Gvermi2195.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2195.t1
Unique NameGvermi2195.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_5846contigScGOVlb_5846:75..912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2195Gvermi2195Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_5846 75..912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2195.t1Gvermi2195.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_5846 75..912 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2195.t1.start1Gvermi2195.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_5846 75..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2195.t1.CDS1Gvermi2195.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_5846 75..563 +
Gvermi2195.t1.CDS2Gvermi2195.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_5846 631..912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2195.t1.exon1Gvermi2195.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_5846 75..563 +
Gvermi2195.t1.exon2Gvermi2195.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_5846 631..912 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2195.t1.intron1Gvermi2195.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_5846 564..630 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2195.t1.stop1Gvermi2195.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_5846 910..912 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2195.t1 ID=Gvermi2195.t1|Name=Gvermi2195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=257bp
MWMSGKLEAKDNTPVCNSEMNQDSKVLLALIEDFVEVMATSREGTRGSWN
FSSLTPLTAINKLILREELSDLANFFKRSVLEFALHGAATAHGTLGTNKA
DGLATHELVEIGVARCEKVNDGGIVTTKIDEPLIVEAALSLNTLVEYSAN
KLVEADEKSELGRTEELNGTYKSHEAGRSAYGVLAIKCKEPVDPLKWIES
SIEAPFEGTVPPFCLPDHLFGSDIVFFLQNPKTWADFVPILCQAKFQKDT
NQVDAM*
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spliced messenger RNA

>Gvermi2195.t1 ID=Gvermi2195.t1|Name=Gvermi2195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_5846:75..912+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGATGAGCGGAAAGCTGGAAGCAAAGGATAACACGCCCGTCTGTAA
CAGCGAAATGAACCAGGATTCGAAGGTTTTACTGGCGCTGATCGAGGATT
TTGTGGAAGTGATGGCGACGTCTAGAGAAGGGACCCGGGGCTCTTGGAAT
TTCAGCAGCCTCACGCCATTGACGGCAATCAACAAGCTTATTTTACGGGA
AGAATTGTCAGACCTTGCGAACTTTTTTAAACGGTCAGTGTTGGAATTTG
CCCTGCATGGCGCTGCAACTGCACACGGCACACTCGGCACCAACAAGGCT
GATGGACTGGCCACACATGAACTTGTAGAGATAGGCGTGGCGCGATGTGA
AAAAGTGAACGATGGCGGCATTGTGACTACCAAGATCGATGAGCCGCTGA
TCGTAGAGGCTGCGCTCTCTCTCAACACTTTGGTCGAATACTCAGCGAAC
AAACTCGTCGAGGCCGACGAGAAGAGCGAGCTCGGAAGGACGGAAGAACT
GAATGGGACATATAAAAGCCATGAGGCTGGGCGAAGCGCATACGGCGTAC
TAGCCATCAAGTGCAAGGAACCGGTGGATCCATTGAAATGGATCGAGAGT
TCGATTGAAGCTCCGTTTGAGGGCACGGTGCCTCCCTTTTGTTTACCAGA
CCATTTGTTTGGCTCTGACATCGTATTCTTTCTTCAAAATCCCAAGACCT
GGGCTGACTTTGTTCCGATCCTTTGCCAGGCCAAATTTCAAAAGGATACG
AACCAAGTTGATGCCATGTGA
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protein sequence of Gvermi2195.t1

>Gvermi2195.t1 ID=Gvermi2195.t1|Name=Gvermi2195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=257bp
MWMSGKLEAKDNTPVCNSEMNQDSKVLLALIEDFVEVMATSREGTRGSWN
FSSLTPLTAINKLILREELSDLANFFKRSVLEFALHGAATAHGTLGTNKA
DGLATHELVEIGVARCEKVNDGGIVTTKIDEPLIVEAALSLNTLVEYSAN
KLVEADEKSELGRTEELNGTYKSHEAGRSAYGVLAIKCKEPVDPLKWIES
SIEAPFEGTVPPFCLPDHLFGSDIVFFLQNPKTWADFVPILCQAKFQKDT
NQVDAM*
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mRNA from alignment at ScGOVlb_5846:75..912+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2195.t1 ID=Gvermi2195.t1|Name=Gvermi2195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=838bp|location=Sequence derived from alignment at ScGOVlb_5846:75..912+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGATGAGCGGAAAGCTGGAAGCAAAGGATAACACGCCCGTCTGTAA
CAGCGAAATGAACCAGGATTCGAAGGTTTTACTGGCGCTGATCGAGGATT
TTGTGGAAGTGATGGCGACGTCTAGAGAAGGGACCCGGGGCTCTTGGAAT
TTCAGCAGCCTCACGCCATTGACGGCAATCAACAAGCTTATTTTACGGGA
AGAATTGTCAGACCTTGCGAACTTTTTTAAACGGTCAGTGTTGGAATTTG
CCCTGCATGGCGCTGCAACTGCACACGGCACACTCGGCACCAACAAGGCT
GATGGACTGGCCACACATGAACTTGTAGAGATAGGCGTGGCGCGATGTGA
AAAAGTGAACGATGGCGGCATTGTGACTACCAAGATCGATGAGCCGCTGA
TCGTAGAGGCTGCGCTCTCTCTCAACACTTTGGTCGAATACTCAGCGAAC
AAACTCGTCGAGGCCGACGAGAAGAGCGAGCTCGGAAGGGTTTCGATTTG
AGGAGCTCCTGGTTCCGGCGTTGCGTGCCAATTTTTTAGACGCAATTTTC
AACCAGACGGAAGAACTGAATGGGACATATAAAAGCCATGAGGCTGGGCG
AAGCGCATACGGCGTACTAGCCATCAAGTGCAAGGAACCGGTGGATCCAT
TGAAATGGATCGAGAGTTCGATTGAAGCTCCGTTTGAGGGCACGGTGCCT
CCCTTTTGTTTACCAGACCATTTGTTTGGCTCTGACATCGTATTCTTTCT
TCAAAATCCCAAGACCTGGGCTGACTTTGTTCCGATCCTTTGCCAGGCCA
AATTTCAAAAGGATACGAACCAAGTTGATGCCATGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_5846:75..912+

>Gvermi2195.t1 ID=Gvermi2195.t1|Name=Gvermi2195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=771bp|location=Sequence derived from alignment at ScGOVlb_5846:75..912+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGATGAGCGGAAAGCTGGAAGCAAAGGATAACACGCCCGTCTGTAA
CAGCGAAATGAACCAGGATTCGAAGGTTTTACTGGCGCTGATCGAGGATT
TTGTGGAAGTGATGGCGACGTCTAGAGAAGGGACCCGGGGCTCTTGGAAT
TTCAGCAGCCTCACGCCATTGACGGCAATCAACAAGCTTATTTTACGGGA
AGAATTGTCAGACCTTGCGAACTTTTTTAAACGGTCAGTGTTGGAATTTG
CCCTGCATGGCGCTGCAACTGCACACGGCACACTCGGCACCAACAAGGCT
GATGGACTGGCCACACATGAACTTGTAGAGATAGGCGTGGCGCGATGTGA
AAAAGTGAACGATGGCGGCATTGTGACTACCAAGATCGATGAGCCGCTGA
TCGTAGAGGCTGCGCTCTCTCTCAACACTTTGGTCGAATACTCAGCGAAC
AAACTCGTCGAGGCCGACGAGAAGAGCGAGCTCGGAAGGACGGAAGAACT
GAATGGGACATATAAAAGCCATGAGGCTGGGCGAAGCGCATACGGCGTAC
TAGCCATCAAGTGCAAGGAACCGGTGGATCCATTGAAATGGATCGAGAGT
TCGATTGAAGCTCCGTTTGAGGGCACGGTGCCTCCCTTTTGTTTACCAGA
CCATTTGTTTGGCTCTGACATCGTATTCTTTCTTCAAAATCCCAAGACCT
GGGCTGACTTTGTTCCGATCCTTTGCCAGGCCAAATTTCAAAAGGATACG
AACCAAGTTGATGCCATGTGA
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