Gvermi2412.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2412.t1
Unique NameGvermi2412.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length527
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1102contigScGOVlb_1102:1..1718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2412Gvermi2412Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1102 1..1718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2412.t1Gvermi2412.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1102 1..1718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2412.t1.CDS1Gvermi2412.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1102 1..1356 -
Gvermi2412.t1.CDS2Gvermi2412.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1102 1494..1718 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2412.t1.exon1Gvermi2412.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1102 1..1356 -
Gvermi2412.t1.exon2Gvermi2412.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1102 1494..1718 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2412.t1.intron1Gvermi2412.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1102 1357..1493 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2412.t1.start1Gvermi2412.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1102 1716..1718 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2412.t1 ID=Gvermi2412.t1|Name=Gvermi2412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=527bp
MGSTPDNLVTAANITLDNTSPEGASFQGQSPDFFDGAGGDFRLVISDAEA
RGRGVDLSSDEFYSFENDITGTERVGFSASFDPNTAIFVIPKIEGDPLKN
IFDEDTKKTEEVIDELEAAKEIVEKVEIIENENGSTVRIPIKNDQGEYEI
VDIEFTEDENNRTINIPGEGDLSIIIDDNGDYNIELTPEQIKESNNISCG
VNSTGKSICTISPFVSIIGGKVLKADELAVDYAGSGNLTILNGVAKNLIL
VDEDSKTNFNKSVVSAGDSTIGVSFYKKGDSSQDDDEVLGLLNPFSQNSK
LLNSPEEFKKSDNFQITLNTSKLTKEVTNPKNRSETATQFEVFDNKGVTT
TLNFSRGETTNIDMSAAINGGFKYNSDPFSKNSIIVESSSPVSLNFSSQS
GPNGEQASLSMLMDENDLSGDQSVLTILDESEKGNTQKSTVFGKTGVQLK
QTGEDNVAFEVYSQKIINEKEDANGKKVTLTIEGPKIIGSQIADEKSIIA
SADSIDYVSKKNGIPQSKLSLGDGIQY
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spliced messenger RNA

>Gvermi2412.t1 ID=Gvermi2412.t1|Name=Gvermi2412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1581bp|location=Sequence derived from alignment at ScGOVlb_1102:1..1718- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCAACCCCAGACAATTTAGTTACAGCTGCAAATATAACTCTCGA
TAATACTTCTCCTGAAGGGGCAAGTTTTCAAGGTCAGAGCCCCGATTTTT
TTGATGGAGCAGGTGGGGATTTTCGCCTAGTTATTAGTGATGCAGAGGCC
AGAGGAAGAGGAGTAGATCTCTCAAGTGATGAGTTTTATAGTTTTGAGAA
TGATATCACCGGAACTGAGAGAGTTGGCTTTTCAGCTTCTTTTGATCCTA
ATACAGCAATTTTTGTCATTCCTAAAATCGAAGGTGACCCTTTAAAAAAT
ATTTTTGATGAAGATACGAAAAAAACTGAAGAAGTTATTGATGAACTAGA
AGCTGCTAAAGAAATAGTCGAAAAAGTAGAGATTATTGAAAATGAAAATG
GCTCAACTGTTAGAATACCCATAAAAAATGATCAAGGTGAGTATGAGATT
GTTGATATTGAATTTACAGAAGATGAGAATAATAGAACGATAAATATTCC
AGGAGAGGGAGATTTATCAATCATTATTGATGATAATGGCGATTACAATA
TTGAACTTACTCCTGAACAAATAAAAGAATCTAATAATATTTCTTGTGGT
GTGAACTCTACAGGAAAAAGCATTTGTACAATAAGTCCCTTTGTCTCTAT
TATCGGCGGCAAGGTTCTAAAGGCAGATGAATTAGCCGTTGATTATGCTG
GTAGTGGAAATTTAACTATCTTGAATGGCGTAGCAAAGAATTTAATATTA
GTAGACGAGGACTCTAAGACCAACTTTAATAAATCTGTTGTAAGCGCTGG
AGATAGCACCATTGGTGTCAGCTTTTATAAGAAGGGTGATTCTTCACAAG
ATGACGATGAAGTTTTAGGTTTATTAAATCCGTTTAGTCAAAACTCAAAA
TTATTAAACTCACCTGAGGAATTTAAAAAATCAGATAACTTTCAAATAAC
TTTAAATACGTCAAAGTTAACAAAAGAAGTGACAAATCCTAAGAATCGAT
CAGAAACAGCTACCCAATTTGAAGTATTTGATAATAAGGGAGTCACAACG
ACCCTAAACTTTAGTCGCGGAGAAACAACTAATATTGATATGTCTGCTGC
TATTAATGGAGGGTTTAAGTACAATTCTGATCCATTCAGCAAAAATTCAA
TTATTGTTGAATCAAGTTCTCCCGTTAGTTTGAATTTTAGTTCACAGAGT
GGACCCAATGGAGAGCAAGCATCATTAAGTATGCTTATGGATGAGAATGA
CTTAAGTGGTGATCAATCTGTCCTGACAATTTTAGATGAATCTGAAAAGG
GAAATACGCAAAAAAGTACAGTTTTTGGAAAAACGGGAGTTCAGTTAAAA
CAAACAGGTGAAGATAATGTGGCCTTTGAAGTTTATAGTCAAAAAATAAT
TAATGAAAAAGAGGATGCTAACGGAAAAAAGGTAACTCTTACTATAGAAG
GTCCAAAAATTATTGGTTCCCAGATTGCCGATGAGAAAAGTATTATTGCA
TCTGCTGATTCAATTGATTATGTTTCAAAAAAGAATGGAATACCTCAATC
AAAACTAAGCCTTGGTGATGGTATTCAATAC
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protein sequence of Gvermi2412.t1

>Gvermi2412.t1 ID=Gvermi2412.t1|Name=Gvermi2412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=527bp
MGSTPDNLVTAANITLDNTSPEGASFQGQSPDFFDGAGGDFRLVISDAEA
RGRGVDLSSDEFYSFENDITGTERVGFSASFDPNTAIFVIPKIEGDPLKN
IFDEDTKKTEEVIDELEAAKEIVEKVEIIENENGSTVRIPIKNDQGEYEI
VDIEFTEDENNRTINIPGEGDLSIIIDDNGDYNIELTPEQIKESNNISCG
VNSTGKSICTISPFVSIIGGKVLKADELAVDYAGSGNLTILNGVAKNLIL
VDEDSKTNFNKSVVSAGDSTIGVSFYKKGDSSQDDDEVLGLLNPFSQNSK
LLNSPEEFKKSDNFQITLNTSKLTKEVTNPKNRSETATQFEVFDNKGVTT
TLNFSRGETTNIDMSAAINGGFKYNSDPFSKNSIIVESSSPVSLNFSSQS
GPNGEQASLSMLMDENDLSGDQSVLTILDESEKGNTQKSTVFGKTGVQLK
QTGEDNVAFEVYSQKIINEKEDANGKKVTLTIEGPKIIGSQIADEKSIIA
SADSIDYVSKKNGIPQSKLSLGDGIQY
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mRNA from alignment at ScGOVlb_1102:1..1718-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2412.t1 ID=Gvermi2412.t1|Name=Gvermi2412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1718bp|location=Sequence derived from alignment at ScGOVlb_1102:1..1718- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCAACCCCAGACAATTTAGTTACAGCTGCAAATATAACTCTCGA
TAATACTTCTCCTGAAGGGGCAAGTTTTCAAGGTCAGAGCCCCGATTTTT
TTGATGGAGCAGGTGGGGATTTTCGCCTAGTTATTAGTGATGCAGAGGCC
AGAGGAAGAGGAGTAGATCTCTCAAGTGATGAGTTTTATAGTTTTGAGAA
TGATATCACCGGAACTGAGAGAGTTGTGTGGGATATCGGTGCTTTTATGT
ATTAATGAAATCTTCATTTAGGTGATTTTTGTTTAAATTCTTTAGCTATT
TCTCCGATTAGTTAATCGTGAGATTATCAATATTTATCCTATTTCTATTA
TTCACTTCTAAGGGCTTTTCAGCTTCTTTTGATCCTAATACAGCAATTTT
TGTCATTCCTAAAATCGAAGGTGACCCTTTAAAAAATATTTTTGATGAAG
ATACGAAAAAAACTGAAGAAGTTATTGATGAACTAGAAGCTGCTAAAGAA
ATAGTCGAAAAAGTAGAGATTATTGAAAATGAAAATGGCTCAACTGTTAG
AATACCCATAAAAAATGATCAAGGTGAGTATGAGATTGTTGATATTGAAT
TTACAGAAGATGAGAATAATAGAACGATAAATATTCCAGGAGAGGGAGAT
TTATCAATCATTATTGATGATAATGGCGATTACAATATTGAACTTACTCC
TGAACAAATAAAAGAATCTAATAATATTTCTTGTGGTGTGAACTCTACAG
GAAAAAGCATTTGTACAATAAGTCCCTTTGTCTCTATTATCGGCGGCAAG
GTTCTAAAGGCAGATGAATTAGCCGTTGATTATGCTGGTAGTGGAAATTT
AACTATCTTGAATGGCGTAGCAAAGAATTTAATATTAGTAGACGAGGACT
CTAAGACCAACTTTAATAAATCTGTTGTAAGCGCTGGAGATAGCACCATT
GGTGTCAGCTTTTATAAGAAGGGTGATTCTTCACAAGATGACGATGAAGT
TTTAGGTTTATTAAATCCGTTTAGTCAAAACTCAAAATTATTAAACTCAC
CTGAGGAATTTAAAAAATCAGATAACTTTCAAATAACTTTAAATACGTCA
AAGTTAACAAAAGAAGTGACAAATCCTAAGAATCGATCAGAAACAGCTAC
CCAATTTGAAGTATTTGATAATAAGGGAGTCACAACGACCCTAAACTTTA
GTCGCGGAGAAACAACTAATATTGATATGTCTGCTGCTATTAATGGAGGG
TTTAAGTACAATTCTGATCCATTCAGCAAAAATTCAATTATTGTTGAATC
AAGTTCTCCCGTTAGTTTGAATTTTAGTTCACAGAGTGGACCCAATGGAG
AGCAAGCATCATTAAGTATGCTTATGGATGAGAATGACTTAAGTGGTGAT
CAATCTGTCCTGACAATTTTAGATGAATCTGAAAAGGGAAATACGCAAAA
AAGTACAGTTTTTGGAAAAACGGGAGTTCAGTTAAAACAAACAGGTGAAG
ATAATGTGGCCTTTGAAGTTTATAGTCAAAAAATAATTAATGAAAAAGAG
GATGCTAACGGAAAAAAGGTAACTCTTACTATAGAAGGTCCAAAAATTAT
TGGTTCCCAGATTGCCGATGAGAAAAGTATTATTGCATCTGCTGATTCAA
TTGATTATGTTTCAAAAAAGAATGGAATACCTCAATCAAAACTAAGCCTT
GGTGATGGTATTCAATAC
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Coding sequence (CDS) from alignment at ScGOVlb_1102:1..1718-

>Gvermi2412.t1 ID=Gvermi2412.t1|Name=Gvermi2412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1581bp|location=Sequence derived from alignment at ScGOVlb_1102:1..1718- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCAACCCCAGACAATTTAGTTACAGCTGCAAATATAACTCTCGA
TAATACTTCTCCTGAAGGGGCAAGTTTTCAAGGTCAGAGCCCCGATTTTT
TTGATGGAGCAGGTGGGGATTTTCGCCTAGTTATTAGTGATGCAGAGGCC
AGAGGAAGAGGAGTAGATCTCTCAAGTGATGAGTTTTATAGTTTTGAGAA
TGATATCACCGGAACTGAGAGAGTTGGCTTTTCAGCTTCTTTTGATCCTA
ATACAGCAATTTTTGTCATTCCTAAAATCGAAGGTGACCCTTTAAAAAAT
ATTTTTGATGAAGATACGAAAAAAACTGAAGAAGTTATTGATGAACTAGA
AGCTGCTAAAGAAATAGTCGAAAAAGTAGAGATTATTGAAAATGAAAATG
GCTCAACTGTTAGAATACCCATAAAAAATGATCAAGGTGAGTATGAGATT
GTTGATATTGAATTTACAGAAGATGAGAATAATAGAACGATAAATATTCC
AGGAGAGGGAGATTTATCAATCATTATTGATGATAATGGCGATTACAATA
TTGAACTTACTCCTGAACAAATAAAAGAATCTAATAATATTTCTTGTGGT
GTGAACTCTACAGGAAAAAGCATTTGTACAATAAGTCCCTTTGTCTCTAT
TATCGGCGGCAAGGTTCTAAAGGCAGATGAATTAGCCGTTGATTATGCTG
GTAGTGGAAATTTAACTATCTTGAATGGCGTAGCAAAGAATTTAATATTA
GTAGACGAGGACTCTAAGACCAACTTTAATAAATCTGTTGTAAGCGCTGG
AGATAGCACCATTGGTGTCAGCTTTTATAAGAAGGGTGATTCTTCACAAG
ATGACGATGAAGTTTTAGGTTTATTAAATCCGTTTAGTCAAAACTCAAAA
TTATTAAACTCACCTGAGGAATTTAAAAAATCAGATAACTTTCAAATAAC
TTTAAATACGTCAAAGTTAACAAAAGAAGTGACAAATCCTAAGAATCGAT
CAGAAACAGCTACCCAATTTGAAGTATTTGATAATAAGGGAGTCACAACG
ACCCTAAACTTTAGTCGCGGAGAAACAACTAATATTGATATGTCTGCTGC
TATTAATGGAGGGTTTAAGTACAATTCTGATCCATTCAGCAAAAATTCAA
TTATTGTTGAATCAAGTTCTCCCGTTAGTTTGAATTTTAGTTCACAGAGT
GGACCCAATGGAGAGCAAGCATCATTAAGTATGCTTATGGATGAGAATGA
CTTAAGTGGTGATCAATCTGTCCTGACAATTTTAGATGAATCTGAAAAGG
GAAATACGCAAAAAAGTACAGTTTTTGGAAAAACGGGAGTTCAGTTAAAA
CAAACAGGTGAAGATAATGTGGCCTTTGAAGTTTATAGTCAAAAAATAAT
TAATGAAAAAGAGGATGCTAACGGAAAAAAGGTAACTCTTACTATAGAAG
GTCCAAAAATTATTGGTTCCCAGATTGCCGATGAGAAAAGTATTATTGCA
TCTGCTGATTCAATTGATTATGTTTCAAAAAAGAATGGAATACCTCAATC
AAAACTAAGCCTTGGTGATGGTATTCAATAC
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