Gvermi2066.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2066.t1
Unique NameGvermi2066.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:27818..29382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2066Gvermi2066Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 27818..29382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2066.t1Gvermi2066.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 27818..29382 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2066.t1.start1Gvermi2066.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 27818..27820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2066.t1.CDS1Gvermi2066.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 27818..28039 +
Gvermi2066.t1.CDS2Gvermi2066.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 28132..29382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2066.t1.exon1Gvermi2066.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 27818..28039 +
Gvermi2066.t1.exon2Gvermi2066.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 28132..29382 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2066.t1.intron1Gvermi2066.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 28040..28131 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2066.t1.stop1Gvermi2066.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 29380..29382 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2066.t1 ID=Gvermi2066.t1|Name=Gvermi2066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=491bp
MLKRTKSEKNEILDEVDKLRNEIRHLKSDNARSLRTTDMTLFQSHCKDAL
RNTKSAGSNICKSIVYGCGFLSAKHISDKDYTTLVKEHSLDYDNPSVEFF
FSSVLNKCPSDLRPKCQAKDFRQYIWKNTNIAATFINKINQCRNNLKATF
VNDLLHPYLDHYVFNHTNDNEDYERNMRPHNSTIAKRRGTEKTKKMWSQS
PSVILGSPNLYEKFASSIFFAATYGRYDRDTNPKSSWHVVVALSALHRDG
EFCSKFATKGDIYISETAMSNLNNQNFNSKLTVTEESLYRLFVMKEIYNG
IFDGKFQQLLCAYHHYTEDMMANPLPNTDQDSDDETAFLPTVYKNLTYDE
LSEYKTTNNIHLPGLGFKNGNTNSRVSEEPCSKPCVEYSQSTIDIYEQLK
EIIIKERQEDSNHNKQQLIDLKSILPPSSQQCTDDSNKRTRDTNDDDADA
EADRLEQQKQRKAAAHSRFCLASLHHPGINSADITNFTEM*
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spliced messenger RNA

>Gvermi2066.t1 ID=Gvermi2066.t1|Name=Gvermi2066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_191:27818..29382+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAAACGTACGAAGAGTGAAAAGAACGAAATCCTTGACGAAGTTGA
CAAACTCCGCAACGAAATCCGTCATCTCAAGAGTGATAATGCACGCTCCC
TGAGAACCACCGATATGACCCTATTCCAAAGTCACTGCAAAGACGCACTT
CGAAACACCAAGAGCGCCGGTTCCAACATTTGCAAGAGCATTGTATACGG
TTGTGGTTTTCTTTCTGCAAAGCACATATCCGACAAAGATTACACCACTC
TGGTCAAGGAACACTCCCTTGATTATGATAACCCTTCCGTTGAATTCTTC
TTCTCCTCCGTTCTTAACAAATGCCCTTCAGATCTTCGCCCAAAGTGCCA
AGCAAAAGATTTTCGCCAGTACATATGGAAGAACACAAACATTGCTGCTA
CCTTCATCAACAAAATCAACCAATGCAGAAACAATCTGAAGGCCACCTTT
GTAAATGATCTCCTCCATCCCTACCTTGATCACTATGTTTTCAATCACAC
CAATGATAACGAAGATTACGAGCGCAACATGCGTCCCCATAACAGCACCA
TTGCCAAACGAAGGGGAACAGAGAAGACCAAAAAAATGTGGTCTCAGTCT
CCAAGCGTCATCTTGGGAAGTCCCAACCTCTACGAAAAGTTTGCCAGCTC
TATATTCTTTGCAGCTACATACGGGCGCTATGACCGAGACACCAACCCAA
AATCAAGCTGGCATGTCGTTGTTGCTCTTTCTGCTTTACACCGTGATGGC
GAATTTTGCTCCAAGTTTGCAACCAAAGGAGATATCTACATAAGCGAAAC
CGCTATGTCCAACCTCAACAACCAGAATTTCAACTCGAAGCTTACTGTTA
CGGAAGAGTCTCTCTACCGTCTTTTTGTCATGAAGGAAATTTACAATGGA
ATTTTCGACGGCAAGTTCCAGCAGCTCCTATGCGCTTATCATCATTACAC
CGAAGACATGATGGCCAACCCCCTACCGAATACTGATCAAGATTCAGACG
ATGAGACGGCGTTCCTTCCCACCGTTTATAAAAACTTGACGTACGACGAG
CTTTCTGAGTACAAAACTACTAACAACATCCACCTACCCGGCCTCGGATT
CAAGAATGGTAATACAAATTCACGCGTTTCAGAAGAGCCGTGCTCTAAAC
CCTGTGTTGAATACTCCCAGTCGACGATAGATATTTACGAGCAGTTGAAG
GAGATTATCATCAAAGAACGCCAAGAAGATAGCAATCACAACAAACAGCA
GCTCATCGATCTCAAGTCGATTCTTCCTCCATCATCACAACAATGCACCG
ACGATTCTAACAAACGCACTCGTGATACCAACGATGATGACGCGGATGCC
GAAGCTGACCGATTAGAACAGCAAAAGCAGAGGAAGGCCGCTGCCCACAG
TCGCTTTTGCTTAGCTTCCCTACATCATCCTGGTATCAATTCTGCGGACA
TTACCAACTTTACGGAAATGTAA
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protein sequence of Gvermi2066.t1

>Gvermi2066.t1 ID=Gvermi2066.t1|Name=Gvermi2066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=491bp
MLKRTKSEKNEILDEVDKLRNEIRHLKSDNARSLRTTDMTLFQSHCKDAL
RNTKSAGSNICKSIVYGCGFLSAKHISDKDYTTLVKEHSLDYDNPSVEFF
FSSVLNKCPSDLRPKCQAKDFRQYIWKNTNIAATFINKINQCRNNLKATF
VNDLLHPYLDHYVFNHTNDNEDYERNMRPHNSTIAKRRGTEKTKKMWSQS
PSVILGSPNLYEKFASSIFFAATYGRYDRDTNPKSSWHVVVALSALHRDG
EFCSKFATKGDIYISETAMSNLNNQNFNSKLTVTEESLYRLFVMKEIYNG
IFDGKFQQLLCAYHHYTEDMMANPLPNTDQDSDDETAFLPTVYKNLTYDE
LSEYKTTNNIHLPGLGFKNGNTNSRVSEEPCSKPCVEYSQSTIDIYEQLK
EIIIKERQEDSNHNKQQLIDLKSILPPSSQQCTDDSNKRTRDTNDDDADA
EADRLEQQKQRKAAAHSRFCLASLHHPGINSADITNFTEM*
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mRNA from alignment at ScGOVlb_191:27818..29382+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2066.t1 ID=Gvermi2066.t1|Name=Gvermi2066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1565bp|location=Sequence derived from alignment at ScGOVlb_191:27818..29382+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAAACGTACGAAGAGTGAAAAGAACGAAATCCTTGACGAAGTTGA
CAAACTCCGCAACGAAATCCGTCATCTCAAGAGTGATAATGCACGCTCCC
TGAGAACCACCGATATGACCCTATTCCAAAGTCACTGCAAAGACGCACTT
CGAAACACCAAGAGCGCCGGTTCCAACATTTGCAAGAGCATTGTATACGG
TTGTGGTTTTCTTTCTGCAAAGGTATCACCAAAATCATTTGCCACCCCCC
TTTTTTGTTTCCACCTTTACCGCTTCTATTATCTCACCCACCTCTCCTTA
TTACCCTAACACAGCACATATCCGACAAAGATTACACCACTCTGGTCAAG
GAACACTCCCTTGATTATGATAACCCTTCCGTTGAATTCTTCTTCTCCTC
CGTTCTTAACAAATGCCCTTCAGATCTTCGCCCAAAGTGCCAAGCAAAAG
ATTTTCGCCAGTACATATGGAAGAACACAAACATTGCTGCTACCTTCATC
AACAAAATCAACCAATGCAGAAACAATCTGAAGGCCACCTTTGTAAATGA
TCTCCTCCATCCCTACCTTGATCACTATGTTTTCAATCACACCAATGATA
ACGAAGATTACGAGCGCAACATGCGTCCCCATAACAGCACCATTGCCAAA
CGAAGGGGAACAGAGAAGACCAAAAAAATGTGGTCTCAGTCTCCAAGCGT
CATCTTGGGAAGTCCCAACCTCTACGAAAAGTTTGCCAGCTCTATATTCT
TTGCAGCTACATACGGGCGCTATGACCGAGACACCAACCCAAAATCAAGC
TGGCATGTCGTTGTTGCTCTTTCTGCTTTACACCGTGATGGCGAATTTTG
CTCCAAGTTTGCAACCAAAGGAGATATCTACATAAGCGAAACCGCTATGT
CCAACCTCAACAACCAGAATTTCAACTCGAAGCTTACTGTTACGGAAGAG
TCTCTCTACCGTCTTTTTGTCATGAAGGAAATTTACAATGGAATTTTCGA
CGGCAAGTTCCAGCAGCTCCTATGCGCTTATCATCATTACACCGAAGACA
TGATGGCCAACCCCCTACCGAATACTGATCAAGATTCAGACGATGAGACG
GCGTTCCTTCCCACCGTTTATAAAAACTTGACGTACGACGAGCTTTCTGA
GTACAAAACTACTAACAACATCCACCTACCCGGCCTCGGATTCAAGAATG
GTAATACAAATTCACGCGTTTCAGAAGAGCCGTGCTCTAAACCCTGTGTT
GAATACTCCCAGTCGACGATAGATATTTACGAGCAGTTGAAGGAGATTAT
CATCAAAGAACGCCAAGAAGATAGCAATCACAACAAACAGCAGCTCATCG
ATCTCAAGTCGATTCTTCCTCCATCATCACAACAATGCACCGACGATTCT
AACAAACGCACTCGTGATACCAACGATGATGACGCGGATGCCGAAGCTGA
CCGATTAGAACAGCAAAAGCAGAGGAAGGCCGCTGCCCACAGTCGCTTTT
GCTTAGCTTCCCTACATCATCCTGGTATCAATTCTGCGGACATTACCAAC
TTTACGGAAATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_191:27818..29382+

>Gvermi2066.t1 ID=Gvermi2066.t1|Name=Gvermi2066.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1473bp|location=Sequence derived from alignment at ScGOVlb_191:27818..29382+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAAACGTACGAAGAGTGAAAAGAACGAAATCCTTGACGAAGTTGA
CAAACTCCGCAACGAAATCCGTCATCTCAAGAGTGATAATGCACGCTCCC
TGAGAACCACCGATATGACCCTATTCCAAAGTCACTGCAAAGACGCACTT
CGAAACACCAAGAGCGCCGGTTCCAACATTTGCAAGAGCATTGTATACGG
TTGTGGTTTTCTTTCTGCAAAGCACATATCCGACAAAGATTACACCACTC
TGGTCAAGGAACACTCCCTTGATTATGATAACCCTTCCGTTGAATTCTTC
TTCTCCTCCGTTCTTAACAAATGCCCTTCAGATCTTCGCCCAAAGTGCCA
AGCAAAAGATTTTCGCCAGTACATATGGAAGAACACAAACATTGCTGCTA
CCTTCATCAACAAAATCAACCAATGCAGAAACAATCTGAAGGCCACCTTT
GTAAATGATCTCCTCCATCCCTACCTTGATCACTATGTTTTCAATCACAC
CAATGATAACGAAGATTACGAGCGCAACATGCGTCCCCATAACAGCACCA
TTGCCAAACGAAGGGGAACAGAGAAGACCAAAAAAATGTGGTCTCAGTCT
CCAAGCGTCATCTTGGGAAGTCCCAACCTCTACGAAAAGTTTGCCAGCTC
TATATTCTTTGCAGCTACATACGGGCGCTATGACCGAGACACCAACCCAA
AATCAAGCTGGCATGTCGTTGTTGCTCTTTCTGCTTTACACCGTGATGGC
GAATTTTGCTCCAAGTTTGCAACCAAAGGAGATATCTACATAAGCGAAAC
CGCTATGTCCAACCTCAACAACCAGAATTTCAACTCGAAGCTTACTGTTA
CGGAAGAGTCTCTCTACCGTCTTTTTGTCATGAAGGAAATTTACAATGGA
ATTTTCGACGGCAAGTTCCAGCAGCTCCTATGCGCTTATCATCATTACAC
CGAAGACATGATGGCCAACCCCCTACCGAATACTGATCAAGATTCAGACG
ATGAGACGGCGTTCCTTCCCACCGTTTATAAAAACTTGACGTACGACGAG
CTTTCTGAGTACAAAACTACTAACAACATCCACCTACCCGGCCTCGGATT
CAAGAATGGTAATACAAATTCACGCGTTTCAGAAGAGCCGTGCTCTAAAC
CCTGTGTTGAATACTCCCAGTCGACGATAGATATTTACGAGCAGTTGAAG
GAGATTATCATCAAAGAACGCCAAGAAGATAGCAATCACAACAAACAGCA
GCTCATCGATCTCAAGTCGATTCTTCCTCCATCATCACAACAATGCACCG
ACGATTCTAACAAACGCACTCGTGATACCAACGATGATGACGCGGATGCC
GAAGCTGACCGATTAGAACAGCAAAAGCAGAGGAAGGCCGCTGCCCACAG
TCGCTTTTGCTTAGCTTCCCTACATCATCCTGGTATCAATTCTGCGGACA
TTACCAACTTTACGGAAATGTAA
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