Gvermi2077.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2077.t2
Unique NameGvermi2077.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:64680..65615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2077Gvermi2077Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 64680..67265 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2077.t2.stop1Gvermi2077.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 64680..64682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2077.t2.CDS1Gvermi2077.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 64680..65615 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2077.t2.exon1Gvermi2077.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 64680..65615 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2077.t2.start1Gvermi2077.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 65613..65615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2077.t2Gvermi2077.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 64680..65615 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2077.t2 ID=Gvermi2077.t2|Name=Gvermi2077.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=312bp
LIESVSQITGQVEANEEKILRQLIDLISKGSHWSQFVDKIWRRNQALTAE
VEFINMVGRFQEEGKTLLRFRNTKTTLEHLVTIFDSKHLPPVCECSIYKS
ERIPCEGICSAFPEHVEHRETKCLFSPENIPYRWRLESHPLYPKALRCLG
INPEATEDETLASSSQQDENVVQTFFGVSLKEFSSVQVPRGPSARYAKLH
NLLKQEFLPKVTSNDRVFKWASLQICKLVNQAELMQARNVDSLEGVDCVD
DPNVPSVLPPLTRVSGRILNDELTNGANRAAATKSGKRKRMKVNPPPTCP
DTNAPLQIAKI*
back to top

spliced messenger RNA

>Gvermi2077.t2 ID=Gvermi2077.t2|Name=Gvermi2077.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_191:64680..65615- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATTGAAAGTGTCTCTCAAATCACGGGACAAGTCGAGGCCAATGAGGA
GAAAATTCTACGGCAACTCATTGACTTGATTAGCAAAGGGTCCCACTGGA
GTCAATTCGTTGACAAGATCTGGCGACGCAACCAGGCTCTCACAGCGGAA
GTGGAGTTCATTAACATGGTTGGTCGTTTCCAGGAAGAAGGCAAGACTTT
GTTGCGCTTCCGTAACACAAAAACTACCTTGGAGCACTTGGTTACAATAT
TTGATAGCAAACACTTACCTCCAGTCTGTGAATGCTCCATTTACAAGTCG
GAAAGAATCCCGTGCGAAGGAATCTGTTCAGCATTTCCTGAACACGTAGA
GCACCGAGAAACCAAGTGTCTTTTCTCTCCAGAGAATATACCATACAGGT
GGAGACTTGAGTCGCATCCCCTCTACCCAAAAGCCCTTCGTTGCTTGGGG
ATCAATCCGGAAGCAACGGAGGACGAGACATTGGCCTCCTCCAGCCAACA
AGACGAGAATGTGGTCCAAACCTTCTTTGGAGTCTCGCTCAAAGAGTTCT
CCAGTGTGCAGGTTCCAAGAGGTCCAAGCGCAAGGTATGCAAAGCTTCAC
AACCTTCTGAAGCAGGAGTTCTTGCCAAAAGTAACCAGCAATGACCGTGT
GTTCAAGTGGGCCAGCCTCCAAATTTGCAAGCTTGTCAATCAAGCGGAGC
TAATGCAAGCCCGGAACGTGGATTCTCTTGAAGGCGTTGATTGTGTTGAT
GATCCAAATGTACCAAGTGTTCTTCCACCATTGACCAGGGTTTCTGGGCG
CATCCTCAATGATGAATTAACTAATGGAGCCAACAGAGCAGCCGCAACAA
AGAGCGGCAAAAGGAAAAGGATGAAGGTAAATCCACCTCCAACTTGCCCA
GATACCAATGCGCCACTTCAGATCGCCAAGATTTGA
back to top

protein sequence of Gvermi2077.t2

>Gvermi2077.t2 ID=Gvermi2077.t2|Name=Gvermi2077.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=312bp
LIESVSQITGQVEANEEKILRQLIDLISKGSHWSQFVDKIWRRNQALTAE
VEFINMVGRFQEEGKTLLRFRNTKTTLEHLVTIFDSKHLPPVCECSIYKS
ERIPCEGICSAFPEHVEHRETKCLFSPENIPYRWRLESHPLYPKALRCLG
INPEATEDETLASSSQQDENVVQTFFGVSLKEFSSVQVPRGPSARYAKLH
NLLKQEFLPKVTSNDRVFKWASLQICKLVNQAELMQARNVDSLEGVDCVD
DPNVPSVLPPLTRVSGRILNDELTNGANRAAATKSGKRKRMKVNPPPTCP
DTNAPLQIAKI*
back to top

mRNA from alignment at ScGOVlb_191:64680..65615-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2077.t2 ID=Gvermi2077.t2|Name=Gvermi2077.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_191:64680..65615- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGATTGAAAGTGTCTCTCAAATCACGGGACAAGTCGAGGCCAATGAGGA
GAAAATTCTACGGCAACTCATTGACTTGATTAGCAAAGGGTCCCACTGGA
GTCAATTCGTTGACAAGATCTGGCGACGCAACCAGGCTCTCACAGCGGAA
GTGGAGTTCATTAACATGGTTGGTCGTTTCCAGGAAGAAGGCAAGACTTT
GTTGCGCTTCCGTAACACAAAAACTACCTTGGAGCACTTGGTTACAATAT
TTGATAGCAAACACTTACCTCCAGTCTGTGAATGCTCCATTTACAAGTCG
GAAAGAATCCCGTGCGAAGGAATCTGTTCAGCATTTCCTGAACACGTAGA
GCACCGAGAAACCAAGTGTCTTTTCTCTCCAGAGAATATACCATACAGGT
GGAGACTTGAGTCGCATCCCCTCTACCCAAAAGCCCTTCGTTGCTTGGGG
ATCAATCCGGAAGCAACGGAGGACGAGACATTGGCCTCCTCCAGCCAACA
AGACGAGAATGTGGTCCAAACCTTCTTTGGAGTCTCGCTCAAAGAGTTCT
CCAGTGTGCAGGTTCCAAGAGGTCCAAGCGCAAGGTATGCAAAGCTTCAC
AACCTTCTGAAGCAGGAGTTCTTGCCAAAAGTAACCAGCAATGACCGTGT
GTTCAAGTGGGCCAGCCTCCAAATTTGCAAGCTTGTCAATCAAGCGGAGC
TAATGCAAGCCCGGAACGTGGATTCTCTTGAAGGCGTTGATTGTGTTGAT
GATCCAAATGTACCAAGTGTTCTTCCACCATTGACCAGGGTTTCTGGGCG
CATCCTCAATGATGAATTAACTAATGGAGCCAACAGAGCAGCCGCAACAA
AGAGCGGCAAAAGGAAAAGGATGAAGGTAAATCCACCTCCAACTTGCCCA
GATACCAATGCGCCACTTCAGATCGCCAAGATTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_191:64680..65615-

>Gvermi2077.t2 ID=Gvermi2077.t2|Name=Gvermi2077.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=936bp|location=Sequence derived from alignment at ScGOVlb_191:64680..65615- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGATTGAAAGTGTCTCTCAAATCACGGGACAAGTCGAGGCCAATGAGGA
GAAAATTCTACGGCAACTCATTGACTTGATTAGCAAAGGGTCCCACTGGA
GTCAATTCGTTGACAAGATCTGGCGACGCAACCAGGCTCTCACAGCGGAA
GTGGAGTTCATTAACATGGTTGGTCGTTTCCAGGAAGAAGGCAAGACTTT
GTTGCGCTTCCGTAACACAAAAACTACCTTGGAGCACTTGGTTACAATAT
TTGATAGCAAACACTTACCTCCAGTCTGTGAATGCTCCATTTACAAGTCG
GAAAGAATCCCGTGCGAAGGAATCTGTTCAGCATTTCCTGAACACGTAGA
GCACCGAGAAACCAAGTGTCTTTTCTCTCCAGAGAATATACCATACAGGT
GGAGACTTGAGTCGCATCCCCTCTACCCAAAAGCCCTTCGTTGCTTGGGG
ATCAATCCGGAAGCAACGGAGGACGAGACATTGGCCTCCTCCAGCCAACA
AGACGAGAATGTGGTCCAAACCTTCTTTGGAGTCTCGCTCAAAGAGTTCT
CCAGTGTGCAGGTTCCAAGAGGTCCAAGCGCAAGGTATGCAAAGCTTCAC
AACCTTCTGAAGCAGGAGTTCTTGCCAAAAGTAACCAGCAATGACCGTGT
GTTCAAGTGGGCCAGCCTCCAAATTTGCAAGCTTGTCAATCAAGCGGAGC
TAATGCAAGCCCGGAACGTGGATTCTCTTGAAGGCGTTGATTGTGTTGAT
GATCCAAATGTACCAAGTGTTCTTCCACCATTGACCAGGGTTTCTGGGCG
CATCCTCAATGATGAATTAACTAATGGAGCCAACAGAGCAGCCGCAACAA
AGAGCGGCAAAAGGAAAAGGATGAAGGTAAATCCACCTCCAACTTGCCCA
GATACCAATGCGCCACTTCAGATCGCCAAGATTTGA
back to top