Gvermi2197.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2197.t1
Unique NameGvermi2197.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length68
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_295contigScGOVlb_295:751..1412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2197Gvermi2197Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_295 751..1412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2197.t1Gvermi2197.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_295 751..1412 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2197.t1.start1Gvermi2197.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_295 751..753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2197.t1.CDS1Gvermi2197.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_295 751..878 +
Gvermi2197.t1.CDS2Gvermi2197.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_295 1239..1275 +
Gvermi2197.t1.CDS3Gvermi2197.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_295 1374..1412 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2197.t1.exon1Gvermi2197.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_295 751..878 +
Gvermi2197.t1.exon2Gvermi2197.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_295 1239..1275 +
Gvermi2197.t1.exon3Gvermi2197.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_295 1374..1412 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2197.t1.intron1Gvermi2197.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_295 879..1238 +
Gvermi2197.t1.intron2Gvermi2197.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_295 1276..1373 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2197.t1.stop1Gvermi2197.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_295 1410..1412 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2197.t1 ID=Gvermi2197.t1|Name=Gvermi2197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=68bp
MYVLLEKNARQHGDTEASTEEIDEVVIEEDDGGDDEYEEEIVDSSNIAVL
FGKQSYLSGDYGAHKDL*
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spliced messenger RNA

>Gvermi2197.t1 ID=Gvermi2197.t1|Name=Gvermi2197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=204bp|location=Sequence derived from alignment at ScGOVlb_295:751..1412+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGTGCTGCTGGAAAAGAATGCTCGGCAACACGGTGATACGGAGGC
GTCGACGGAAGAGATTGACGAAGTCGTCATTGAAGAGGATGATGGAGGTG
ACGACGAGTACGAAGAGGAAATTGTTGACTCCAGCAACATTGCAGTGCTG
TTTGGCAAGCAAAGCTACCTCAGCGGCGACTATGGCGCCCACAAGGACTT
GTAG
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protein sequence of Gvermi2197.t1

>Gvermi2197.t1 ID=Gvermi2197.t1|Name=Gvermi2197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=68bp
MYVLLEKNARQHGDTEASTEEIDEVVIEEDDGGDDEYEEEIVDSSNIAVL
FGKQSYLSGDYGAHKDL*
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mRNA from alignment at ScGOVlb_295:751..1412+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2197.t1 ID=Gvermi2197.t1|Name=Gvermi2197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=662bp|location=Sequence derived from alignment at ScGOVlb_295:751..1412+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATGTGCTGCTGGAAAAGAATGCTCGGCAACACGGTGATACGGAGGC
GTCGACGGAAGAGATTGACGAAGTCGTCATTGAAGAGGATGATGGAGGTG
ACGACGAGTACGAAGAGGAAATTGTTGAGTAGAAGGACGCCTGCGCTCGC
ATACGTGTGCGTGTCTTTTCTCGATTGCGCGAAGAATTGGCGGTTCAGCA
GACCTTTTCCACAGCAGTCGTTGCTCTTCGAAGGACTGGCACCTTTGAAT
CGACGCAAGGAGGTGGCGAAAGCGTACAAGAAGCGTCTTTTTGATTTACT
GGGCGCAGTGCCTCGTCGAGGGACGACGCTGGACCTGTACCGTCGCGCGG
TGTTTTAGTCGATCAGCGATTTACTCCGACTACGAAGACGCTAACAACAT
CCACGACGAGTGCACGGATCAAACGGATGCGTCCCTGCGTTTGCAGGCCC
CTTTGCTAGCAAAAACGACGCACGCATTCTAGTCCTAGCTCCAGCAACAT
TGCAGTGCTGTTTGGCAAGCAAAGCGTCCAGTGAAATGTATCTGGCTAAA
TAGATAGCTATTGCTTGCGCACACTCGTCGCCTCTAGTAGTCATTATGCT
GGATTGTGATTCTGCTGACCAAGTACCTCAGCGGCGACTATGGCGCCCAC
AAGGACTTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_295:751..1412+

>Gvermi2197.t1 ID=Gvermi2197.t1|Name=Gvermi2197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=204bp|location=Sequence derived from alignment at ScGOVlb_295:751..1412+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATGTGCTGCTGGAAAAGAATGCTCGGCAACACGGTGATACGGAGGC
GTCGACGGAAGAGATTGACGAAGTCGTCATTGAAGAGGATGATGGAGGTG
ACGACGAGTACGAAGAGGAAATTGTTGACTCCAGCAACATTGCAGTGCTG
TTTGGCAAGCAAAGCTACCTCAGCGGCGACTATGGCGCCCACAAGGACTT
GTAG
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