGGTGCGCGCGCATGGCTCAA
GCCGCTGTGGCTTGATGGCCGCCTGCAGATCCGCTCCCACCAATTCCCTA
TCCTCCTGCGCCATGCTTTGGGGATGCCCCTCGTCAACCGCACCACTGAC
TCCATCGAGGTGCCCTGCCCCTTTCGCACTCTCGAGAACAACCCATGCAA
GTCTGTCAACGAGGACGTGCACCTCCACCACTCGGGCGACTGCTGCAAGT
CAAAGAACACTCGTCGCCACAACGAGGTCTGCGCGGCCCTGACACGCATC
TGCGAGACCGCTGGGCTCTCAGTTCAAAGAGAGGTGCAAACGATGACCCG
CTCTCAATCGCGGATGGCCGACTTGAAAGTATGGGGCCCGGGCCTCAACG
GTCGCACCATGATCATCGACGTGACGGTATCCGGGACGCTCACGGATGCA
AAGCGCCTGCCGCGCCTGGAGAAGGCAAAATTCGATCGATACCAGATGGA
GATCGCCGACCTGCCGCGCTCCACCACCTTTTTCCCATTCTCTCTAACTT
CACTCGGGGGTCGCGGTTCAAAGGCCAAGGAAGCGATCCAGCTGATTGCT
CCCATTTTGGCTCGGAGGCTGGTGATGAGTGCCAGTACATCGTTCGATTG
GATCTACCGCCTGCTTGGAACAACCATGATGGCTCATAAGGGAGACAATC
TGTCAGCAGTTTTGTGCAACGAAGCCTAA
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