Gvermi2173.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2173.t1
Unique NameGvermi2173.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_52contigScGOVlb_52:53000..53644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWM4
Preferred namerps3
PFAMsKH_2,Ribosomal_S3_C
Max annot lvl2759|Eukaryota
KEGG koko:K02982
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue6.04e-109
EggNOG OGsCOG0092@1|root,2QV63@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2173Gvermi2173Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_52 53000..53644 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2173.t1.start1Gvermi2173.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_52 53000..53002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2173.t1.CDS1Gvermi2173.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_52 53000..53644 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2173.t1.exon1Gvermi2173.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_52 53000..53644 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2173.t1.stop1Gvermi2173.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_52 53642..53644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2173.t1Gvermi2173.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_52 53000..53644 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2173.t1 ID=Gvermi2173.t1|Name=Gvermi2173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=215bp
MGQKTHPLGFRLGITQEHRSTWYANFNQYANLLEEDDKIRTYIKTIAKSN
SIANVQINRNGLKDQIHLNIETGKPGILVGDRGTGLERLLKNLKKVVPKN
RQLTINVFEVEKVDLDASLLADLVAEQLEKRIAFRRAIRDALQRAQKQNV
NGIKIQVSGRLNGAEIARSEWIREGRVPLQTLRADIDYATQEANTIYGVL
GIKVWLFKSEILSK*
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spliced messenger RNA

>Gvermi2173.t1 ID=Gvermi2173.t1|Name=Gvermi2173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_52:53000..53644+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCAAAAAACACATCCTTTAGGATTTAGATTAGGTATTACACAAGA
GCATAGATCTACTTGGTACGCTAATTTTAATCAATATGCCAACCTTCTAG
AGGAAGATGATAAAATTAGAACTTATATAAAAACTATTGCAAAATCGAAT
AGTATTGCGAATGTTCAAATAAATCGGAATGGATTAAAGGATCAAATTCA
CTTAAATATTGAAACAGGAAAGCCAGGAATTCTAGTTGGTGACCGTGGGA
CTGGTCTTGAAAGATTACTAAAGAATCTTAAAAAAGTGGTACCAAAGAAC
CGTCAACTTACAATTAATGTTTTTGAAGTAGAAAAAGTTGATTTAGATGC
TTCTCTTCTTGCCGATTTAGTTGCTGAGCAATTAGAAAAACGTATTGCTT
TTAGAAGAGCAATTCGAGACGCTTTACAACGAGCTCAAAAACAAAATGTC
AATGGTATTAAAATTCAAGTTTCAGGCCGTTTAAATGGGGCTGAAATTGC
CCGAAGTGAATGGATTCGCGAAGGAAGAGTTCCACTTCAAACTTTACGTG
CGGATATTGATTATGCTACACAAGAAGCCAATACTATTTATGGTGTTTTA
GGAATTAAAGTTTGGTTATTTAAAAGTGAAATTTTGTCGAAGTAA
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protein sequence of Gvermi2173.t1

>Gvermi2173.t1 ID=Gvermi2173.t1|Name=Gvermi2173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=215bp
MGQKTHPLGFRLGITQEHRSTWYANFNQYANLLEEDDKIRTYIKTIAKSN
SIANVQINRNGLKDQIHLNIETGKPGILVGDRGTGLERLLKNLKKVVPKN
RQLTINVFEVEKVDLDASLLADLVAEQLEKRIAFRRAIRDALQRAQKQNV
NGIKIQVSGRLNGAEIARSEWIREGRVPLQTLRADIDYATQEANTIYGVL
GIKVWLFKSEILSK*
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mRNA from alignment at ScGOVlb_52:53000..53644+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2173.t1 ID=Gvermi2173.t1|Name=Gvermi2173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_52:53000..53644+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCAAAAAACACATCCTTTAGGATTTAGATTAGGTATTACACAAGA
GCATAGATCTACTTGGTACGCTAATTTTAATCAATATGCCAACCTTCTAG
AGGAAGATGATAAAATTAGAACTTATATAAAAACTATTGCAAAATCGAAT
AGTATTGCGAATGTTCAAATAAATCGGAATGGATTAAAGGATCAAATTCA
CTTAAATATTGAAACAGGAAAGCCAGGAATTCTAGTTGGTGACCGTGGGA
CTGGTCTTGAAAGATTACTAAAGAATCTTAAAAAAGTGGTACCAAAGAAC
CGTCAACTTACAATTAATGTTTTTGAAGTAGAAAAAGTTGATTTAGATGC
TTCTCTTCTTGCCGATTTAGTTGCTGAGCAATTAGAAAAACGTATTGCTT
TTAGAAGAGCAATTCGAGACGCTTTACAACGAGCTCAAAAACAAAATGTC
AATGGTATTAAAATTCAAGTTTCAGGCCGTTTAAATGGGGCTGAAATTGC
CCGAAGTGAATGGATTCGCGAAGGAAGAGTTCCACTTCAAACTTTACGTG
CGGATATTGATTATGCTACACAAGAAGCCAATACTATTTATGGTGTTTTA
GGAATTAAAGTTTGGTTATTTAAAAGTGAAATTTTGTCGAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_52:53000..53644+

>Gvermi2173.t1 ID=Gvermi2173.t1|Name=Gvermi2173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=645bp|location=Sequence derived from alignment at ScGOVlb_52:53000..53644+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCAAAAAACACATCCTTTAGGATTTAGATTAGGTATTACACAAGA
GCATAGATCTACTTGGTACGCTAATTTTAATCAATATGCCAACCTTCTAG
AGGAAGATGATAAAATTAGAACTTATATAAAAACTATTGCAAAATCGAAT
AGTATTGCGAATGTTCAAATAAATCGGAATGGATTAAAGGATCAAATTCA
CTTAAATATTGAAACAGGAAAGCCAGGAATTCTAGTTGGTGACCGTGGGA
CTGGTCTTGAAAGATTACTAAAGAATCTTAAAAAAGTGGTACCAAAGAAC
CGTCAACTTACAATTAATGTTTTTGAAGTAGAAAAAGTTGATTTAGATGC
TTCTCTTCTTGCCGATTTAGTTGCTGAGCAATTAGAAAAACGTATTGCTT
TTAGAAGAGCAATTCGAGACGCTTTACAACGAGCTCAAAAACAAAATGTC
AATGGTATTAAAATTCAAGTTTCAGGCCGTTTAAATGGGGCTGAAATTGC
CCGAAGTGAATGGATTCGCGAAGGAAGAGTTCCACTTCAAACTTTACGTG
CGGATATTGATTATGCTACACAAGAAGCCAATACTATTTATGGTGTTTTA
GGAATTAAAGTTTGGTTATTTAAAAGTGAAATTTTGTCGAAGTAA
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