Gvermi2124.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2124.t1
Unique NameGvermi2124.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length610
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:243400..246492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps23829
Max annot lvl2836|Bacillariophyta
Evalue8.45e-78
EggNOG OGs2D7C5@1|root,2T5DU@2759|Eukaryota,2XF6P@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2124Gvermi2124Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 243400..246492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2124.t1Gvermi2124.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 243400..246492 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2124.t1.stop1Gvermi2124.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 243400..243402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2124.t1.CDS1Gvermi2124.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 243400..243783 -
Gvermi2124.t1.CDS2Gvermi2124.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 243867..244094 -
Gvermi2124.t1.CDS3Gvermi2124.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 244190..244805 -
Gvermi2124.t1.CDS4Gvermi2124.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 245891..246492 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2124.t1.exon1Gvermi2124.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 243400..243783 -
Gvermi2124.t1.exon2Gvermi2124.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 243867..244094 -
Gvermi2124.t1.exon3Gvermi2124.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 244190..244805 -
Gvermi2124.t1.exon4Gvermi2124.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 245891..246492 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2124.t1.intron1Gvermi2124.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 243784..243866 -
Gvermi2124.t1.intron2Gvermi2124.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 244095..244189 -
Gvermi2124.t1.intron3Gvermi2124.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 244806..245890 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2124.t1.start1Gvermi2124.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 246490..246492 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2124.t1 ID=Gvermi2124.t1|Name=Gvermi2124.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=610bp
MLVRGDDTTTTVVKNGYLVDRQCISLCENSPPGTPCAPDGINVFYEIPKH
TGWCKRLPVCVASGFVLMSDSPTTGGADDGRYSVVLEFSGAANMTVYEYI
LDGTLGQFPLVTVEYDNEAVVGGDSDGGVPVVDMLTSIRDPWDNRTFENV
TEAYQVECADSEAPSVEFNNYCFRSDVTVSPAAALAFDDSSSAMLVIESN
GGKNAIELQASLKLVGQDNDSVVTTESAKQRMAPPSLPKGRSRKGGFFLC
CNSRTGSAAAAAAVVSPEEMRAYEEQKLLAKQVRIQHAQSKKERLKAKER
AARRSQKYATVPEGILIYRLDTVQRTLQLVSSNSSNSNSSNSIVQHCTVQ
SAQAAPDKNRRAILITTTEGDAHTLTACEQRTATAWLEAMNLMHAKSSVG
GGLFRKSSTSSRWSKERLKDSELNHIEDQYMNLANYLHKLIRAGALPGGK
KGSGGAGGISYSMEKVQGADNGDGVAEEALEAYEEVFRRLQLDPVFPYLN
SMTRLNDPGDVGYENIDKQVIQRDLPAYDDMTKMEVAQALVQQAEAAMPS
LVEICKALAGSLGMEEVGIGPVKDAAAAIRKSDKKYGGDLLKVTDYCRAL
LVVRDLPSL*
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spliced messenger RNA

>Gvermi2124.t1 ID=Gvermi2124.t1|Name=Gvermi2124.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at ScGOVlb_191:243400..246492- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTCCGTGGCGATGATACGACGACGACTGTCGTCAAGAATGGTTA
CCTGGTGGACCGCCAGTGCATCAGCTTATGCGAAAACTCGCCGCCGGGCA
CGCCGTGCGCCCCGGATGGAATCAACGTTTTCTACGAAATCCCCAAGCAC
ACTGGATGGTGCAAGCGCTTGCCCGTTTGCGTGGCAAGCGGCTTTGTTCT
CATGAGCGACAGTCCAACGACTGGTGGTGCTGATGACGGTAGATACTCTG
TCGTGCTTGAATTTTCTGGCGCCGCCAATATGACAGTCTACGAGTACATT
TTGGATGGTACGCTTGGTCAGTTTCCGCTCGTGACGGTCGAGTACGACAA
TGAAGCTGTTGTTGGTGGTGATAGTGATGGTGGCGTTCCAGTTGTGGACA
TGCTAACGAGCATTCGCGATCCCTGGGACAATCGCACGTTCGAGAACGTA
ACGGAAGCGTATCAGGTAGAGTGCGCCGATTCCGAGGCGCCCAGCGTCGA
ATTCAACAATTACTGCTTTCGATCCGACGTGACTGTTTCGCCAGCAGCAG
CACTCGCATTCGACGATAGCAGTAGTGCAATGCTGGTGATTGAGTCGAAC
GGGGGCAAGAACGCGATTGAACTGCAGGCGAGCCTCAAGCTGGTGGGACA
GGACAACGATTCCGTCGTTACCACGGAATCCGCCAAACAGCGCATGGCGC
CACCGTCCCTGCCCAAGGGCCGCTCCCGCAAGGGAGGATTCTTTTTGTGC
TGCAACAGCAGAACGGGTAGCGCCGCCGCCGCCGCCGCCGTGGTGAGCCC
GGAAGAAATGCGCGCCTACGAGGAGCAAAAGCTGCTGGCCAAGCAAGTGC
GGATCCAGCACGCGCAGTCCAAGAAGGAGCGCCTCAAGGCCAAGGAGCGG
GCGGCCCGCCGCTCCCAAAAGTACGCCACCGTGCCCGAGGGCATTTTAAT
TTACCGCCTCGACACGGTCCAGCGCACGCTGCAACTCGTGAGCAGCAATA
GCAGCAATAGCAATAGCAGCAATAGCATTGTGCAGCACTGTACCGTGCAG
AGCGCTCAGGCGGCGCCCGACAAGAACCGCCGGGCTATCTTGATTACCAC
CACGGAAGGAGATGCGCACACGCTCACGGCGTGCGAGCAGCGCACTGCGA
CGGCGTGGTTGGAAGCCATGAACCTCATGCACGCCAAGAGCAGCGTTGGC
GGTGGTTTGTTTCGCAAGTCGAGCACCAGCTCCCGCTGGAGCAAGGAACG
GCTCAAGGACTCGGAACTCAACCACATTGAGGACCAGTACATGAATTTGG
CCAATTACTTGCACAAGCTCATTCGCGCTGGCGCGCTTCCGGGCGGCAAA
AAGGGCAGCGGCGGAGCCGGTGGCATTTCCTACAGCATGGAAAAGGTCCA
GGGGGCGGACAACGGAGACGGAGTGGCCGAGGAAGCGCTCGAGGCCTACG
AAGAAGTCTTTCGCCGGTTGCAGCTCGATCCGGTCTTTCCCTACCTCAAC
AGCATGACGAGACTCAACGACCCCGGCGACGTGGGCTACGAAAACATCGA
CAAGCAGGTCATTCAGCGCGACCTGCCCGCGTACGACGACATGACCAAAA
TGGAAGTCGCGCAAGCGCTGGTCCAGCAAGCGGAGGCGGCCATGCCGAGC
CTGGTGGAAATATGCAAGGCCCTGGCGGGCAGTCTGGGCATGGAGGAAGT
CGGCATTGGCCCCGTCAAGGACGCGGCGGCGGCCATTCGCAAGTCGGACA
AAAAGTACGGCGGCGACTTGCTCAAGGTCACGGACTACTGCCGCGCCCTG
CTCGTGGTCCGCGACCTGCCCAGCCTCTAG
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protein sequence of Gvermi2124.t1

>Gvermi2124.t1 ID=Gvermi2124.t1|Name=Gvermi2124.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=610bp
MLVRGDDTTTTVVKNGYLVDRQCISLCENSPPGTPCAPDGINVFYEIPKH
TGWCKRLPVCVASGFVLMSDSPTTGGADDGRYSVVLEFSGAANMTVYEYI
LDGTLGQFPLVTVEYDNEAVVGGDSDGGVPVVDMLTSIRDPWDNRTFENV
TEAYQVECADSEAPSVEFNNYCFRSDVTVSPAAALAFDDSSSAMLVIESN
GGKNAIELQASLKLVGQDNDSVVTTESAKQRMAPPSLPKGRSRKGGFFLC
CNSRTGSAAAAAAVVSPEEMRAYEEQKLLAKQVRIQHAQSKKERLKAKER
AARRSQKYATVPEGILIYRLDTVQRTLQLVSSNSSNSNSSNSIVQHCTVQ
SAQAAPDKNRRAILITTTEGDAHTLTACEQRTATAWLEAMNLMHAKSSVG
GGLFRKSSTSSRWSKERLKDSELNHIEDQYMNLANYLHKLIRAGALPGGK
KGSGGAGGISYSMEKVQGADNGDGVAEEALEAYEEVFRRLQLDPVFPYLN
SMTRLNDPGDVGYENIDKQVIQRDLPAYDDMTKMEVAQALVQQAEAAMPS
LVEICKALAGSLGMEEVGIGPVKDAAAAIRKSDKKYGGDLLKVTDYCRAL
LVVRDLPSL*
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mRNA from alignment at ScGOVlb_191:243400..246492-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2124.t1 ID=Gvermi2124.t1|Name=Gvermi2124.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3093bp|location=Sequence derived from alignment at ScGOVlb_191:243400..246492- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGTCCGTGGCGATGATACGACGACGACTGTCGTCAAGAATGGTTA
CCTGGTGGACCGCCAGTGCATCAGCTTATGCGAAAACTCGCCGCCGGGCA
CGCCGTGCGCCCCGGATGGAATCAACGTTTTCTACGAAATCCCCAAGCAC
ACTGGATGGTGCAAGCGCTTGCCCGTTTGCGTGGCAAGCGGCTTTGTTCT
CATGAGCGACAGTCCAACGACTGGTGGTGCTGATGACGGTAGATACTCTG
TCGTGCTTGAATTTTCTGGCGCCGCCAATATGACAGTCTACGAGTACATT
TTGGATGGTACGCTTGGTCAGTTTCCGCTCGTGACGGTCGAGTACGACAA
TGAAGCTGTTGTTGGTGGTGATAGTGATGGTGGCGTTCCAGTTGTGGACA
TGCTAACGAGCATTCGCGATCCCTGGGACAATCGCACGTTCGAGAACGTA
ACGGAAGCGTATCAGGTAGAGTGCGCCGATTCCGAGGCGCCCAGCGTCGA
ATTCAACAATTACTGCTTTCGATCCGACGTGACTGTTTCGCCAGCAGCAG
CACTCGCATTCGACGATAGCAGTAGTGCAATGCTGGTGATTGAGTCGAAC
GGGTGCCCGGATCACAAGATTATGCAGGGGAGCAAGGGATTGATTGCCAA
TACGCAACCCCCGATTACCGCCAGCAGCACAACAGGTTGCGATGAGGCTG
GCTGCGGTGCTTGTGGAGCTTGCGGAGCTGGCTGCGGTGCTTGCGGAGCT
GGCTGCGGTGCTTGTGGCGCTGGCTGTGGTGCTGGCTGCGGGGCTTGTGG
CGCTGGCTGTGGTGCTGGATGCGGAGCTTGGGGTGCTGGCTGCGGCGCTG
GATGCGGAGCTTGTGGTGCTGGCTGTGGAGCTTGGGGTGCTGGCTGCGGT
GCTGGCTGCGGTGCTGGCTGCGGTGCTGGTTGCGGCGCTGGTGTTGGTTG
CAAAGAGAAGCCATCATGTGGTGCCGGCTGTGGCGCCGGCTGTGGCGCCG
GCTGTGGTGCTGGATACGAGGCCAAAAACATTGCCATTGATTGGGTCATT
GGGTCCTACGACAGGATGACGGCCAAGGTTGGTGACTCTGTCACCTTTAC
TTATTTACCTTTTCACACTGTGGCCATTCACGCATCGGCCTCTTGCAACG
AAACGGACAGCGTCATGCTCGCCGACTTGCTCGATTCACCATTTACGTAC
ACGTTTACGGAAGCAGACATTGGCGAATTGTCGTTTGCGTGCCAGGTTCC
GAGACACTGCGACCTTGGACAGCTTTTAACGTTCGATGTCATGCCAGCTT
CGAGTAATTGGACTGATGCTGGCGCGTGCGGTGCTGGATGCGGTGCTGGA
TGCGGTGCTGGATGCGGTGCTGGATGCGGTGCTGGATGCGGTGCTGGATG
CGGTGCTGCCCAATCACCAATAATCCACTAAGAGCCATGTGGAAAAATCA
ACAATAGGGAGATGGTGGTGGTGATGCTGGTGGTGGTGATGATAACAACG
AAAATGGTCAAATGGTGGTCAACAACAGCAGCAGCAGCAGCACAGCAACA
GCAACAGCAACAGCAACAACAACAGCGATGATTGCGAACCAGACGACGAC
GACGACGAACTGACGGGCCGACCCGGAACCATTTTGGAAGCGGCCTTTGT
GGATCCTTCCTTTTCGTGGCCCCCCGCCGACGGCCAGGGGCAAGAACGCG
ATTGAACTGCAGGCGAGCCTCAAGCTGGTGGGACAGGACAACGATTCCGT
CGTTACCACGGAATCCGCCAAACAGCGCATGGCGCCACCGTCCCTGCCCA
AGGGCCGCTCCCGCAAGGGAGGATTCTTTTTGTGCTGCAACAGCAGAACG
GGTAGCGCCGCCGCCGCCGCCGCCGTGGTGAGCCCGGAAGAAATGCGCGC
CTACGAGGAGCAAAAGCTGCTGGCCAAGCAAGTGCGGATCCAGCACGCGC
AGTCCAAGAAGGAGCGCCTCAAGGCCAAGGAGCGGGCGGCCCGCCGCTCC
CAAAAGTACGCCACCGTGCCCGAGGGCATTTTAATTTACCGCCTCGACAC
GGTCCAGCGCACGCTGCAACTCGTGAGCAGCAATAGCAGCAATAGCAATA
GCAGCAATAGCATTGTGCAGCACTGTACCGTGCAGAGCGCTCAGGCGGCG
CCCGACAAGAACCGCCGGGCTATCTTGATTACCACCACGGAAGGAGATGC
GCACACGCTCACGGCGTGCGAGCAGCGCACTGCGACGGCGTGGTTGGAAG
CCATGAACCTCATGCACGCCAAGAGCAGCGTTGGCGGTGGTTTGTTTCGC
AAGGTAAGCAAAAAGGCGCAGTTTTGTTTATTAGTTTACACATCTCTCGT
GCTCTGCTCTTCTCACACACGCGGGCTCTCACACAAATCGACAAACAGTC
GAGCACCAGCTCCCGCTGGAGCAAGGAACGGCTCAAGGACTCGGAACTCA
ACCACATTGAGGACCAGTACATGAATTTGGCCAATTACTTGCACAAGCTC
ATTCGCGCTGGCGCGCTTCCGGGCGGCAAAAAGGGCAGCGGCGGAGCCGG
TGGCATTTCCTACAGCATGGAAAAGGTCCAGGGGGCGGACAACGGAGACG
GAGTGGCCGAGGAAGCGCTCGAGGCCGTGGCCAAGCGCCGGGCTGTCATT
AAAGACTCGTGGGACTTTTACCGCATGATTTGCACAGCCTGCTCCGCGAC
CGCAACAAGTACGAAGAAGTCTTTCGCCGGTTGCAGCTCGATCCGGTCTT
TCCCTACCTCAACAGCATGACGAGACTCAACGACCCCGGCGACGTGGGCT
ACGAAAACATCGACAAGCAGGTCATTCAGCGCGACCTGCCCGCGTACGAC
GACATGACCAAAATGGAAGTCGCGCAAGCGCTGGTCCAGCAAGCGGAGGC
GGCCATGCCGAGCCTGGTGGAAATATGCAAGGCCCTGGCGGGCAGTCTGG
GCATGGAGGAAGTCGGCATTGGCCCCGTCAAGGACGCGGCGGCGGCCATT
CGCAAGTCGGACAAAAAGTACGGCGGCGACTTGCTCAAGGTCACGGACTA
CTGCCGCGCCCTGCTCGTGGTCCGCGACCTGCCCAGCCTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_191:243400..246492-

>Gvermi2124.t1 ID=Gvermi2124.t1|Name=Gvermi2124.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1830bp|location=Sequence derived from alignment at ScGOVlb_191:243400..246492- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGTCCGTGGCGATGATACGACGACGACTGTCGTCAAGAATGGTTA
CCTGGTGGACCGCCAGTGCATCAGCTTATGCGAAAACTCGCCGCCGGGCA
CGCCGTGCGCCCCGGATGGAATCAACGTTTTCTACGAAATCCCCAAGCAC
ACTGGATGGTGCAAGCGCTTGCCCGTTTGCGTGGCAAGCGGCTTTGTTCT
CATGAGCGACAGTCCAACGACTGGTGGTGCTGATGACGGTAGATACTCTG
TCGTGCTTGAATTTTCTGGCGCCGCCAATATGACAGTCTACGAGTACATT
TTGGATGGTACGCTTGGTCAGTTTCCGCTCGTGACGGTCGAGTACGACAA
TGAAGCTGTTGTTGGTGGTGATAGTGATGGTGGCGTTCCAGTTGTGGACA
TGCTAACGAGCATTCGCGATCCCTGGGACAATCGCACGTTCGAGAACGTA
ACGGAAGCGTATCAGGTAGAGTGCGCCGATTCCGAGGCGCCCAGCGTCGA
ATTCAACAATTACTGCTTTCGATCCGACGTGACTGTTTCGCCAGCAGCAG
CACTCGCATTCGACGATAGCAGTAGTGCAATGCTGGTGATTGAGTCGAAC
GGGGGCAAGAACGCGATTGAACTGCAGGCGAGCCTCAAGCTGGTGGGACA
GGACAACGATTCCGTCGTTACCACGGAATCCGCCAAACAGCGCATGGCGC
CACCGTCCCTGCCCAAGGGCCGCTCCCGCAAGGGAGGATTCTTTTTGTGC
TGCAACAGCAGAACGGGTAGCGCCGCCGCCGCCGCCGCCGTGGTGAGCCC
GGAAGAAATGCGCGCCTACGAGGAGCAAAAGCTGCTGGCCAAGCAAGTGC
GGATCCAGCACGCGCAGTCCAAGAAGGAGCGCCTCAAGGCCAAGGAGCGG
GCGGCCCGCCGCTCCCAAAAGTACGCCACCGTGCCCGAGGGCATTTTAAT
TTACCGCCTCGACACGGTCCAGCGCACGCTGCAACTCGTGAGCAGCAATA
GCAGCAATAGCAATAGCAGCAATAGCATTGTGCAGCACTGTACCGTGCAG
AGCGCTCAGGCGGCGCCCGACAAGAACCGCCGGGCTATCTTGATTACCAC
CACGGAAGGAGATGCGCACACGCTCACGGCGTGCGAGCAGCGCACTGCGA
CGGCGTGGTTGGAAGCCATGAACCTCATGCACGCCAAGAGCAGCGTTGGC
GGTGGTTTGTTTCGCAAGTCGAGCACCAGCTCCCGCTGGAGCAAGGAACG
GCTCAAGGACTCGGAACTCAACCACATTGAGGACCAGTACATGAATTTGG
CCAATTACTTGCACAAGCTCATTCGCGCTGGCGCGCTTCCGGGCGGCAAA
AAGGGCAGCGGCGGAGCCGGTGGCATTTCCTACAGCATGGAAAAGGTCCA
GGGGGCGGACAACGGAGACGGAGTGGCCGAGGAAGCGCTCGAGGCCTACG
AAGAAGTCTTTCGCCGGTTGCAGCTCGATCCGGTCTTTCCCTACCTCAAC
AGCATGACGAGACTCAACGACCCCGGCGACGTGGGCTACGAAAACATCGA
CAAGCAGGTCATTCAGCGCGACCTGCCCGCGTACGACGACATGACCAAAA
TGGAAGTCGCGCAAGCGCTGGTCCAGCAAGCGGAGGCGGCCATGCCGAGC
CTGGTGGAAATATGCAAGGCCCTGGCGGGCAGTCTGGGCATGGAGGAAGT
CGGCATTGGCCCCGTCAAGGACGCGGCGGCGGCCATTCGCAAGTCGGACA
AAAAGTACGGCGGCGACTTGCTCAAGGTCACGGACTACTGCCGCGCCCTG
CTCGTGGTCCGCGACCTGCCCAGCCTCTAG
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