Gvermi2180.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2180.t1
Unique NameGvermi2180.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_52contigScGOVlb_52:92397..93476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272562.CA_C1005
Max annot lvl186801|Clostridia
Evalue5.85e-30
EggNOG OGs2DN5M@1|root,32VPD@2|Bacteria,1VDP0@1239|Firmicutes,24P5W@186801|Clostridia,36SS5@31979|Clostridiaceae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2180Gvermi2180Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_52 92397..93476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2180.t1Gvermi2180.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_52 92397..93476 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2180.t1.start1Gvermi2180.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_52 92397..92399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2180.t1.CDS1Gvermi2180.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_52 92397..93012 +
Gvermi2180.t1.CDS2Gvermi2180.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_52 93088..93476 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2180.t1.exon1Gvermi2180.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_52 92397..93012 +
Gvermi2180.t1.exon2Gvermi2180.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_52 93088..93476 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2180.t1.intron1Gvermi2180.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_52 93013..93087 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2180.t1.stop1Gvermi2180.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_52 93474..93476 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2180.t1 ID=Gvermi2180.t1|Name=Gvermi2180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=335bp
MERVLSNEEFNLLDEQVILVKAEGNPVTPPNRASGPSNFPVSPPSGGRPS
RPVSGYRTPPKVVDQGLGAGGNPAGAGGNPEFDDNDRCTAPQKQKLDEIN
SEHPSFYSKKKQFAEQCELDENVQDGKIEIVYRIKENPALVREAERAGRD
QAAQRSMNNLVEQLAMGNKNPGIGTEPLFNGVFELRGKNRARVYYREVDG
KIEILGKTYMLIKNISFVRPNLLEEIQDIEDYNVDVFVELEDGSNYTVVV
ATAKNIVSLMDKEKTNFSEPGEPFIIVRKLTKEIITEAIEAYAENDAYWL
KSYHFAGEIDTGVFNKLQDEQTEYFKELDELDNS*
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spliced messenger RNA

>Gvermi2180.t1 ID=Gvermi2180.t1|Name=Gvermi2180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_52:92397..93476+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGAGTACTCTCAAATGAAGAGTTTAATTTATTGGATGAGCAAGT
GATTCTGGTTAAAGCTGAGGGTAATCCAGTCACTCCTCCAAACAGAGCAT
CAGGGCCAAGTAATTTTCCAGTTTCACCACCTTCTGGTGGTAGACCTAGT
CGTCCTGTATCGGGTTATCGCACACCGCCTAAAGTGGTTGATCAAGGGTT
GGGTGCGGGAGGTAACCCGGCTGGAGCAGGTGGAAATCCTGAGTTTGATG
ACAACGATCGTTGCACAGCTCCACAAAAACAAAAATTGGATGAAATTAAT
TCTGAACATCCAAGTTTTTATTCTAAGAAAAAACAATTCGCTGAACAGTG
TGAATTAGACGAAAACGTCCAAGACGGAAAAATAGAAATTGTTTACAGAA
TAAAAGAAAATCCTGCCCTAGTTCGGGAAGCAGAACGAGCAGGACGTGAT
CAGGCTGCCCAGAGATCTATGAACAATTTAGTAGAGCAACTAGCCATGGG
CAACAAAAACCCTGGAATAGGGACAGAGCCTCTTTTTAATGGTGTTTTTG
AATTACGAGGCAAAAACCGCGCTCGGGTTTATTATCGCGAAGTAGATGGG
AAAATTGAAATTTTAGGAAAAACTTATATGTTGATCAAAAATATTAGTTT
TGTACGTCCAAATTTACTTGAGGAAATTCAAGATATTGAGGACTATAATG
TCGATGTTTTCGTCGAGTTAGAAGATGGTTCTAATTATACTGTGGTTGTA
GCAACAGCGAAAAATATAGTATCCTTAATGGATAAGGAGAAAACAAACTT
TTCGGAACCAGGCGAACCTTTTATCATTGTTAGAAAATTGACAAAGGAGA
TTATTACTGAAGCTATCGAAGCTTATGCAGAAAACGATGCGTATTGGTTA
AAATCTTATCATTTCGCAGGAGAAATTGATACTGGTGTATTCAATAAATT
ACAAGATGAACAAACAGAATATTTTAAAGAATTAGACGAATTAGATAATT
CTTAA
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protein sequence of Gvermi2180.t1

>Gvermi2180.t1 ID=Gvermi2180.t1|Name=Gvermi2180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=335bp
MERVLSNEEFNLLDEQVILVKAEGNPVTPPNRASGPSNFPVSPPSGGRPS
RPVSGYRTPPKVVDQGLGAGGNPAGAGGNPEFDDNDRCTAPQKQKLDEIN
SEHPSFYSKKKQFAEQCELDENVQDGKIEIVYRIKENPALVREAERAGRD
QAAQRSMNNLVEQLAMGNKNPGIGTEPLFNGVFELRGKNRARVYYREVDG
KIEILGKTYMLIKNISFVRPNLLEEIQDIEDYNVDVFVELEDGSNYTVVV
ATAKNIVSLMDKEKTNFSEPGEPFIIVRKLTKEIITEAIEAYAENDAYWL
KSYHFAGEIDTGVFNKLQDEQTEYFKELDELDNS*
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mRNA from alignment at ScGOVlb_52:92397..93476+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2180.t1 ID=Gvermi2180.t1|Name=Gvermi2180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_52:92397..93476+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGAGTACTCTCAAATGAAGAGTTTAATTTATTGGATGAGCAAGT
GATTCTGGTTAAAGCTGAGGGTAATCCAGTCACTCCTCCAAACAGAGCAT
CAGGGCCAAGTAATTTTCCAGTTTCACCACCTTCTGGTGGTAGACCTAGT
CGTCCTGTATCGGGTTATCGCACACCGCCTAAAGTGGTTGATCAAGGGTT
GGGTGCGGGAGGTAACCCGGCTGGAGCAGGTGGAAATCCTGAGTTTGATG
ACAACGATCGTTGCACAGCTCCACAAAAACAAAAATTGGATGAAATTAAT
TCTGAACATCCAAGTTTTTATTCTAAGAAAAAACAATTCGCTGAACAGTG
TGAATTAGACGAAAACGTCCAAGACGGAAAAATAGAAATTGTTTACAGAA
TAAAAGAAAATCCTGCCCTAGTTCGGGAAGCAGAACGAGCAGGACGTGAT
CAGGCTGCCCAGAGATCTATGAACAATTTAGTAGAGCAACTAGCCATGGG
CAACAAAAACCCTGGAATAGGGACAGAGCCTCTTTTTAATGGTGTTTTTG
AATTACGAGGCAAAAACCGCGCTCGGGTTTATTATCGCGAAGTAGATGGG
AAAATTGAAATTTTAGGTAAATCCGTAAAAAATAACCAACAAAAAGTAAT
AGATATTTTAAAAAATATGTATTGATAATTATTTAATTAAGGAAAAACTT
ATATGTTGATCAAAAATATTAGTTTTGTACGTCCAAATTTACTTGAGGAA
ATTCAAGATATTGAGGACTATAATGTCGATGTTTTCGTCGAGTTAGAAGA
TGGTTCTAATTATACTGTGGTTGTAGCAACAGCGAAAAATATAGTATCCT
TAATGGATAAGGAGAAAACAAACTTTTCGGAACCAGGCGAACCTTTTATC
ATTGTTAGAAAATTGACAAAGGAGATTATTACTGAAGCTATCGAAGCTTA
TGCAGAAAACGATGCGTATTGGTTAAAATCTTATCATTTCGCAGGAGAAA
TTGATACTGGTGTATTCAATAAATTACAAGATGAACAAACAGAATATTTT
AAAGAATTAGACGAATTAGATAATTCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_52:92397..93476+

>Gvermi2180.t1 ID=Gvermi2180.t1|Name=Gvermi2180.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1005bp|location=Sequence derived from alignment at ScGOVlb_52:92397..93476+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGAGTACTCTCAAATGAAGAGTTTAATTTATTGGATGAGCAAGT
GATTCTGGTTAAAGCTGAGGGTAATCCAGTCACTCCTCCAAACAGAGCAT
CAGGGCCAAGTAATTTTCCAGTTTCACCACCTTCTGGTGGTAGACCTAGT
CGTCCTGTATCGGGTTATCGCACACCGCCTAAAGTGGTTGATCAAGGGTT
GGGTGCGGGAGGTAACCCGGCTGGAGCAGGTGGAAATCCTGAGTTTGATG
ACAACGATCGTTGCACAGCTCCACAAAAACAAAAATTGGATGAAATTAAT
TCTGAACATCCAAGTTTTTATTCTAAGAAAAAACAATTCGCTGAACAGTG
TGAATTAGACGAAAACGTCCAAGACGGAAAAATAGAAATTGTTTACAGAA
TAAAAGAAAATCCTGCCCTAGTTCGGGAAGCAGAACGAGCAGGACGTGAT
CAGGCTGCCCAGAGATCTATGAACAATTTAGTAGAGCAACTAGCCATGGG
CAACAAAAACCCTGGAATAGGGACAGAGCCTCTTTTTAATGGTGTTTTTG
AATTACGAGGCAAAAACCGCGCTCGGGTTTATTATCGCGAAGTAGATGGG
AAAATTGAAATTTTAGGAAAAACTTATATGTTGATCAAAAATATTAGTTT
TGTACGTCCAAATTTACTTGAGGAAATTCAAGATATTGAGGACTATAATG
TCGATGTTTTCGTCGAGTTAGAAGATGGTTCTAATTATACTGTGGTTGTA
GCAACAGCGAAAAATATAGTATCCTTAATGGATAAGGAGAAAACAAACTT
TTCGGAACCAGGCGAACCTTTTATCATTGTTAGAAAATTGACAAAGGAGA
TTATTACTGAAGCTATCGAAGCTTATGCAGAAAACGATGCGTATTGGTTA
AAATCTTATCATTTCGCAGGAGAAATTGATACTGGTGTATTCAATAAATT
ACAAGATGAACAAACAGAATATTTTAAAGAATTAGACGAATTAGATAATT
CTTAA
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