Gvermi2060.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2060.t1
Unique NameGvermi2060.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:817..1446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps914
Max annot lvl35128.Thaps914|-
Evalue5.29e-21
EggNOG OGs2CX9Q@1|root,2RWQU@2759|Eukaryota,2XEIM@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2060Gvermi2060Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 817..1446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2060.t1Gvermi2060.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 817..1446 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2060.t1.stop1Gvermi2060.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 817..819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2060.t1.CDS1Gvermi2060.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 817..1138 -
Gvermi2060.t1.CDS2Gvermi2060.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 1322..1446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2060.t1.exon1Gvermi2060.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 817..1138 -
Gvermi2060.t1.exon2Gvermi2060.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 1322..1446 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2060.t1.intron1Gvermi2060.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 1139..1321 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2060.t1.start1Gvermi2060.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 1444..1446 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2060.t1 ID=Gvermi2060.t1|Name=Gvermi2060.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=149bp
MYPLWNAADIRGETGGHQVKVDATTHHTGFHFHNFFESTEEIRHKYLTYG
EPLGKAATAPLGHIHDDLAVAVSCVHGWQNLGSRKFALDGYQSVVGPRPI
FFENDAFRKARHDHLRNIIRCDSETYGMVNGTCNSAQCNDCKTHESCT*
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spliced messenger RNA

>Gvermi2060.t1 ID=Gvermi2060.t1|Name=Gvermi2060.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp|location=Sequence derived from alignment at ScGOVlb_191:817..1446- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCCGCTGTGGAACGCGGCTGATATTCGGGGAGAAACTGGTGGCCA
CCAAGTCAAGGTCGACGCGACCACGCATCACACGGGGTTCCACTTTCACA
ACTTTTTTGAAAGTACCGAGGAAATCCGCCACAAGTATTTAACGTACGGC
GAGCCCTTGGGCAAGGCTGCGACTGCGCCTCTGGGCCACATTCACGACGA
CCTGGCGGTCGCTGTATCGTGCGTCCACGGATGGCAGAACTTGGGCAGCC
GCAAGTTTGCGCTCGACGGGTACCAGAGCGTGGTGGGTCCCCGGCCCATC
TTTTTTGAGAACGACGCCTTTCGCAAAGCGCGGCACGATCATTTGCGGAA
CATCATTCGGTGCGATTCCGAAACGTACGGCATGGTGAACGGGACCTGCA
ACAGCGCACAGTGTAACGATTGCAAGACCCATGAAAGCTGCACATAG
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protein sequence of Gvermi2060.t1

>Gvermi2060.t1 ID=Gvermi2060.t1|Name=Gvermi2060.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=149bp
MYPLWNAADIRGETGGHQVKVDATTHHTGFHFHNFFESTEEIRHKYLTYG
EPLGKAATAPLGHIHDDLAVAVSCVHGWQNLGSRKFALDGYQSVVGPRPI
FFENDAFRKARHDHLRNIIRCDSETYGMVNGTCNSAQCNDCKTHESCT*
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mRNA from alignment at ScGOVlb_191:817..1446-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2060.t1 ID=Gvermi2060.t1|Name=Gvermi2060.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=630bp|location=Sequence derived from alignment at ScGOVlb_191:817..1446- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACCCGCTGTGGAACGCGGCTGATATTCGGGGAGAAACTGGTGGCCA
CCAAGTCAAGGTCGACGCGACCACGCATCACACGGGGTTCCACTTTCACA
ACTTTTTTGAAAGTACCGAGGAAATGTGCGTGTACATGCACAGATGAAAT
TTTGTGCAGTATATATATATATATATATGTCGCGGAGATGAATCGTTTGT
GGTGCCGCTGCCGAGGCCGTGTTTGCTCTTGCGCGCGCCCAACTCACACC
CCTCTTGTTGATTTTCACACAATGTTGCTGGTACTACTGGTGATCCTCGT
AAAAAAAGCCGCCACAAGTATTTAACGTACGGCGAGCCCTTGGGCAAGGC
TGCGACTGCGCCTCTGGGCCACATTCACGACGACCTGGCGGTCGCTGTAT
CGTGCGTCCACGGATGGCAGAACTTGGGCAGCCGCAAGTTTGCGCTCGAC
GGGTACCAGAGCGTGGTGGGTCCCCGGCCCATCTTTTTTGAGAACGACGC
CTTTCGCAAAGCGCGGCACGATCATTTGCGGAACATCATTCGGTGCGATT
CCGAAACGTACGGCATGGTGAACGGGACCTGCAACAGCGCACAGTGTAAC
GATTGCAAGACCCATGAAAGCTGCACATAG
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Coding sequence (CDS) from alignment at ScGOVlb_191:817..1446-

>Gvermi2060.t1 ID=Gvermi2060.t1|Name=Gvermi2060.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=447bp|location=Sequence derived from alignment at ScGOVlb_191:817..1446- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACCCGCTGTGGAACGCGGCTGATATTCGGGGAGAAACTGGTGGCCA
CCAAGTCAAGGTCGACGCGACCACGCATCACACGGGGTTCCACTTTCACA
ACTTTTTTGAAAGTACCGAGGAAATCCGCCACAAGTATTTAACGTACGGC
GAGCCCTTGGGCAAGGCTGCGACTGCGCCTCTGGGCCACATTCACGACGA
CCTGGCGGTCGCTGTATCGTGCGTCCACGGATGGCAGAACTTGGGCAGCC
GCAAGTTTGCGCTCGACGGGTACCAGAGCGTGGTGGGTCCCCGGCCCATC
TTTTTTGAGAACGACGCCTTTCGCAAAGCGCGGCACGATCATTTGCGGAA
CATCATTCGGTGCGATTCCGAAACGTACGGCATGGTGAACGGGACCTGCA
ACAGCGCACAGTGTAACGATTGCAAGACCCATGAAAGCTGCACATAG
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