Gvermi2079.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2079.t1
Unique NameGvermi2079.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:70976..71776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2079Gvermi2079Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 70976..71776 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2079.t1.start1Gvermi2079.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 70976..70978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2079.t1.CDS1Gvermi2079.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 70976..71776 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2079.t1.exon1Gvermi2079.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 70976..71776 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2079.t1.stop1Gvermi2079.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 71774..71776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2079.t1Gvermi2079.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 70976..71776 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2079.t1 ID=Gvermi2079.t1|Name=Gvermi2079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=267bp
MSGAKATGESQTEPGGLLDSFVQLASFDLVGAIGLVGXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXDNTYDLVSEMTRYEEDNDESRPPSIITLH
ATATEQEPQEQQLILHGRVEHDDTTTLQEQAVMMPVAAGAADVGKTLRKL
YPEIRNYAILAAAVKKSRADFEQGLLLTSQEQDLLSERLLFCIATNNNEQ
DAAAFKVFADQQLETYTQQRADSIVQQVAIEQHMMNLWQQIPTTTTAAAA
AAAAASVFYCYSNNSY*
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spliced messenger RNA

>Gvermi2079.t1 ID=Gvermi2079.t1|Name=Gvermi2079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=801bp|location=Sequence derived from alignment at ScGOVlb_191:70976..71776+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGCGCCAAGGCGACTGGTGAGTCTCAAACTGAGCCGGGCGGATT
GCTCGATTCGTTTGTTCAGTTGGCTTCGTTCGATCTGGTGGGAGCGATCG
GCCTGGTTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGATAACACATATGACCTTGTCAGTGAGATGACAAGGT
ATGAAGAAGACAATGATGAATCTCGTCCTCCAAGCATCATTACTCTTCAC
GCGACTGCTACGGAACAAGAACCACAAGAACAACAGCTCATTCTACACGG
CCGCGTGGAACATGATGATACGACGACTCTCCAAGAACAAGCGGTGATGA
TGCCAGTAGCCGCTGGAGCAGCTGATGTGGGAAAGACGCTAAGAAAACTC
TATCCCGAGATTAGAAACTATGCTATTCTTGCCGCAGCCGTAAAGAAGTC
GAGGGCCGATTTCGAACAAGGGCTGTTGCTGACTTCCCAAGAGCAGGACC
TGCTGTCGGAGCGCCTTTTGTTCTGCATTGCCACCAACAACAACGAGCAG
GACGCCGCGGCTTTCAAAGTCTTTGCAGACCAGCAGCTCGAAACGTATAC
CCAACAACGAGCCGACAGTATCGTCCAGCAGGTGGCCATTGAACAGCACA
TGATGAATCTCTGGCAGCAAATCCCAACGACGACAACAgctgctgctgct
gctgctgctgctgctTCAGTTTTCTATTGCTACAGCAACAACAGCTACTA
A
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protein sequence of Gvermi2079.t1

>Gvermi2079.t1 ID=Gvermi2079.t1|Name=Gvermi2079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=267bp
MSGAKATGESQTEPGGLLDSFVQLASFDLVGAIGLVGXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXDNTYDLVSEMTRYEEDNDESRPPSIITLH
ATATEQEPQEQQLILHGRVEHDDTTTLQEQAVMMPVAAGAADVGKTLRKL
YPEIRNYAILAAAVKKSRADFEQGLLLTSQEQDLLSERLLFCIATNNNEQ
DAAAFKVFADQQLETYTQQRADSIVQQVAIEQHMMNLWQQIPTTTTAAAA
AAAAASVFYCYSNNSY*
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mRNA from alignment at ScGOVlb_191:70976..71776+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2079.t1 ID=Gvermi2079.t1|Name=Gvermi2079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=801bp|location=Sequence derived from alignment at ScGOVlb_191:70976..71776+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGGCGCCAAGGCGACTGGTGAGTCTCAAACTGAGCCGGGCGGATT
GCTCGATTCGTTTGTTCAGTTGGCTTCGTTCGATCTGGTGGGAGCGATCG
GCCTGGTTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGATAACACATATGACCTTGTCAGTGAGATGACAAGGT
ATGAAGAAGACAATGATGAATCTCGTCCTCCAAGCATCATTACTCTTCAC
GCGACTGCTACGGAACAAGAACCACAAGAACAACAGCTCATTCTACACGG
CCGCGTGGAACATGATGATACGACGACTCTCCAAGAACAAGCGGTGATGA
TGCCAGTAGCCGCTGGAGCAGCTGATGTGGGAAAGACGCTAAGAAAACTC
TATCCCGAGATTAGAAACTATGCTATTCTTGCCGCAGCCGTAAAGAAGTC
GAGGGCCGATTTCGAACAAGGGCTGTTGCTGACTTCCCAAGAGCAGGACC
TGCTGTCGGAGCGCCTTTTGTTCTGCATTGCCACCAACAACAACGAGCAG
GACGCCGCGGCTTTCAAAGTCTTTGCAGACCAGCAGCTCGAAACGTATAC
CCAACAACGAGCCGACAGTATCGTCCAGCAGGTGGCCATTGAACAGCACA
TGATGAATCTCTGGCAGCAAATCCCAACGACGACAACAgctgctgctgct
gctgctgctgctgctTCAGTTTTCTATTGCTACAGCAACAACAGCTACTA
A
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Coding sequence (CDS) from alignment at ScGOVlb_191:70976..71776+

>Gvermi2079.t1 ID=Gvermi2079.t1|Name=Gvermi2079.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=801bp|location=Sequence derived from alignment at ScGOVlb_191:70976..71776+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGGCGCCAAGGCGACTGGTGAGTCTCAAACTGAGCCGGGCGGATT
GCTCGATTCGTTTGTTCAGTTGGCTTCGTTCGATCTGGTGGGAGCGATCG
GCCTGGTTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGATAACACATATGACCTTGTCAGTGAGATGACAAGGT
ATGAAGAAGACAATGATGAATCTCGTCCTCCAAGCATCATTACTCTTCAC
GCGACTGCTACGGAACAAGAACCACAAGAACAACAGCTCATTCTACACGG
CCGCGTGGAACATGATGATACGACGACTCTCCAAGAACAAGCGGTGATGA
TGCCAGTAGCCGCTGGAGCAGCTGATGTGGGAAAGACGCTAAGAAAACTC
TATCCCGAGATTAGAAACTATGCTATTCTTGCCGCAGCCGTAAAGAAGTC
GAGGGCCGATTTCGAACAAGGGCTGTTGCTGACTTCCCAAGAGCAGGACC
TGCTGTCGGAGCGCCTTTTGTTCTGCATTGCCACCAACAACAACGAGCAG
GACGCCGCGGCTTTCAAAGTCTTTGCAGACCAGCAGCTCGAAACGTATAC
CCAACAACGAGCCGACAGTATCGTCCAGCAGGTGGCCATTGAACAGCACA
TGATGAATCTCTGGCAGCAAATCCCAACGACGACAACAgctgctgctgct
gctgctgctgctgctTCAGTTTTCTATTGCTACAGCAACAACAGCTACTA
A
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