Gvermi2165.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2165.t1
Unique NameGvermi2165.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_52contigScGOVlb_52:1142..1732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2165Gvermi2165Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_52 1142..1732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2165.t1.CDS1Gvermi2165.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_52 1142..1732 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2165.t1.exon1Gvermi2165.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_52 1142..1732 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2165.t1.stop1Gvermi2165.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_52 1730..1732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2165.t1Gvermi2165.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_52 1142..1732 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2165.t1 ID=Gvermi2165.t1|Name=Gvermi2165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=197bp
EICLSPNQRLEDDSLISQNLESGKSNELEVYQEPYLLSYDDAIAVLKSRY
GRIDALNFITVDNGEFKIQEQQAAKKIEHAVCFGIKTEDYDFSQDQAKEI
NANGGIVAYLRKGNKLPSLDLIRAYQNAIKNFCEDPNQSVRNDRSTFRGE
PSITFFNQETRQVVIFDQETKIFITAYKLAERSVDEYLTTGNIGSN*
back to top

spliced messenger RNA

>Gvermi2165.t1 ID=Gvermi2165.t1|Name=Gvermi2165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=591bp|location=Sequence derived from alignment at ScGOVlb_52:1142..1732+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GAGATTTGTTTATCCCCAAATCAACGATTAGAAGATGATTCTCTGATCTC
CCAAAATTTAGAATCTGGAAAATCTAATGAATTAGAAGTCTATCAAGAAC
CATATCTTCTAAGCTATGATGATGCTATAGCTGTATTAAAATCAAGATAT
GGCCGAATAGATGCCCTAAATTTTATAACTGTTGATAATGGTGAGTTCAA
AATCCAAGAACAACAAGCTGCAAAAAAAATAGAACATGCGGTTTGTTTTG
GAATAAAGACAGAGGACTATGATTTTTCACAAGACCAAGCAAAAGAAATC
AATGCTAACGGTGGAATCGTGGCTTATCTGCGAAAAGGTAACAAATTACC
AAGCCTGGATTTGATCAGGGCTTATCAAAATGCTATCAAAAATTTTTGTG
AAGATCCGAATCAATCGGTTAGAAATGATAGGAGCACTTTTCGAGGGGAA
CCTTCTATTACGTTTTTCAATCAAGAAACTCGACAAGTTGTTATTTTCGA
TCAAGAAACAAAGATTTTTATAACCGCTTATAAACTTGCTGAACGTAGTG
TTGATGAGTATTTAACAACTGGTAATATTGGAAGTAATTAA
back to top

protein sequence of Gvermi2165.t1

>Gvermi2165.t1 ID=Gvermi2165.t1|Name=Gvermi2165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=197bp
EICLSPNQRLEDDSLISQNLESGKSNELEVYQEPYLLSYDDAIAVLKSRY
GRIDALNFITVDNGEFKIQEQQAAKKIEHAVCFGIKTEDYDFSQDQAKEI
NANGGIVAYLRKGNKLPSLDLIRAYQNAIKNFCEDPNQSVRNDRSTFRGE
PSITFFNQETRQVVIFDQETKIFITAYKLAERSVDEYLTTGNIGSN*
back to top

mRNA from alignment at ScGOVlb_52:1142..1732+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2165.t1 ID=Gvermi2165.t1|Name=Gvermi2165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=591bp|location=Sequence derived from alignment at ScGOVlb_52:1142..1732+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GAGATTTGTTTATCCCCAAATCAACGATTAGAAGATGATTCTCTGATCTC
CCAAAATTTAGAATCTGGAAAATCTAATGAATTAGAAGTCTATCAAGAAC
CATATCTTCTAAGCTATGATGATGCTATAGCTGTATTAAAATCAAGATAT
GGCCGAATAGATGCCCTAAATTTTATAACTGTTGATAATGGTGAGTTCAA
AATCCAAGAACAACAAGCTGCAAAAAAAATAGAACATGCGGTTTGTTTTG
GAATAAAGACAGAGGACTATGATTTTTCACAAGACCAAGCAAAAGAAATC
AATGCTAACGGTGGAATCGTGGCTTATCTGCGAAAAGGTAACAAATTACC
AAGCCTGGATTTGATCAGGGCTTATCAAAATGCTATCAAAAATTTTTGTG
AAGATCCGAATCAATCGGTTAGAAATGATAGGAGCACTTTTCGAGGGGAA
CCTTCTATTACGTTTTTCAATCAAGAAACTCGACAAGTTGTTATTTTCGA
TCAAGAAACAAAGATTTTTATAACCGCTTATAAACTTGCTGAACGTAGTG
TTGATGAGTATTTAACAACTGGTAATATTGGAAGTAATTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_52:1142..1732+

>Gvermi2165.t1 ID=Gvermi2165.t1|Name=Gvermi2165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=591bp|location=Sequence derived from alignment at ScGOVlb_52:1142..1732+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GAGATTTGTTTATCCCCAAATCAACGATTAGAAGATGATTCTCTGATCTC
CCAAAATTTAGAATCTGGAAAATCTAATGAATTAGAAGTCTATCAAGAAC
CATATCTTCTAAGCTATGATGATGCTATAGCTGTATTAAAATCAAGATAT
GGCCGAATAGATGCCCTAAATTTTATAACTGTTGATAATGGTGAGTTCAA
AATCCAAGAACAACAAGCTGCAAAAAAAATAGAACATGCGGTTTGTTTTG
GAATAAAGACAGAGGACTATGATTTTTCACAAGACCAAGCAAAAGAAATC
AATGCTAACGGTGGAATCGTGGCTTATCTGCGAAAAGGTAACAAATTACC
AAGCCTGGATTTGATCAGGGCTTATCAAAATGCTATCAAAAATTTTTGTG
AAGATCCGAATCAATCGGTTAGAAATGATAGGAGCACTTTTCGAGGGGAA
CCTTCTATTACGTTTTTCAATCAAGAAACTCGACAAGTTGTTATTTTCGA
TCAAGAAACAAAGATTTTTATAACCGCTTATAAACTTGCTGAACGTAGTG
TTGATGAGTATTTAACAACTGGTAATATTGGAAGTAATTAA
back to top