Gvermi2081.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2081.t1
Unique NameGvermi2081.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:87226..88707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5297.GMQ_16202T0
Max annot lvl5297.GMQ_16202T0|-
Evalue9.06e-21
EggNOG OGs28IUF@1|root,2QR5Z@2759|Eukaryota
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2081Gvermi2081Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 87226..88707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2081.t1Gvermi2081.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 87226..88707 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2081.t1.start1Gvermi2081.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 87226..87228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2081.t1.CDS1Gvermi2081.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 87226..87794 +
Gvermi2081.t1.CDS2Gvermi2081.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 88062..88131 +
Gvermi2081.t1.CDS3Gvermi2081.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 88339..88707 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2081.t1.exon1Gvermi2081.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 87226..87794 +
Gvermi2081.t1.exon2Gvermi2081.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 88062..88131 +
Gvermi2081.t1.exon3Gvermi2081.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 88339..88707 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2081.t1.intron1Gvermi2081.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 87795..88061 +
Gvermi2081.t1.intron2Gvermi2081.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 88132..88338 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2081.t1.stop1Gvermi2081.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 88705..88707 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2081.t1 ID=Gvermi2081.t1|Name=Gvermi2081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp
MSSDGDEDIETYGEFSMEIEEDNFHNYFVETFDILTGDDQLEVQAAALLA
ADSDSDDDSDCEWGGSTPGKSPNKARDFTRAYVLLVDNYFSGTASKYNEQ
DFETRFRMPREVFSKIVLAVEGKGSFQQKTNAVTHELGIRPLVRVTACLR
KLAYGDASDRDDENLEISQTVVNENVKEFTRIMKEEFAESNIVRAILDGK
LDLKTEPYNVNGTEIVDLLDCTIILHNMIVEHRRDGFAVGSYAERGQQEL
ADARDFPVGPDVPDPVSIFPQQPALAAAAQADDNGGNLQAQIAEHLAARI
AHLAESTRDEAESLSLKSDLVAHLWNRKLAQDGIN*
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spliced messenger RNA

>Gvermi2081.t1 ID=Gvermi2081.t1|Name=Gvermi2081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_191:87226..88707+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCGACGGTGATGAAGATATTGAAACGTATGGTGAATTTTCTAT
GGAAATTGAGGAGGACAACTTCCACAATTATTTTGTTGAAACTTTCGATA
TTTTGACCGGAGACGACCAGCTTGAGGTGCAAGCTGCCGCTCTCCTTGCA
GCCgactctgactctgacgacgacagtgactgtgaATGGGGAGGTTCTAC
CCCGGGGAAGTCTCCGAACAAAGCTCGAGACTTTACCAGGGCATACGTTT
TGCTCGTTGATAACTATTTTTCTGGCACGGCATCTAAATACAATGAGCAA
GACTTCGAAACTAGATTTCGAATGCCACGCGAAGTCTTCAGTAAGATTGT
TCTAGCAGTCGAAGGGAAGGGAAGTTTTCAGCAAAAAACCAACGCTGTGA
CGCATGAGTTGGGTATCCGTCCGCTCGTTCGTGTGACAGCTTGTTTGCGA
AAGCTGGCCTACGGAGATGCCAGTGACCGCGACGATGAAAACTTGGAGAT
TTCGCAGACGGTAGTCAATGAAAATGTGAAAGAGTTCACTCGCATTATGA
AGGAAGAGTTTGCTGAAAGCAACATTGTACGAGCAATTCTGGATGGCAAA
CTTGATTTAAAAACCGAGCCGTACAATGTCAATGGAACCGAAATTGTCGA
TCTGCTTGACTGTACAATTATCCTCCACAACATGATTGTTGAGCACCGCC
GCGATGGCTTTGCTGTTGGCTCGTACGCTGAACGAGGGCAGCAAGAATTG
GCGGACGCTAGAGATTTTCCTGTTGGGCCCGACGTCCCTGATCCAGTGTC
CATATTCCCGCAGCAGCCAGCTCTGGCAGCAGCCGCACAAGCTGATGACA
ATGGTGGCAATCTACAAGCGCAAATTGCCGAGCATCTTGCGGCACGAATT
GCGCATCTTGCAGAAAGCACCCGAGACGAGGCAGAAAGCCTATCGCTCAA
GAGCGACTTGGTGGCGCATCTCTGGAATCGCAAGCTTGCACAAGATGGAA
TAAACTAG
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protein sequence of Gvermi2081.t1

>Gvermi2081.t1 ID=Gvermi2081.t1|Name=Gvermi2081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MSSDGDEDIETYGEFSMEIEEDNFHNYFVETFDILTGDDQLEVQAAALLA
ADSDSDDDSDCEWGGSTPGKSPNKARDFTRAYVLLVDNYFSGTASKYNEQ
DFETRFRMPREVFSKIVLAVEGKGSFQQKTNAVTHELGIRPLVRVTACLR
KLAYGDASDRDDENLEISQTVVNENVKEFTRIMKEEFAESNIVRAILDGK
LDLKTEPYNVNGTEIVDLLDCTIILHNMIVEHRRDGFAVGSYAERGQQEL
ADARDFPVGPDVPDPVSIFPQQPALAAAAQADDNGGNLQAQIAEHLAARI
AHLAESTRDEAESLSLKSDLVAHLWNRKLAQDGIN*
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mRNA from alignment at ScGOVlb_191:87226..88707+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2081.t1 ID=Gvermi2081.t1|Name=Gvermi2081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at ScGOVlb_191:87226..88707+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCCGACGGTGATGAAGATATTGAAACGTATGGTGAATTTTCTAT
GGAAATTGAGGAGGACAACTTCCACAATTATTTTGTTGAAACTTTCGATA
TTTTGACCGGAGACGACCAGCTTGAGGTGCAAGCTGCCGCTCTCCTTGCA
GCCgactctgactctgacgacgacagtgactgtgaATGGGGAGGTTCTAC
CCCGGGGAAGTCTCCGAACAAAGCTCGAGACTTTACCAGGGCATACGTTT
TGCTCGTTGATAACTATTTTTCTGGCACGGCATCTAAATACAATGAGCAA
GACTTCGAAACTAGATTTCGAATGCCACGCGAAGTCTTCAGTAAGATTGT
TCTAGCAGTCGAAGGGAAGGGAAGTTTTCAGCAAAAAACCAACGCTGTGA
CGCATGAGTTGGGTATCCGTCCGCTCGTTCGTGTGACAGCTTGTTTGCGA
AAGCTGGCCTACGGAGATGCCAGTGACCGCGACGATGAAAACTTGGAGAT
TTCGCAGACGGTAGTCAATGAAAATGTGAAAGAGTTCACTCGCATTATGA
AGGAAGAGTTTGCTGAAAGGTATCTCCACCGGACGCCAAACCAGCACGAG
ATTGCTCGCATTCTAGAAATCAATGCAGGCagaggatttcctggtctgtt
tgcatcttgggactgcaagcatttctcatggaagaactgccccgtggccc
tagctggacaacacaaaggcaaaggccaagacaagacactggtccttgag
gctatctgcgatccagatctctacttctggcacgcctattttggagatgc
cgggtcgctgaatgatatcaatatcctggaCAAAAGCAACATTGTACGAG
CAATTCTGGATGGCAAACTTGATTTAAAAACCGAGCCGTACAATGTCAAT
GGAACCGTGCGTGATTGGCTCTATTTTcttgttgacggaatttacccacc
atggtccatctttgtcagcacgtggcaatctcccctcactcaagagcagc
gctacttcacgaagtgtcaagaagcagtgcgcaaagacattgagcgcgca
tttggtgtgttGGTCCAACAGTTTCAAATTCTACAACGCCCAATTCGTAT
GTGGGACTGGCAGGAAATTGTCGATCTGCTTGACTGTACAATTATCCTCC
ACAACATGATTGTTGAGCACCGCCGCGATGGCTTTGCTGTTGGCTCGTAC
GCTGAACGAGGGCAGCAAGAATTGGCGGACGCTAGAGATTTTCCTGTTGG
GCCCGACGTCCCTGATCCAGTGTCCATATTCCCGCAGCAGCCAGCTCTGG
CAGCAGCCGCACAAGCTGATGACAATGGTGGCAATCTACAAGCGCAAATT
GCCGAGCATCTTGCGGCACGAATTGCGCATCTTGCAGAAAGCACCCGAGA
CGAGGCAGAAAGCCTATCGCTCAAGAGCGACTTGGTGGCGCATCTCTGGA
ATCGCAAGCTTGCACAAGATGGAATAAACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_191:87226..88707+

>Gvermi2081.t1 ID=Gvermi2081.t1|Name=Gvermi2081.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1008bp|location=Sequence derived from alignment at ScGOVlb_191:87226..88707+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCCGACGGTGATGAAGATATTGAAACGTATGGTGAATTTTCTAT
GGAAATTGAGGAGGACAACTTCCACAATTATTTTGTTGAAACTTTCGATA
TTTTGACCGGAGACGACCAGCTTGAGGTGCAAGCTGCCGCTCTCCTTGCA
GCCgactctgactctgacgacgacagtgactgtgaATGGGGAGGTTCTAC
CCCGGGGAAGTCTCCGAACAAAGCTCGAGACTTTACCAGGGCATACGTTT
TGCTCGTTGATAACTATTTTTCTGGCACGGCATCTAAATACAATGAGCAA
GACTTCGAAACTAGATTTCGAATGCCACGCGAAGTCTTCAGTAAGATTGT
TCTAGCAGTCGAAGGGAAGGGAAGTTTTCAGCAAAAAACCAACGCTGTGA
CGCATGAGTTGGGTATCCGTCCGCTCGTTCGTGTGACAGCTTGTTTGCGA
AAGCTGGCCTACGGAGATGCCAGTGACCGCGACGATGAAAACTTGGAGAT
TTCGCAGACGGTAGTCAATGAAAATGTGAAAGAGTTCACTCGCATTATGA
AGGAAGAGTTTGCTGAAAGCAACATTGTACGAGCAATTCTGGATGGCAAA
CTTGATTTAAAAACCGAGCCGTACAATGTCAATGGAACCGAAATTGTCGA
TCTGCTTGACTGTACAATTATCCTCCACAACATGATTGTTGAGCACCGCC
GCGATGGCTTTGCTGTTGGCTCGTACGCTGAACGAGGGCAGCAAGAATTG
GCGGACGCTAGAGATTTTCCTGTTGGGCCCGACGTCCCTGATCCAGTGTC
CATATTCCCGCAGCAGCCAGCTCTGGCAGCAGCCGCACAAGCTGATGACA
ATGGTGGCAATCTACAAGCGCAAATTGCCGAGCATCTTGCGGCACGAATT
GCGCATCTTGCAGAAAGCACCCGAGACGAGGCAGAAAGCCTATCGCTCAA
GAGCGACTTGGTGGCGCATCTCTGGAATCGCAAGCTTGCACAAGATGGAA
TAAACTAG
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