Gvermi266.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi266.t1
Unique NameGvermi266.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length58
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_4512contigScGOVlb_4512:276..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi266Gvermi266Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_4512 276..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi266.t1Gvermi266.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_4512 276..563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi266.t1.CDS1Gvermi266.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_4512 276..368 +
Gvermi266.t1.CDS2Gvermi266.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_4512 483..563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi266.t1.exon1Gvermi266.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_4512 276..368 +
Gvermi266.t1.exon2Gvermi266.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_4512 483..563 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi266.t1.intron1Gvermi266.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_4512 369..482 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi266.t1.stop1Gvermi266.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_4512 561..563 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi266.t1 ID=Gvermi266.t1|Name=Gvermi266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=58bp
SRRVPSRSPPTKRDGKVFCCGGRRADRIDTSCDLFLRENNFVCRLIGLPL
PIVARGK*
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spliced messenger RNA

>Gvermi266.t1 ID=Gvermi266.t1|Name=Gvermi266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=174bp|location=Sequence derived from alignment at ScGOVlb_4512:276..563+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
AGCCGCCGAGTGCCATCCAGATCGCCGCCCACCAAGCGCGACGGAAAAGT
GTTTTGCTGTGGTGGTCGAAGAGCTGATCGTATAGATACATCGTGTGATC
TGTTTTTAAGGGAAAACAACTTTGTGTGCCGGCTCATCGGCCTTCCGTTG
CCGATTGTCGCGAGAGGGAAATGA
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protein sequence of Gvermi266.t1

>Gvermi266.t1 ID=Gvermi266.t1|Name=Gvermi266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=58bp
SRRVPSRSPPTKRDGKVFCCGGRRADRIDTSCDLFLRENNFVCRLIGLPL
PIVARGK*
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mRNA from alignment at ScGOVlb_4512:276..563+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi266.t1 ID=Gvermi266.t1|Name=Gvermi266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=288bp|location=Sequence derived from alignment at ScGOVlb_4512:276..563+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AGCCGCCGAGTGCCATCCAGATCGCCGCCCACCAAGCGCGACGGAAAAGT
GTTTTGCTGTGGTGGTCGAAGAGCTGATCGTATAGATACATCGGTAATGT
GTACCAGTTATTTCTGGTTGATGAAATGAATCAATTTCTCATCTTTTGTT
TACTTTTGAATGCGGCAACATACCTTGCGGATGATCGAGTGCCTCTTTCA
TTCACAGTGTGATCTGTTTTTAAGGGAAAACAACTTTGTGTGCCGGCTCA
TCGGCCTTCCGTTGCCGATTGTCGCGAGAGGGAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_4512:276..563+

>Gvermi266.t1 ID=Gvermi266.t1|Name=Gvermi266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=174bp|location=Sequence derived from alignment at ScGOVlb_4512:276..563+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AGCCGCCGAGTGCCATCCAGATCGCCGCCCACCAAGCGCGACGGAAAAGT
GTTTTGCTGTGGTGGTCGAAGAGCTGATCGTATAGATACATCGTGTGATC
TGTTTTTAAGGGAAAACAACTTTGTGTGCCGGCTCATCGGCCTTCCGTTG
CCGATTGTCGCGAGAGGGAAATGA
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