|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi2090.t1 ID=Gvermi2090.t1|Name=Gvermi2090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=847bp MGSKSKNRSPRKPDGTNSKKVKPAQNLSQSTLKSWAEKAQNPAPVAENPS PASVNEHQEMPNKTRQKKYRKKKNEASSPSRGTRRVSTAPPSPVREADSS MEIDSDPDQEMFDWADQYTARLARAKEDEKQGGDPKTNRLLEFSPASSPA RSNSSLEMSVTDDEKKKPGSDDPTDQPPAALPTVAETPKVNNLTQVLPSK SEEADVSSDGHSEELSSDAPSVAADKQPRPRSTSPENDAASTQTMTYFST EEDDKSGLTEENILAFTEANNFPDEEPAVEMQATTESDANKDGDDEQPTS QEEEDAPTDPSQGVLRTSPEDDIEMVDEHGTASDAESEMVDDRPFAGQTY KRSAIPHYPNTGRDRRKYQTRVDLRISLSAHQNPTMELQTKLRQALGMIR EQDPKVLVYPYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSL GMIREQDPRVVGIPTAAPITVRTPLSERLPISRPAFLTCRFTFAMCTRWQ RAGQLIPRFTSDMISLGTSSSWILRLCWTLGTTGSTSALSRRPSLPLRWD GSFSHRSDDVAALTAAIYDAIEVPVAIRWRPIYTGGKLTKENRVEALHVE IDSRHRDHDKAMLKWLFDSDSSSEYPLWEVMRLVPEFDSLVDTRAMAKVE KLRNHQLNYGIHTKMMATDDIASLDAIINPNEDADLQYTLRELLMSIKTK EDPEEQLFCSVNNHWNKNGQVLFVYLPQNEYEAQSTLKNLYPYLMHFVKG SGDITRNLHKVFKPSAVDRARDVSWNGDVMQVEADLEAFSIDEFATKLHS KRLFQSESTAKQPEAASSQPNDAARVTKDDDVSTIGTHGDAASLLF* back to topspliced messenger RNA >Gvermi2090.t1 ID=Gvermi2090.t1|Name=Gvermi2090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2541bp|location=Sequence derived from alignment at ScGOVlb_191:121931..124598+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGATCGAAAAGTAAAAATCGCTCACCTCGTAAGCCTGACGGCACGAA TTCGAAGAAGGTGAAGCCTGCCCAAAACCTGTCCCAATCCACCCTAAAAA GTTGGGCCGAAAAAGCGCAAAATCCGGCCCCTGTAGCCGAAAATCCATCT CCGGCTTCCGTCAACGAACATCAGGAAATGCCGAACAAAACTagacagaa gaagtacaggaagaagaagaaCGAGGCTTCTTCTCCCTCTCGTGGCACCA GACGTGTCTCCACCGCCCCTCCATCACCAGTTCGGGAAGCCGACTCCAGC ATGGAAATTGACTCGGATCCTGACCAAGAGATGTTCGACTGGGCAGACCA GTATACGGCTCGTCTCGCCCGTGCCAAGGAAGATGAGAAACAAGGAGGCG ACCCCAAGACGAACCGTCTTTTGGAATTTTCCCCTGCGTCCTCTCCTGCC AGGTCAAATTCTTCCCTGGAAATGAGTGTCACCGATGACGAAAAGAAAAA ACCCGGCAGCGACGACCCTACCGACCAGCCCCCTGCAGCCCTTCCAACCG TTGCCGAAACTCCAAAAGTCAATAACTTGACCCAAGTCCTCCCTTCAAAA AGCGAGGAGGCCGACGTCTCCTCCGATGGTCACTCGGAAGAGCTTAGTAG CGACGCTCCCTCTGTGGCTGCCGACAAGCAGCCTCGCCCTCGCTCTACCT CTCCTGAGAACGATGCCGCAAGTACTCAGACCATGACGTACTTCAGCACA GAGGAGGACGATAAGAGCGGCCTCACCGAAGAGAATATCCTCGCTTTTAC CGAGGCTAACAACTTTCCGGATGAGGAGCCGGCTGTGGAAATGCAAGcga cgaccgagagcgacgccaacaaggacggcgacgacgaGCAGCCTACGTCA CAGGAGGAGGAAGATGCCCCTACGGACCCTTCCCAGGGGGTTTTGCGTAC TTCTCCTGAAGATGACATTGAAATGGTCGACGAGCACGGTACCGCTTCTG ATGCCGAATCCGAAATGGTGGACGATCGTCCTTTTGCTGGTCAGACGTAC AAACGCTCGGCGATTCCGCACTACCCGAACACAGGACGGGATCGCCGCAA GTACCAGACACGTGTCGACCTTCGCATTTCCCTCTCGGCACACCAGAACC CAACGATGGAACTACAGACCAAGCTCAGACAGGCTTTGGGGATGATCCGT GAGCAGGACCCCAAAGTATTGGTGTATCCCTACAGCTGNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGGTTCACTG GGGATGATCCGCGAGCAGGACCCCAGAGTCGTGGGTATCCCTACTGCTGC GCCAATTACGGTCCGAACCCCCCTCTCCGAAAGATTGCCGATATCACGGC CAGCATTTCTGACATGCAGATTTACTTTCGCAATGTGCACGCGATGGCAA AGGGCGGGACAACTCATCCCTCGGTTTACATCGGACATGATAAGCCTTGG GACAAGCTCAAGTTGGATACTAAGGCTATGCTGGACGCTCGGAACCACGG GATCTACAAGCGCCCTCTCCAGACGACCGAGTTTACCACTAAGATGGGAT GGCTCCTTTTCCCACCGATCCGACGACGTTGCCGCTCTTACCGCGGCTAT TTACGATGCGATTGAAGTTCCTGTTGCAATTCGTTGGCGCCCAATCTATA CCGGAGGCAAGCTCACCAAGGAAAATCGTGTTGAAGCTCTTCACGTCGAG ATTGACAGTCGACACCGAGATCACGACAAGGCGATGCTTAAGTGGTTGTT CGACAGCGACTCCTCCAGCGAGTATCCTCTTTGGGAAGTTATGCGTCTTG TCCCAGAATTCGATAGTCTGGTCGACACCCGAGCGATGGCCAAAGTCGAG AAGCTTCGCAACCATCAGCTGAATTATGGTATTCATACGAAGATGATGGC GACCGATGACATTGCCTCCTTGGACGCTATTATCAACCCGAACGAGGACG CCGACCTCCAGTATACCCTCCGTGAGCTCCTTATGTCGATCAAAACCAAG GAGGATCCGGAAGAGCAACTTTTCTGCTCGGTTAACAATCATTGGAACAA GAACGGCCAGGTCCTTTTCGTCTATCTTCCCCAGAACGAGTATGAGGCTC AATCGACGCTCAAGAACCTGTACCCTTACTTGATGCACTTCGTGAAAGGC AGTGGCGACATTACCCGTAACCTTCATAAGGTTTTCAAACCGTCGGCGGT CGATCGCGCGCGTGATGTGTCTTGGAATGGTGATGTGATGCAGGTTGAAG CCGATCTCGAAGCGTTCAGCATTGATGAGTTTGCGACGAAGCTTCATTCA AAGAGGCTTTTCCAGTCTGAATCGACGGCGAAGCAGCCAGAGGCAGCCTC CTCTCAGCCCAATGACGCTGCGCGAGTGACTAAGGACGACGACGTCTCGA CGATTGGTACTCATGGAGATGCTGCATCGTTGTTGTTCTGa back to topprotein sequence of Gvermi2090.t1 >Gvermi2090.t1 ID=Gvermi2090.t1|Name=Gvermi2090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=847bp
MGSKSKNRSPRKPDGTNSKKVKPAQNLSQSTLKSWAEKAQNPAPVAENPS PASVNEHQEMPNKTRQKKYRKKKNEASSPSRGTRRVSTAPPSPVREADSS MEIDSDPDQEMFDWADQYTARLARAKEDEKQGGDPKTNRLLEFSPASSPA RSNSSLEMSVTDDEKKKPGSDDPTDQPPAALPTVAETPKVNNLTQVLPSK SEEADVSSDGHSEELSSDAPSVAADKQPRPRSTSPENDAASTQTMTYFST EEDDKSGLTEENILAFTEANNFPDEEPAVEMQATTESDANKDGDDEQPTS QEEEDAPTDPSQGVLRTSPEDDIEMVDEHGTASDAESEMVDDRPFAGQTY KRSAIPHYPNTGRDRRKYQTRVDLRISLSAHQNPTMELQTKLRQALGMIR EQDPKVLVYPYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSL GMIREQDPRVVGIPTAAPITVRTPLSERLPISRPAFLTCRFTFAMCTRWQ RAGQLIPRFTSDMISLGTSSSWILRLCWTLGTTGSTSALSRRPSLPLRWD GSFSHRSDDVAALTAAIYDAIEVPVAIRWRPIYTGGKLTKENRVEALHVE IDSRHRDHDKAMLKWLFDSDSSSEYPLWEVMRLVPEFDSLVDTRAMAKVE KLRNHQLNYGIHTKMMATDDIASLDAIINPNEDADLQYTLRELLMSIKTK EDPEEQLFCSVNNHWNKNGQVLFVYLPQNEYEAQSTLKNLYPYLMHFVKG SGDITRNLHKVFKPSAVDRARDVSWNGDVMQVEADLEAFSIDEFATKLHS KRLFQSESTAKQPEAASSQPNDAARVTKDDDVSTIGTHGDAASLLF* back to topmRNA from alignment at ScGOVlb_191:121931..124598+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi2090.t1 ID=Gvermi2090.t1|Name=Gvermi2090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2668bp|location=Sequence derived from alignment at ScGOVlb_191:121931..124598+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGGATCGAAAAGTAAAAATCGCTCACCTCGTAAGCCTGACGGCACGAA
TTCGAAGAAGGTGAAGCCTGCCCAAAACCTGTCCCAATCCACCCTAAAAA
GTTGGGCCGAAAAAGCGCAAAATCCGGCCCCTGTAGCCGAAAATCCATCT
CCGGCTTCCGTCAACGAACATCAGGAAATGCCGAACAAAACTagacagaa
gaagtacaggaagaagaagaaCGAGGCTTCTTCTCCCTCTCGTGGCACCA
GACGTGTCTCCACCGCCCCTCCATCACCAGTTCGGGAAGCCGACTCCAGC
ATGGAAATTGACTCGGATCCTGACCAAGAGATGTTCGACTGGGCAGACCA
GTATACGGCTCGTCTCGCCCGTGCCAAGGAAGATGAGAAACAAGGAGGCG
ACCCCAAGACGAACCGTCTTTTGGAATTTTCCCCTGCGTCCTCTCCTGCC
AGGTCAAATTCTTCCCTGGAAATGAGTGTCACCGATGACGAAAAGAAAAA
ACCCGGCAGCGACGACCCTACCGACCAGCCCCCTGCAGCCCTTCCAACCG
TTGCCGAAACTCCAAAAGTCAATAACTTGACCCAAGTCCTCCCTTCAAAA
AGCGAGGAGGCCGACGTCTCCTCCGATGGTCACTCGGAAGAGCTTAGTAG
CGACGCTCCCTCTGTGGCTGCCGACAAGCAGCCTCGCCCTCGCTCTACCT
CTCCTGAGAACGATGCCGCAAGTACTCAGACCATGACGTACTTCAGCACA
GAGGAGGACGATAAGAGCGGCCTCACCGAAGAGAATATCCTCGCTTTTAC
CGAGGCTAACAACTTTCCGGATGAGGAGCCGGCTGTGGAAATGCAAGcga
cgaccgagagcgacgccaacaaggacggcgacgacgaGCAGCCTACGTCA
CAGGAGGAGGAAGATGCCCCTACGGACCCTTCCCAGGGGGTTTTGCGTAC
TTCTCCTGAAGATGACATTGAAATGGTCGACGAGCACGGTACCGCTTCTG
ATGCCGAATCCGAAATGGTGGACGATCGTCCTTTTGCTGGTCAGACGTAC
AAACGCTCGGCGATTCCGCACTACCCGAACACAGGACGGGATCGCCGCAA
GTACCAGACACGTGTCGACCTTCGCATTTCCCTCTCGGCACACCAGAACC
CAACGATGGAACTACAGACCAAGCTCAGACAGGCTTTGGGGATGATCCGT
GAGCAGGACCCCAAAGTATTGGTGTATCCCTACAGCTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGGTTCACTG
GGGATGATCCGCGAGCAGGACCCCAGAGTCGTGGGTATCCCTACTGCTGC
GCCAATTACGGTCCGAACCCCCCTCTCCGAAAGATTGCCGATATCACGGC
CAGCATTTCTGACATGCAGATTTACTTTCGCAATGTGCACGCGATGGCAA
AGGGCGGGACAACTCATCCCTCGGTTTACATCGGACATGATAAGCCTTGG
GACAAGCTCAAGTTGGATACTAAGGCTATGCTGGACGCTCGGAACCACGG
GATCTACAAGCGCCCTCTCCAGACGACCGAGTTTACCACTAAGATGGGAT
GGCTCCTTTTCCCACCGATCCGACGACGTTGCCGCTCTTACCGCGGCTAT
TTACGATGCGATTGAAGTTCCTGTTGCAATTCGTTGGCGCCCAATCTATA
CCGGAGGCAAGCTCACCAAGGAAAATCGTGTTGAAGCTCTTCACGTCGAG
ATTGACAGTCGACACCGAGATCACGACAAGGCGATGCTTAAGTGGTTGTT
CGACAGCGACTCCTCCAGCGAGTATCCTCTTTGGGAAGTTATGCGTCTTG
TCCCAGAATTCGATAGTCTGGTCGACACCCGAGCGATGGCCAAAGTCGAG
AAGCTTCGCAACCATCAGCTGAATTATGGTATTCATACGAAGATGATGGC
GACCGATGACATTGCCTCCTTGGACGCTATTATCAACCCGAACGAGGACG
CCGACCTCCAGTATACCCTCCGTGAGCTCCTTATGTCGATCAAAACCAAG
GAGGATCCGGAAGAGCAACTTTTCTGCTCGGTTAACAATCATTGGAACAA
GAACGGCCAGGTCCTTTTCGTCTATCTTCCCCAGAACGAGTATGAGGCTC
AATCGACGCTCAAGAACCTGTACCCTTACTTGATGCACTTCGTGAAAGGC
AGTGGCGACATTACCCGTAACCTTCATAAGGTTTTCAAACCGTCGGCGGT
CGATCGCGCGCGTGATGTGTCTTGGAATGGTGATGTGATGCAGGTTGAAG
CCGATCTCGAAGCGTTCAGCATTGATGAGTTTGCGACGAAGCTTCATTCA
AAGAGGCTTTTCCAGTCTGAATCGACGGCGAAGCAGCCAGAGGCAGCCTC
CTCTCAGCCCAATGACGCTGCGCGAGTGACTAAGGACGACGACGTCTCGA
CGATTGGTACTCATGGAGGTACCGGAGCTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCATTAACAATAGATGCT
GCATCGTTGTTGTTCTGa back to topCoding sequence (CDS) from alignment at ScGOVlb_191:121931..124598+ >Gvermi2090.t1 ID=Gvermi2090.t1|Name=Gvermi2090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2541bp|location=Sequence derived from alignment at ScGOVlb_191:121931..124598+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGGATCGAAAAGTAAAAATCGCTCACCTCGTAAGCCTGACGGCACGAA TTCGAAGAAGGTGAAGCCTGCCCAAAACCTGTCCCAATCCACCCTAAAAA GTTGGGCCGAAAAAGCGCAAAATCCGGCCCCTGTAGCCGAAAATCCATCT CCGGCTTCCGTCAACGAACATCAGGAAATGCCGAACAAAACTagacagaa gaagtacaggaagaagaagaaCGAGGCTTCTTCTCCCTCTCGTGGCACCA GACGTGTCTCCACCGCCCCTCCATCACCAGTTCGGGAAGCCGACTCCAGC ATGGAAATTGACTCGGATCCTGACCAAGAGATGTTCGACTGGGCAGACCA GTATACGGCTCGTCTCGCCCGTGCCAAGGAAGATGAGAAACAAGGAGGCG ACCCCAAGACGAACCGTCTTTTGGAATTTTCCCCTGCGTCCTCTCCTGCC AGGTCAAATTCTTCCCTGGAAATGAGTGTCACCGATGACGAAAAGAAAAA ACCCGGCAGCGACGACCCTACCGACCAGCCCCCTGCAGCCCTTCCAACCG TTGCCGAAACTCCAAAAGTCAATAACTTGACCCAAGTCCTCCCTTCAAAA AGCGAGGAGGCCGACGTCTCCTCCGATGGTCACTCGGAAGAGCTTAGTAG CGACGCTCCCTCTGTGGCTGCCGACAAGCAGCCTCGCCCTCGCTCTACCT CTCCTGAGAACGATGCCGCAAGTACTCAGACCATGACGTACTTCAGCACA GAGGAGGACGATAAGAGCGGCCTCACCGAAGAGAATATCCTCGCTTTTAC CGAGGCTAACAACTTTCCGGATGAGGAGCCGGCTGTGGAAATGCAAGcga cgaccgagagcgacgccaacaaggacggcgacgacgaGCAGCCTACGTCA CAGGAGGAGGAAGATGCCCCTACGGACCCTTCCCAGGGGGTTTTGCGTAC TTCTCCTGAAGATGACATTGAAATGGTCGACGAGCACGGTACCGCTTCTG ATGCCGAATCCGAAATGGTGGACGATCGTCCTTTTGCTGGTCAGACGTAC AAACGCTCGGCGATTCCGCACTACCCGAACACAGGACGGGATCGCCGCAA GTACCAGACACGTGTCGACCTTCGCATTTCCCTCTCGGCACACCAGAACC CAACGATGGAACTACAGACCAAGCTCAGACAGGCTTTGGGGATGATCCGT GAGCAGGACCCCAAAGTATTGGTGTATCCCTACAGCTGNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGGTTCACTG GGGATGATCCGCGAGCAGGACCCCAGAGTCGTGGGTATCCCTACTGCTGC GCCAATTACGGTCCGAACCCCCCTCTCCGAAAGATTGCCGATATCACGGC CAGCATTTCTGACATGCAGATTTACTTTCGCAATGTGCACGCGATGGCAA AGGGCGGGACAACTCATCCCTCGGTTTACATCGGACATGATAAGCCTTGG GACAAGCTCAAGTTGGATACTAAGGCTATGCTGGACGCTCGGAACCACGG GATCTACAAGCGCCCTCTCCAGACGACCGAGTTTACCACTAAGATGGGAT GGCTCCTTTTCCCACCGATCCGACGACGTTGCCGCTCTTACCGCGGCTAT TTACGATGCGATTGAAGTTCCTGTTGCAATTCGTTGGCGCCCAATCTATA CCGGAGGCAAGCTCACCAAGGAAAATCGTGTTGAAGCTCTTCACGTCGAG ATTGACAGTCGACACCGAGATCACGACAAGGCGATGCTTAAGTGGTTGTT CGACAGCGACTCCTCCAGCGAGTATCCTCTTTGGGAAGTTATGCGTCTTG TCCCAGAATTCGATAGTCTGGTCGACACCCGAGCGATGGCCAAAGTCGAG AAGCTTCGCAACCATCAGCTGAATTATGGTATTCATACGAAGATGATGGC GACCGATGACATTGCCTCCTTGGACGCTATTATCAACCCGAACGAGGACG CCGACCTCCAGTATACCCTCCGTGAGCTCCTTATGTCGATCAAAACCAAG GAGGATCCGGAAGAGCAACTTTTCTGCTCGGTTAACAATCATTGGAACAA GAACGGCCAGGTCCTTTTCGTCTATCTTCCCCAGAACGAGTATGAGGCTC AATCGACGCTCAAGAACCTGTACCCTTACTTGATGCACTTCGTGAAAGGC AGTGGCGACATTACCCGTAACCTTCATAAGGTTTTCAAACCGTCGGCGGT CGATCGCGCGCGTGATGTGTCTTGGAATGGTGATGTGATGCAGGTTGAAG CCGATCTCGAAGCGTTCAGCATTGATGAGTTTGCGACGAAGCTTCATTCA AAGAGGCTTTTCCAGTCTGAATCGACGGCGAAGCAGCCAGAGGCAGCCTC CTCTCAGCCCAATGACGCTGCGCGAGTGACTAAGGACGACGACGTCTCGA CGATTGGTACTCATGGAGATGCTGCATCGTTGTTGTTCTGa back to top
|