Gvermi2101.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2101.t1
Unique NameGvermi2101.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:162713..165355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2101Gvermi2101Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 162713..165355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2101.t1Gvermi2101.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 162713..165355 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2101.t1.start1Gvermi2101.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 162713..162715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2101.t1.CDS1Gvermi2101.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 162713..163581 +
Gvermi2101.t1.CDS2Gvermi2101.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 165175..165355 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2101.t1.exon1Gvermi2101.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 162713..163581 +
Gvermi2101.t1.exon2Gvermi2101.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 165175..165355 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2101.t1.intron1Gvermi2101.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 163582..165174 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2101.t1.stop1Gvermi2101.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 165353..165355 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2101.t1 ID=Gvermi2101.t1|Name=Gvermi2101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=350bp
MVLTAAQIQAFFEEDEQMAIPHATVLQLRNEGINSPTDLNDFNKDSIKEV
AENLRKPTDRIPNPDPNAAPGSTIPRPAYVFGAKSQKCLNEACDLVRFYK
TIGRALTPANIRYAPIIKDFTQQWKALKDRKSNEDAEVPKISKALPLLKW
TEAFDDFLSRTCGSRTIPYSYVTRGEAAVPAGVPPLATDKPHSAEHGSVE
GDLVNRASHNHPLFCADNAEVYYLLEEACRGTSYVASLKPYQRAKNGRAA
YESLKKQYAGRDKWEAELSRQDNLLHTRMWKGQSNFSLENDDLDLVVEAP
TARTHEETTMGDSTDEEEEEVITTNEDNTEELTSGSYATLPSLEELFKV*
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spliced messenger RNA

>Gvermi2101.t1 ID=Gvermi2101.t1|Name=Gvermi2101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_191:162713..165355+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTACCGCAGCGCAGATTCAAGCCTTCTTTGAAGAGGATGAGCA
AATGGCGATTCCTCATGCCACGGTCCTGCAATTGCGCAACGAGGGGATCA
ACTCTCCTACTGACCTCAACGACTTTAACAAGGACTCTATCAAGGAAGTT
GCTGAGAACCTGCGGAAGCCAACTGACCGGATTCCCAATCCGGATCCGAA
CGCAGCGCCAGGGTCGACCATTCCCAGGCCTGCATATGTCTTTGGTGCCA
AGTCCCAAAAGTGTCTGAACGAGGCATGTGACCTTGTGCGCTTTTACAAG
ACAATTGGTCGTGCACTCACCCCTGCCAACATCCGGTATGCGCCAATTAT
CAAGGATTTCACGCAGCAGTGGAAGGCACTCAAGGACAGGAAGTCGAATG
AAGACGCGGAAGTCCCCAAGATCAGCAAGGCCTTGCCTTTGCTTAAGTGG
ACGGAGGCATTCGATGATTTTTTGAGCCGAACATGTGGATCAAGGACGAT
CCCATATTCGTATGTGACGCGCGGGGAAGCTGCGGTACCAGCTGGGGTAC
CGCCGCTCGCAACTGACAAACCTCACTCGGCAGAGCATGGATCGGTGGAG
GGAGACCTGGTCAACAGGGCGTCCCACAATCACCCGCTCTTTTGTGCGGA
CAACGCCGAGGTGTACTATCTCTTGGAGGAGGCGTGCCGTGGCACTTCCT
ATGTGGCGTCGTTGAAGCCGTACCAGCGTGCCAAGAATGGAAGAGCAGCG
TATGAATCCTTGAAAAAGCAGTATGCCGGACGCGACAAGTGGGAAGCTGA
ACTGTCGAGGCAGGACAATCTCCTGCACACACGAATGTGGAAAGGACAGT
CGAATTTTTCGTTGGAGAATGATGATCTAGATCTAGTAGTGGAAGCCCCG
ACAGCAAGAACTCACGAGGAGACTACAATGGGAGACTCTACTGATGAAGA
AGAGGAAGAAGTCATCACGACTAATGAGGATAATACTGAAGAGTTGACTT
CCGGTTCTTATGCAACGCTGCCTAGTCTAGAGGAGCTATTTAAAGTGTAA
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protein sequence of Gvermi2101.t1

>Gvermi2101.t1 ID=Gvermi2101.t1|Name=Gvermi2101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=350bp
MVLTAAQIQAFFEEDEQMAIPHATVLQLRNEGINSPTDLNDFNKDSIKEV
AENLRKPTDRIPNPDPNAAPGSTIPRPAYVFGAKSQKCLNEACDLVRFYK
TIGRALTPANIRYAPIIKDFTQQWKALKDRKSNEDAEVPKISKALPLLKW
TEAFDDFLSRTCGSRTIPYSYVTRGEAAVPAGVPPLATDKPHSAEHGSVE
GDLVNRASHNHPLFCADNAEVYYLLEEACRGTSYVASLKPYQRAKNGRAA
YESLKKQYAGRDKWEAELSRQDNLLHTRMWKGQSNFSLENDDLDLVVEAP
TARTHEETTMGDSTDEEEEEVITTNEDNTEELTSGSYATLPSLEELFKV*
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mRNA from alignment at ScGOVlb_191:162713..165355+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2101.t1 ID=Gvermi2101.t1|Name=Gvermi2101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2643bp|location=Sequence derived from alignment at ScGOVlb_191:162713..165355+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTTACCGCAGCGCAGATTCAAGCCTTCTTTGAAGAGGATGAGCA
AATGGCGATTCCTCATGCCACGGTCCTGCAATTGCGCAACGAGGGGATCA
ACTCTCCTACTGACCTCAACGACTTTAACAAGGACTCTATCAAGGAAGTT
GCTGAGAACCTGCGGAAGCCAACTGACCGGATTCCCAATCCGGATCCGAA
CGCAGCGCCAGGGTCGACCATTCCCAGGCCTGCATATGTCTTTGGTGCCA
AGTCCCAAAAGTGTCTGAACGAGGCATGTGACCTTGTGCGCTTTTACAAG
ACAATTGGTCGTGCACTCACCCCTGCCAACATCCGGTATGCGCCAATTAT
CAAGGATTTCACGCAGCAGTGGAAGGCACTCAAGGACAGGAAGTCGAATG
AAGACGCGGAAGTCCCCAAGATCAGCAAGGCCTTGCCTTTGCTTAAGTGG
ACGGAGGCATTCGATGATTTTTTGAGCCGAACATGTGGATCAAGGACGAT
CCCATATTCGTATGTGACGCGCGGGGAAGCTGCGGTACCAGCTGGGGTAC
CGCCGCTCGCAACTGACAAACCTCACTCGGCAGAGCATGGATCGGTGGAG
GGAGACCTGGTCAACAGGGCGTCCCACAATCACCCGCTCTTTTGTGCGGA
CAACGCCGAGGTGTACTATCTCTTGGAGGAGGCGTGCCGTGGCACTTCCT
ATGTGGCGTCGTTGAAGCCGTACCAGCGTGCCAAGAATGGAAGAGCAGCG
TATGAATCCTTGAAAAAGCAGTATGCCGGACGCGACAAGTGGGAAGCTGA
ACTGTCGAGGCAGGACAATCTCCTGCACACACGAATGTGGAAAGGACAGT
CGAATTTTTCGTTGGAGAAGTTCGTTGCGCAGCATCGGAACGCGTTCGTG
TCCATGCAACAGTGTGCGCAATATGTGGACTACCAGCTACCAAATGAGCA
CACTCGGGTTGGCTATCTTCTCAATGCCATTGAAACGTCTGATGCTGGAT
TGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAAAATATACTCAATTAATTTAATATTATACACACACCCTATATGTT
CACCCCTAATACATATACAGCTCATGACTCTATGATGTCTGACATATATA
CCCCGTTTTTGTTGCTGCTTGAAGCATGTTAAATTAACATTGCCAACAAC
TCTTCTACCAACTACACGAGTAGTCCTCAGTGAAGGAGAAATTGTTGCTT
CTTCAAAGTTAATTTCCGGGTTATATATACACATTCACAACTCACAAAAA
CTTAACACACAACAATCAAACTAACAATTAGCTCCGAACATATATATTAC
CAACTAGTAACCAGCGACCACAGTGACCTTGAGAGTTTACAGCAGTACTA
GAACCAGCAACAGTCAAAAGTAGATTACCAAGTAAAAGATGGTGCCTGAC
CTCCCAATCTACTAACAATTTTCTATTTCCTGTTCAGTTGGTGCGCCCCA
GAGACCAAACTTAGTTGTTACCAGTTCATTTCCGGGTTACTTAATACCTC
GGAAGACAACCTTGAACCAAAAACAAGCAAGTCTCTAGCTTGCACCACCA
CATATACATACACATAACAATCAAATCATCATGTCACAGATTTATTCAAC
AGCAGCAACTGGCAACCAGAGCCTGCATAATCGAATACAGACCTTAGGAC
AATCACACCAACTTGTTGTTAGACTTCCCAAGAGAAAGAAACACAACCAA
CCAGCATGGAACATCAGTTTAAAAGCAACCACAGCTTGATACTTCCAGGT
TACcaacaacaacgacaacaacagcaaTACCCCACATGCAGCAGGCAGTC
GATGATGCTGCACCCTCTGTTATTTCTGGCGGGAGCACAGGAGTGAATGA
CGACGATACCTGCAGTGGTGGAGATGATTGCAATGACAATGCCAGCAATG
CTGATGACCCAGGCCAAGACTAGGACGGTGATGCATCTAAAATCAAGTCA
CCAAAGATTttggtggagactgtagatgatgagaatgatgacgatgatat
accattacaatcaatgccaatgctacgtcccttttccatctgctgagaat
gacaaaagggccaatggtgatggtgatgatgatgatgatgatgCCGTCCC
CGACCACACGGTGAGAGAGTACAGAATCGGATGAGATTCAGGCAAAACTC
ACATTCTCATGACGATGCTTTTTGTTCTCTCTTGTCGATTCATACTCTTG
CTCCTCTGCAAGCTTGCACGAGTATGCCCACAAGAGTGATTTCCGTCTTT
TTTCTACACTTAACCGGCGCAGTTAGACGGCAAGCCAAGCACTGCTTTCT
CTGACCACATCGACGTTGAATAACTAATGCCACCAGCACCAGCAGTGCCA
GTGCTAGATGAGTGATGATCTAGATCTAGTAGTGGAAGCCCCGACAGCAA
GAACTCACGAGGAGACTACAATGGGAGACTCTACTGATGAAGAAGAGGAA
GAAGTCATCACGACTAATGAGGATAATACTGAAGAGTTGACTTCCGGTTC
TTATGCAACGCTGCCTAGTCTAGAGGAGCTATTTAAAGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_191:162713..165355+

>Gvermi2101.t1 ID=Gvermi2101.t1|Name=Gvermi2101.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1050bp|location=Sequence derived from alignment at ScGOVlb_191:162713..165355+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTTACCGCAGCGCAGATTCAAGCCTTCTTTGAAGAGGATGAGCA
AATGGCGATTCCTCATGCCACGGTCCTGCAATTGCGCAACGAGGGGATCA
ACTCTCCTACTGACCTCAACGACTTTAACAAGGACTCTATCAAGGAAGTT
GCTGAGAACCTGCGGAAGCCAACTGACCGGATTCCCAATCCGGATCCGAA
CGCAGCGCCAGGGTCGACCATTCCCAGGCCTGCATATGTCTTTGGTGCCA
AGTCCCAAAAGTGTCTGAACGAGGCATGTGACCTTGTGCGCTTTTACAAG
ACAATTGGTCGTGCACTCACCCCTGCCAACATCCGGTATGCGCCAATTAT
CAAGGATTTCACGCAGCAGTGGAAGGCACTCAAGGACAGGAAGTCGAATG
AAGACGCGGAAGTCCCCAAGATCAGCAAGGCCTTGCCTTTGCTTAAGTGG
ACGGAGGCATTCGATGATTTTTTGAGCCGAACATGTGGATCAAGGACGAT
CCCATATTCGTATGTGACGCGCGGGGAAGCTGCGGTACCAGCTGGGGTAC
CGCCGCTCGCAACTGACAAACCTCACTCGGCAGAGCATGGATCGGTGGAG
GGAGACCTGGTCAACAGGGCGTCCCACAATCACCCGCTCTTTTGTGCGGA
CAACGCCGAGGTGTACTATCTCTTGGAGGAGGCGTGCCGTGGCACTTCCT
ATGTGGCGTCGTTGAAGCCGTACCAGCGTGCCAAGAATGGAAGAGCAGCG
TATGAATCCTTGAAAAAGCAGTATGCCGGACGCGACAAGTGGGAAGCTGA
ACTGTCGAGGCAGGACAATCTCCTGCACACACGAATGTGGAAAGGACAGT
CGAATTTTTCGTTGGAGAATGATGATCTAGATCTAGTAGTGGAAGCCCCG
ACAGCAAGAACTCACGAGGAGACTACAATGGGAGACTCTACTGATGAAGA
AGAGGAAGAAGTCATCACGACTAATGAGGATAATACTGAAGAGTTGACTT
CCGGTTCTTATGCAACGCTGCCTAGTCTAGAGGAGCTATTTAAAGTGTAA
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