Gvermi2278.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi2278.t1
Unique Name	Gvermi2278.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3256	contig	ScGOVlb_3256:1..1178 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005092239.1
Preferred name	MUC5B
PFAMs	C8,F5_F8_type_C,Mucin2_WxxW,TIL,VWD
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03900,ko:K10955,ko:K13908,ko:K21125,ko:K22020
KEGG Pathway	ko04151,ko04510,ko04512,ko04610,ko04611,ko04657,ko04970,ko05146,ko05165,ko05226,map04151,map04510,map04512,map04610,map04611,map04657,map04970,map05146,map05165,map05226
GOs	GO:0001775,GO:0002218,GO:0002220,GO:0002223,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002281,GO:0002366,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003008,GO:0003674,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0006810,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007154,GO:0007165,GO:0007166,GO:0007586,GO:0007599,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009611,GO:0009987,GO:0010876,GO:0012505,GO:0015850,GO:0015918,GO:0016020,GO:0016266,GO:0019538,GO:0022600,GO:0023052,GO:0030299,GO:0030301,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0033036,GO:0034645,GO:0035556,GO:0036211,GO:0042060,GO:0042116,GO:0042381,GO:0042592,GO:0042632,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044241,GO:0044249,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0045321,GO:0046790,GO:0046983,GO:0048015,GO:0048017,GO:0048518,GO:0048583,GO:0048584,GO:0048878,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050892,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055088,GO:0055092,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070701,GO:0071702,GO:0071704,GO:0071944,GO:0080134,GO:0098856,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	6e-28
EggNOG OGs	KOG1216@1\|root,KOG2649@1\|root,KOG1216@2759\|Eukaryota,KOG2649@2759\|Eukaryota,38BYG@33154\|Opisthokonta,3BBY5@33208\|Metazoa,3CRZ6@33213\|Bilateria
Description	biological adhesion
COG category	VW
BRITE	ko00000,ko00001,ko03110,ko04131,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi2278	Gvermi2278	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3256 1..1178 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2278.t1.CDS1	Gvermi2278.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3256 1..1178 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2278.t1.exon1	Gvermi2278.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3256 1..1178 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2278.t1.start1	Gvermi2278.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3256 1176..1178 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2278.t1	Gvermi2278.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3256 1..1178 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3256:1..1178-
coding sequence from alignment at ScGOVlb_3256:1..1178-

mRNA sequence

>Gvermi2278.t1 ID=Gvermi2278.t1|Name=Gvermi2278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=393bp
MCGNNDQDVSNDLTTLQPDWVVSNTSVLIQVAGENQCDPNDVGDPSSPVD
AACRVKANAYCGKLVAKDGPYRECLGVVDAAAYFEACVFDVCGCNDTACG
CETYGEYEKACLRRGVKLATSVIDKCGVCFGDGSTCNECTPTVVAGTCVS
ECKGVEAYLNADGKCVVTTVCKKGVEYEWQAPTAVSDRVCLPVRDCGVGT
MVVRDNTATSDRECADCDGINFYQNLVNQGSCKPMTVCKEWEQQVVAGTA
ASDRKCAALAMSTCSQWGDPHQTSYDGKRFNFQGLCDYVFTKWGKEFEVQ
VRHVKCGAASQQVSCTSAVGIRLPGSGAVVELQRGGIAYVDGVRVTKFPY
TDSVGNTVSLASGRQVTVRVAKTGAVVQWDGSSRVSASIPRLA

spliced messenger RNA

>Gvermi2278.t1 ID=Gvermi2278.t1|Name=Gvermi2278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1178bp|location=Sequence derived from alignment at ScGOVlb_3256:1..1178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGCAACAACGACCAGGATGTGAGCAATGACCTGACAACACTGCA
GCCCGACTGGGTTGTGAGCAACACAAGTGTGCTGATCCAGGTTGCGGGGG
AGAACCAGTGCGACCCCAACGATGTTGGAGATCCGAGCAGCCCTGTGGAT
GCGGCATGCCGGGTCAAGGCCAATGCATACTGCGGCAAGCTGGTGGCCAA
GGACGGGCCGTACCGCGAGTGCCTCGGGGTGGTGGATGCGGCGGCATACT
TTGAAGCCTGTGTGTTTGATGTGTGCGGATGCAACGACACGGCCTGTGGC
TGCGAGACGTATGGCGAGTATGAAAAGGCTTGCCTGCGCCGTGGCGTGAA
GCTGGCAACATCGGTGATTGACAAGTGTGGCGTGTGCTTTGGCGACGGCA
GCACCTGCAACGAGTGCACACCAACGGTTGTGGCTGGCACCTGTGTGTCA
GAGTGCAAGGGGGTGGAGGCATACCTGAATGCGGATGGCAAGTGTGTGGT
GACCACAGTGTGCAAGAAGGGTGTGGAGTACGAATGGCAGGCTCCCACGG
CCGTGTCGGACCGAGTGTGCTTGCCGGTGCGCGACTGCGGGGTGGGCACC
ATGGTGGTGCGCGACAACACTGCAACGAGCGACCGGGAGTGTGCGGACTG
CGACGGCATCAACTTTTACCAGAATCTGGTGAACCAAGGATCGTGCAAGC
CCATGACGGTGTGCAAGGAGTGGGAGCAGCAGGTGGTTGCTGGAACGGCA
GCGTCTGACCGCAAGTGTGCGGCGCTGGCCATGAGTACCTGCAGCCAATG
GGGCGACCCGCATCAGACGTCGTACGACGGCAAGCGGTTCAACTTCCAGG
GTCTGTGCGACTACGTGTTTACCAAGTGGGGCAAGGAGTTTGAGGTGCAG
GTGCGACATGTCAAGTGCGGAGCGGCGTCTCAGCAGGTGTCGTGCACGTC
GGCTGTGGGGATCCGGCTGCCGGGAAGCGGAGCTGTGGTGGAACTGCAGC
GCGGCGGCATTGCGTATGTGGATGGAGTGCGGGTGACCAAGTTCCCTTAC
ACGGACAGTGTGGGCAACACGGTGAGCCTTGCCTCTGGGCGGCAGGTGAC
GGTGCGCGTGGCCAAGACTGGTGCTGTTGTGCAGTGGGATGGGTCGTCGC
GAGTGTCGGCCTCGATTCCGCGCCTGGC

protein sequence of Gvermi2278.t1

>Gvermi2278.t1 ID=Gvermi2278.t1|Name=Gvermi2278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=393bp
MCGNNDQDVSNDLTTLQPDWVVSNTSVLIQVAGENQCDPNDVGDPSSPVD
AACRVKANAYCGKLVAKDGPYRECLGVVDAAAYFEACVFDVCGCNDTACG
CETYGEYEKACLRRGVKLATSVIDKCGVCFGDGSTCNECTPTVVAGTCVS
ECKGVEAYLNADGKCVVTTVCKKGVEYEWQAPTAVSDRVCLPVRDCGVGT
MVVRDNTATSDRECADCDGINFYQNLVNQGSCKPMTVCKEWEQQVVAGTA
ASDRKCAALAMSTCSQWGDPHQTSYDGKRFNFQGLCDYVFTKWGKEFEVQ
VRHVKCGAASQQVSCTSAVGIRLPGSGAVVELQRGGIAYVDGVRVTKFPY
TDSVGNTVSLASGRQVTVRVAKTGAVVQWDGSSRVSASIPRLA

mRNA from alignment at ScGOVlb_3256:1..1178-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi2278.t1 ID=Gvermi2278.t1|Name=Gvermi2278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1178bp|location=Sequence derived from alignment at ScGOVlb_3256:1..1178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGGCAACAACGACCAGGATGTGAGCAATGACCTGACAACACTGCA
GCCCGACTGGGTTGTGAGCAACACAAGTGTGCTGATCCAGGTTGCGGGGG
AGAACCAGTGCGACCCCAACGATGTTGGAGATCCGAGCAGCCCTGTGGAT
GCGGCATGCCGGGTCAAGGCCAATGCATACTGCGGCAAGCTGGTGGCCAA
GGACGGGCCGTACCGCGAGTGCCTCGGGGTGGTGGATGCGGCGGCATACT
TTGAAGCCTGTGTGTTTGATGTGTGCGGATGCAACGACACGGCCTGTGGC
TGCGAGACGTATGGCGAGTATGAAAAGGCTTGCCTGCGCCGTGGCGTGAA
GCTGGCAACATCGGTGATTGACAAGTGTGGCGTGTGCTTTGGCGACGGCA
GCACCTGCAACGAGTGCACACCAACGGTTGTGGCTGGCACCTGTGTGTCA
GAGTGCAAGGGGGTGGAGGCATACCTGAATGCGGATGGCAAGTGTGTGGT
GACCACAGTGTGCAAGAAGGGTGTGGAGTACGAATGGCAGGCTCCCACGG
CCGTGTCGGACCGAGTGTGCTTGCCGGTGCGCGACTGCGGGGTGGGCACC
ATGGTGGTGCGCGACAACACTGCAACGAGCGACCGGGAGTGTGCGGACTG
CGACGGCATCAACTTTTACCAGAATCTGGTGAACCAAGGATCGTGCAAGC
CCATGACGGTGTGCAAGGAGTGGGAGCAGCAGGTGGTTGCTGGAACGGCA
GCGTCTGACCGCAAGTGTGCGGCGCTGGCCATGAGTACCTGCAGCCAATG
GGGCGACCCGCATCAGACGTCGTACGACGGCAAGCGGTTCAACTTCCAGG
GTCTGTGCGACTACGTGTTTACCAAGTGGGGCAAGGAGTTTGAGGTGCAG
GTGCGACATGTCAAGTGCGGAGCGGCGTCTCAGCAGGTGTCGTGCACGTC
GGCTGTGGGGATCCGGCTGCCGGGAAGCGGAGCTGTGGTGGAACTGCAGC
GCGGCGGCATTGCGTATGTGGATGGAGTGCGGGTGACCAAGTTCCCTTAC
ACGGACAGTGTGGGCAACACGGTGAGCCTTGCCTCTGGGCGGCAGGTGAC
GGTGCGCGTGGCCAAGACTGGTGCTGTTGTGCAGTGGGATGGGTCGTCGC
GAGTGTCGGCCTCGATTCCGCGCCTGGC

Coding sequence (CDS) from alignment at ScGOVlb_3256:1..1178-

>Gvermi2278.t1 ID=Gvermi2278.t1|Name=Gvermi2278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1178bp|location=Sequence derived from alignment at ScGOVlb_3256:1..1178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGGCAACAACGACCAGGATGTGAGCAATGACCTGACAACACTGCA
GCCCGACTGGGTTGTGAGCAACACAAGTGTGCTGATCCAGGTTGCGGGGG
AGAACCAGTGCGACCCCAACGATGTTGGAGATCCGAGCAGCCCTGTGGAT
GCGGCATGCCGGGTCAAGGCCAATGCATACTGCGGCAAGCTGGTGGCCAA
GGACGGGCCGTACCGCGAGTGCCTCGGGGTGGTGGATGCGGCGGCATACT
TTGAAGCCTGTGTGTTTGATGTGTGCGGATGCAACGACACGGCCTGTGGC
TGCGAGACGTATGGCGAGTATGAAAAGGCTTGCCTGCGCCGTGGCGTGAA
GCTGGCAACATCGGTGATTGACAAGTGTGGCGTGTGCTTTGGCGACGGCA
GCACCTGCAACGAGTGCACACCAACGGTTGTGGCTGGCACCTGTGTGTCA
GAGTGCAAGGGGGTGGAGGCATACCTGAATGCGGATGGCAAGTGTGTGGT
GACCACAGTGTGCAAGAAGGGTGTGGAGTACGAATGGCAGGCTCCCACGG
CCGTGTCGGACCGAGTGTGCTTGCCGGTGCGCGACTGCGGGGTGGGCACC
ATGGTGGTGCGCGACAACACTGCAACGAGCGACCGGGAGTGTGCGGACTG
CGACGGCATCAACTTTTACCAGAATCTGGTGAACCAAGGATCGTGCAAGC
CCATGACGGTGTGCAAGGAGTGGGAGCAGCAGGTGGTTGCTGGAACGGCA
GCGTCTGACCGCAAGTGTGCGGCGCTGGCCATGAGTACCTGCAGCCAATG
GGGCGACCCGCATCAGACGTCGTACGACGGCAAGCGGTTCAACTTCCAGG
GTCTGTGCGACTACGTGTTTACCAAGTGGGGCAAGGAGTTTGAGGTGCAG
GTGCGACATGTCAAGTGCGGAGCGGCGTCTCAGCAGGTGTCGTGCACGTC
GGCTGTGGGGATCCGGCTGCCGGGAAGCGGAGCTGTGGTGGAACTGCAGC
GCGGCGGCATTGCGTATGTGGATGGAGTGCGGGTGACCAAGTTCCCTTAC
ACGGACAGTGTGGGCAACACGGTGAGCCTTGCCTCTGGGCGGCAGGTGAC
GGTGCGCGTGGCCAAGACTGGTGCTGTTGTGCAGTGGGATGGGTCGTCGC
GAGTGTCGGCCTCGATTCCGCGCCTGGC