Gvermi2096.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2096.t1
Unique NameGvermi2096.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:149947..151158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010445161.1
PFAMsHTH_Tnp_Tc3_2
Max annot lvl2759|Eukaryota
Evalue4.64e-33
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2096Gvermi2096Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 149947..151158 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2096.t1.stop1Gvermi2096.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 149947..149949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2096.t1.CDS1Gvermi2096.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 149947..151158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2096.t1.exon1Gvermi2096.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 149947..151158 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2096.t1.start1Gvermi2096.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 151156..151158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2096.t1Gvermi2096.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 149947..151158 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2096.t1 ID=Gvermi2096.t1|Name=Gvermi2096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=404bp
MAEQADFPPAGPVPNKRKQPDLTHDERRDVVKRLLMEVIPGSLDSSLKRG
ALQKVARDIGQDRSTVSRVWARAKKNKTAEDSATAAFNASPMKAGTIELK
CVPVTKALYRDYMIKKVLPAIKSKWPCKDELARGIHIQQDGAKTHHGSDD
PEWRAAAHKRGFNVGLLTQPANSPDTNNCDLTFFRALQSSQWNHGYATDV
AGLIDQVKRAFAEFDPRKIEFGFLTHSCCLNEILEDFGGNNYTIPHMGKK
ALLKKGLLPKAIRVSTAAFRNIVFFETGQWHNNLQYKNGDWWSPDAPLDN
DTSSESSSESESDAAMLWADDAITDPFADAESDADCLDADGDDDYKLEAR
AVPFTASEEGLLLAAQAAVAESSSDDEVTAERRERERMFPIGFAENLAGS
DDE*
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spliced messenger RNA

>Gvermi2096.t1 ID=Gvermi2096.t1|Name=Gvermi2096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at ScGOVlb_191:149947..151158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAACAGGCTGATTTTCCACCTGCGGGTCCTGTCCCAAACAAAAG
GAAGCAACCCGACCTAACGCATGATGAAAGGAGAGATGTTGTCAAGCGTC
TCTTAATGGAGGTCATACCTGGGTCGCTTGACAGCAGTCTCAAAAGAGGT
GCCCTACAAAAAGTGGCGCGCGACATCGGCCAGGACAGATCAACGGTTTC
GCGGGTGTGGGCGCGCGCTAAGAAAAACAAAACGGCGGAGGATAGTGCTA
CAGCGGCTTTCAATGCATCGCCCATGAAAGCTGGCACTATTGAATTGAAG
TGTGTTCCAGTGACAAAAGCGTTGTACCGAGACTATATGATTAAAAAGGT
CCTACCAGCAATCAAAAGCAAGTGGCCTTGTAAGGACGAGCTTGCTCGCG
GAATCCATATCCAGCAAGACGGCGCCAAGACGCACCATGGCTCGGACGAT
CCAGAGTGGCGTGCAGCCGCACACAAGCGGGGATTCAACGTCGGCCTTCT
CACCCAGCCTGCCAATTCTCCAGATACCAACAACTGTGATCTGACCTTCT
TCCGTGCTCTCCAATCAAGCCAGTGGAACCATGGATATGCAACGGACGTC
GCTGGGCTCATTGACCAAGTGAAACGAGCATTTGCCGAATTTGACCCAAG
GAAAATTGAGTTTGGGTTCCTCACCCATAGCTGCTGCTTGAATGAAATCC
TGGAGGACTTTGGGGGCAACAACTACACGATCCCACACATGGGCAAGAAG
GCGTTGTTGAAGAAAGGCCTCCTTCCAAAGGCCATCAGGGTTAGCACGGC
AGCCTTCCGAAACATTGTGTTTTTCGAAACCGGACAGTGGCACAACAACC
TCCAGTACAAAAACGGAGACTGGTGGTCGCCCGATGCCCCGTTAGACAAC
GACACGTCGTCTGAATCCTCGTCTGAATCGGAATCAGACGCAGCCATGTT
GTGGGCAGACGACGCAATCACCGATCCCTTTGCCGATGCCGAATCGGACG
CCGACTGCCTGGATGCCGATGGGGACGACGATTACAAACTGGAAGCAAGG
GCTGTGCCTTTCACTGCAAGTGAAGAAGGTTTATTGTTAGCTGCACAAGC
TGCGGTGGCCGAGAGCTCCAGCGACGACGAGGTAACAGCGGAGAGGCGCG
AGAGAGAACGCATGTTTCCAATTGGGTTCGCTGAAAACTTGGCTGGTTCG
GATGATGAATGA
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protein sequence of Gvermi2096.t1

>Gvermi2096.t1 ID=Gvermi2096.t1|Name=Gvermi2096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=404bp
MAEQADFPPAGPVPNKRKQPDLTHDERRDVVKRLLMEVIPGSLDSSLKRG
ALQKVARDIGQDRSTVSRVWARAKKNKTAEDSATAAFNASPMKAGTIELK
CVPVTKALYRDYMIKKVLPAIKSKWPCKDELARGIHIQQDGAKTHHGSDD
PEWRAAAHKRGFNVGLLTQPANSPDTNNCDLTFFRALQSSQWNHGYATDV
AGLIDQVKRAFAEFDPRKIEFGFLTHSCCLNEILEDFGGNNYTIPHMGKK
ALLKKGLLPKAIRVSTAAFRNIVFFETGQWHNNLQYKNGDWWSPDAPLDN
DTSSESSSESESDAAMLWADDAITDPFADAESDADCLDADGDDDYKLEAR
AVPFTASEEGLLLAAQAAVAESSSDDEVTAERRERERMFPIGFAENLAGS
DDE*
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mRNA from alignment at ScGOVlb_191:149947..151158-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2096.t1 ID=Gvermi2096.t1|Name=Gvermi2096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at ScGOVlb_191:149947..151158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAACAGGCTGATTTTCCACCTGCGGGTCCTGTCCCAAACAAAAG
GAAGCAACCCGACCTAACGCATGATGAAAGGAGAGATGTTGTCAAGCGTC
TCTTAATGGAGGTCATACCTGGGTCGCTTGACAGCAGTCTCAAAAGAGGT
GCCCTACAAAAAGTGGCGCGCGACATCGGCCAGGACAGATCAACGGTTTC
GCGGGTGTGGGCGCGCGCTAAGAAAAACAAAACGGCGGAGGATAGTGCTA
CAGCGGCTTTCAATGCATCGCCCATGAAAGCTGGCACTATTGAATTGAAG
TGTGTTCCAGTGACAAAAGCGTTGTACCGAGACTATATGATTAAAAAGGT
CCTACCAGCAATCAAAAGCAAGTGGCCTTGTAAGGACGAGCTTGCTCGCG
GAATCCATATCCAGCAAGACGGCGCCAAGACGCACCATGGCTCGGACGAT
CCAGAGTGGCGTGCAGCCGCACACAAGCGGGGATTCAACGTCGGCCTTCT
CACCCAGCCTGCCAATTCTCCAGATACCAACAACTGTGATCTGACCTTCT
TCCGTGCTCTCCAATCAAGCCAGTGGAACCATGGATATGCAACGGACGTC
GCTGGGCTCATTGACCAAGTGAAACGAGCATTTGCCGAATTTGACCCAAG
GAAAATTGAGTTTGGGTTCCTCACCCATAGCTGCTGCTTGAATGAAATCC
TGGAGGACTTTGGGGGCAACAACTACACGATCCCACACATGGGCAAGAAG
GCGTTGTTGAAGAAAGGCCTCCTTCCAAAGGCCATCAGGGTTAGCACGGC
AGCCTTCCGAAACATTGTGTTTTTCGAAACCGGACAGTGGCACAACAACC
TCCAGTACAAAAACGGAGACTGGTGGTCGCCCGATGCCCCGTTAGACAAC
GACACGTCGTCTGAATCCTCGTCTGAATCGGAATCAGACGCAGCCATGTT
GTGGGCAGACGACGCAATCACCGATCCCTTTGCCGATGCCGAATCGGACG
CCGACTGCCTGGATGCCGATGGGGACGACGATTACAAACTGGAAGCAAGG
GCTGTGCCTTTCACTGCAAGTGAAGAAGGTTTATTGTTAGCTGCACAAGC
TGCGGTGGCCGAGAGCTCCAGCGACGACGAGGTAACAGCGGAGAGGCGCG
AGAGAGAACGCATGTTTCCAATTGGGTTCGCTGAAAACTTGGCTGGTTCG
GATGATGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_191:149947..151158-

>Gvermi2096.t1 ID=Gvermi2096.t1|Name=Gvermi2096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1212bp|location=Sequence derived from alignment at ScGOVlb_191:149947..151158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAACAGGCTGATTTTCCACCTGCGGGTCCTGTCCCAAACAAAAG
GAAGCAACCCGACCTAACGCATGATGAAAGGAGAGATGTTGTCAAGCGTC
TCTTAATGGAGGTCATACCTGGGTCGCTTGACAGCAGTCTCAAAAGAGGT
GCCCTACAAAAAGTGGCGCGCGACATCGGCCAGGACAGATCAACGGTTTC
GCGGGTGTGGGCGCGCGCTAAGAAAAACAAAACGGCGGAGGATAGTGCTA
CAGCGGCTTTCAATGCATCGCCCATGAAAGCTGGCACTATTGAATTGAAG
TGTGTTCCAGTGACAAAAGCGTTGTACCGAGACTATATGATTAAAAAGGT
CCTACCAGCAATCAAAAGCAAGTGGCCTTGTAAGGACGAGCTTGCTCGCG
GAATCCATATCCAGCAAGACGGCGCCAAGACGCACCATGGCTCGGACGAT
CCAGAGTGGCGTGCAGCCGCACACAAGCGGGGATTCAACGTCGGCCTTCT
CACCCAGCCTGCCAATTCTCCAGATACCAACAACTGTGATCTGACCTTCT
TCCGTGCTCTCCAATCAAGCCAGTGGAACCATGGATATGCAACGGACGTC
GCTGGGCTCATTGACCAAGTGAAACGAGCATTTGCCGAATTTGACCCAAG
GAAAATTGAGTTTGGGTTCCTCACCCATAGCTGCTGCTTGAATGAAATCC
TGGAGGACTTTGGGGGCAACAACTACACGATCCCACACATGGGCAAGAAG
GCGTTGTTGAAGAAAGGCCTCCTTCCAAAGGCCATCAGGGTTAGCACGGC
AGCCTTCCGAAACATTGTGTTTTTCGAAACCGGACAGTGGCACAACAACC
TCCAGTACAAAAACGGAGACTGGTGGTCGCCCGATGCCCCGTTAGACAAC
GACACGTCGTCTGAATCCTCGTCTGAATCGGAATCAGACGCAGCCATGTT
GTGGGCAGACGACGCAATCACCGATCCCTTTGCCGATGCCGAATCGGACG
CCGACTGCCTGGATGCCGATGGGGACGACGATTACAAACTGGAAGCAAGG
GCTGTGCCTTTCACTGCAAGTGAAGAAGGTTTATTGTTAGCTGCACAAGC
TGCGGTGGCCGAGAGCTCCAGCGACGACGAGGTAACAGCGGAGAGGCGCG
AGAGAGAACGCATGTTTCCAATTGGGTTCGCTGAAAACTTGGCTGGTTCG
GATGATGAATGA
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