Gvermi2021.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2021.t1
Unique NameGvermi2021.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length660
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2744832..2746811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2021Gvermi2021Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2744832..2746811 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2021.t1.stop1Gvermi2021.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2744832..2744834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2021.t1.CDS1Gvermi2021.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2744832..2746811 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2021.t1.exon1Gvermi2021.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2744832..2746811 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2021.t1.start1Gvermi2021.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2746809..2746811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2021.t1Gvermi2021.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2744832..2746811 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2021.t1 ID=Gvermi2021.t1|Name=Gvermi2021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp
MEIVLFAVAIACSLGIGGASFQISRRSTQNASNSRSSPSQDGLHIDEDCS
LAKSNDVNRILRKLRKWISPADRAPSQDNQIWYSDGLAEFQRLLEDHSSY
FYNLVSPKERVALNMCESAEDNLCSMQLLTRRKQYIRYPVELKDSSIFNI
ACTCLSLNRPFVVQGFNGRKIKELDLIQEQSWRYFNLSTIINSPLGLSSS
CKCGISRPIEPTVDPETDMVATIVFRLAWTVSKYLPCPCGDDDRVSEEER
FDMYCRAVFCICQRLEDILASMSVHTETDSISASHAGINISHNRWDRKLN
VYGETPSSYGKAMHMISKMYNTFLLAIYSENKVDEALAPSLEGRVASEDV
IETICARLTEAYSAEQCLNWICFNKWNTDEVQKVPVHKFPVHTEIKRAVQ
FMDGAGVRSLGSVSIEKLKPARIPFGKERLEWVSFSEHLSSGVSMMRVPQ
FCTNYNIFCIGRPQLRHLTVISSNEMTFNDNGQDIKVAISKDGAVVSFKR
WTRNVKKVIKGGVVLSEMVSETGFNLWKVLGKDLYKDDFVFVNEALSMKY
GKDVFDFIFWNVMSGKIAVQENSSNASFVPKRCKRQKGVTLTTPLRGDFW
KDKVFLLTENSLYWLPTDGFNYFKVERRTGDGLLTMKEEEELDGPALFKC
SAILDTPVG*
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spliced messenger RNA

>Gvermi2021.t1 ID=Gvermi2021.t1|Name=Gvermi2021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at ScGOVlb_1622:2744832..2746811- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTGTGCTCTTTGCAGTTGCCATTGCTTGTTCTCTGGGCATAGG
GGGAGCTTCTTTTCAAATTTCGCGACGATCTACTCAGAACGCTTCTAATT
CTCGTTCTTCACCAAGTCAAGATGGTCTCCATATCGACGAAGATTGTTCC
CTTGCTAAGTCAAATGATGTAAATCGTATTTTGAGGAAGCTCAGAAAATG
GATTTCTCCAGCAGATAGGGCTCCTTCCCAAGACAACCAAATCTGGTACT
CTGATGGTCTTGCAGAGTTTCAAAGACTTCTGGAAGACCACAGCTCTTAT
TTTTATAACCTTGTTTCACCAAAAGAACGCGTAGCACTTAATATGTGCGA
GTCTGCCGAGGATAATCTTTGTAGCATGCAGCTTCTGACTCGTAGAAAGC
AGTACATCCGATATCCGGTTGAGCTGAAGGATTCATCCATATTTAATATT
GCATGTACATGCCTTTCTTTGAATCGGCCTTTTGTTGTTCAAGGTTTTAA
CGGAAGGAAGATAAAGGAGCTGGATCTTATTCAAGAACAATCTTGGCGTT
ATTTTAATCTAAGCACAATCATTAACAGCCCATTGGGCTTATCCAGTTCA
TGCAAATGTGGCATAAGCCGCCCCATAGAACCAACCGTTGATCCTGAAAC
AGATATGGTCGCAACAATCGTTTTCAGGTTAGCATGGACTGTATCGAAGT
ACTTACCATGTCCTTGCGGAGACGATGACAGGGTTTCCGAAGAGGAAAGA
TTTGACATGTACTGCCGCGCTGTGTTTTGCATTTGTCAAAGGCTTGAAGA
CATTCTTGCGTCAATGTCCGTACATACAGAGACTGATTCCATATCAGCAT
CACATGCTGGCATCAATATCAGCCACAATCGTTGGGACCGTAAATTAAAT
GTATATGGTGAAACCCCTTCGAGCTATGGAAAGGCTATGCATATGATTTC
CAAAATGTATAACACCTTTTTGTTGGCAATATACTCTGAAAACAAGGTGG
ATGAAGCATTAGCCCCAAGTCTGGAAGGACGGGTTGCAAGTGAGGACGTC
ATTGAAACCATATGTGCGAGACTAACAGAAGCATATAGTGCAGAGCAGTG
CTTGAACTGGATTTGCTTCAACAAATGGAACACTGATGAAGTTCAAAAAG
TGCCTGTGCACAAATTCCCAGTTCACACTGAGATCAAACGAGCCGTGCAG
TTCATGGATGGTGCAGGTGTTCGGTCCTTAGGAAGTGTGAGCATCGAAAA
ACTGAAGCCCGCACGGATCCCATTTGGAAAGGAGAGATTAGAATGGGTAT
CATTTTCAGAGCATTTGTCATCAGGGGTATCCATGATGAGAGTACCGCAG
TTTTGTACAAATTACAATATATTTTGTATTGGAAGACCTCAATTGAGGCA
TCTGACAGTGATTAGTTCAAACGAAATGACATTCAATGACAATGGGCAGG
ACATCAAGGTTGCCATTAGCAAGGACGGAGCGGTAGTTTCTTTCAAGAGG
TGGACGAGAAACGTGAAGAAGGTGATTAAGGGTGGAGTTGTCTTGTCGGA
AATGGTCAGTGAAACAGGATTTAATCTATGGAAAGTTTTGGGCAAGGACC
TTTATAAAGACGACTTTGTCTTCGTGAATGAAGCTCTGTCGATGAAGTAT
GGTAAGGACGTATTCGACTTTATTTTCTGGAACGTGATGTCTGGAAAAAT
CGCAGTGCAGGAGAACTCGTCCAACGCTTCTTTTGTACCAAAGAGGTGCA
AGAGACAAAAAGGAGTGACATTGACTACTCCATTGAGGGGGGATTTCTGG
AAGGACAAAGTATTCCTTCTAACCGAGAACAGTCTCTATTGGCTTCCGAC
AGACGGTTTCAATTATTTCAAGGTAGAAAGACGAACCGGAGATGGATTAC
TGACAATGAAAGAAGAAGAAGAACTTGATGGACCAGCTCTGTTCAAATGC
TCTGCCATATTAGACACTCCCGTCGGCTAA
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protein sequence of Gvermi2021.t1

>Gvermi2021.t1 ID=Gvermi2021.t1|Name=Gvermi2021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=660bp
MEIVLFAVAIACSLGIGGASFQISRRSTQNASNSRSSPSQDGLHIDEDCS
LAKSNDVNRILRKLRKWISPADRAPSQDNQIWYSDGLAEFQRLLEDHSSY
FYNLVSPKERVALNMCESAEDNLCSMQLLTRRKQYIRYPVELKDSSIFNI
ACTCLSLNRPFVVQGFNGRKIKELDLIQEQSWRYFNLSTIINSPLGLSSS
CKCGISRPIEPTVDPETDMVATIVFRLAWTVSKYLPCPCGDDDRVSEEER
FDMYCRAVFCICQRLEDILASMSVHTETDSISASHAGINISHNRWDRKLN
VYGETPSSYGKAMHMISKMYNTFLLAIYSENKVDEALAPSLEGRVASEDV
IETICARLTEAYSAEQCLNWICFNKWNTDEVQKVPVHKFPVHTEIKRAVQ
FMDGAGVRSLGSVSIEKLKPARIPFGKERLEWVSFSEHLSSGVSMMRVPQ
FCTNYNIFCIGRPQLRHLTVISSNEMTFNDNGQDIKVAISKDGAVVSFKR
WTRNVKKVIKGGVVLSEMVSETGFNLWKVLGKDLYKDDFVFVNEALSMKY
GKDVFDFIFWNVMSGKIAVQENSSNASFVPKRCKRQKGVTLTTPLRGDFW
KDKVFLLTENSLYWLPTDGFNYFKVERRTGDGLLTMKEEEELDGPALFKC
SAILDTPVG*
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mRNA from alignment at ScGOVlb_1622:2744832..2746811-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2021.t1 ID=Gvermi2021.t1|Name=Gvermi2021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at ScGOVlb_1622:2744832..2746811- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAATTGTGCTCTTTGCAGTTGCCATTGCTTGTTCTCTGGGCATAGG
GGGAGCTTCTTTTCAAATTTCGCGACGATCTACTCAGAACGCTTCTAATT
CTCGTTCTTCACCAAGTCAAGATGGTCTCCATATCGACGAAGATTGTTCC
CTTGCTAAGTCAAATGATGTAAATCGTATTTTGAGGAAGCTCAGAAAATG
GATTTCTCCAGCAGATAGGGCTCCTTCCCAAGACAACCAAATCTGGTACT
CTGATGGTCTTGCAGAGTTTCAAAGACTTCTGGAAGACCACAGCTCTTAT
TTTTATAACCTTGTTTCACCAAAAGAACGCGTAGCACTTAATATGTGCGA
GTCTGCCGAGGATAATCTTTGTAGCATGCAGCTTCTGACTCGTAGAAAGC
AGTACATCCGATATCCGGTTGAGCTGAAGGATTCATCCATATTTAATATT
GCATGTACATGCCTTTCTTTGAATCGGCCTTTTGTTGTTCAAGGTTTTAA
CGGAAGGAAGATAAAGGAGCTGGATCTTATTCAAGAACAATCTTGGCGTT
ATTTTAATCTAAGCACAATCATTAACAGCCCATTGGGCTTATCCAGTTCA
TGCAAATGTGGCATAAGCCGCCCCATAGAACCAACCGTTGATCCTGAAAC
AGATATGGTCGCAACAATCGTTTTCAGGTTAGCATGGACTGTATCGAAGT
ACTTACCATGTCCTTGCGGAGACGATGACAGGGTTTCCGAAGAGGAAAGA
TTTGACATGTACTGCCGCGCTGTGTTTTGCATTTGTCAAAGGCTTGAAGA
CATTCTTGCGTCAATGTCCGTACATACAGAGACTGATTCCATATCAGCAT
CACATGCTGGCATCAATATCAGCCACAATCGTTGGGACCGTAAATTAAAT
GTATATGGTGAAACCCCTTCGAGCTATGGAAAGGCTATGCATATGATTTC
CAAAATGTATAACACCTTTTTGTTGGCAATATACTCTGAAAACAAGGTGG
ATGAAGCATTAGCCCCAAGTCTGGAAGGACGGGTTGCAAGTGAGGACGTC
ATTGAAACCATATGTGCGAGACTAACAGAAGCATATAGTGCAGAGCAGTG
CTTGAACTGGATTTGCTTCAACAAATGGAACACTGATGAAGTTCAAAAAG
TGCCTGTGCACAAATTCCCAGTTCACACTGAGATCAAACGAGCCGTGCAG
TTCATGGATGGTGCAGGTGTTCGGTCCTTAGGAAGTGTGAGCATCGAAAA
ACTGAAGCCCGCACGGATCCCATTTGGAAAGGAGAGATTAGAATGGGTAT
CATTTTCAGAGCATTTGTCATCAGGGGTATCCATGATGAGAGTACCGCAG
TTTTGTACAAATTACAATATATTTTGTATTGGAAGACCTCAATTGAGGCA
TCTGACAGTGATTAGTTCAAACGAAATGACATTCAATGACAATGGGCAGG
ACATCAAGGTTGCCATTAGCAAGGACGGAGCGGTAGTTTCTTTCAAGAGG
TGGACGAGAAACGTGAAGAAGGTGATTAAGGGTGGAGTTGTCTTGTCGGA
AATGGTCAGTGAAACAGGATTTAATCTATGGAAAGTTTTGGGCAAGGACC
TTTATAAAGACGACTTTGTCTTCGTGAATGAAGCTCTGTCGATGAAGTAT
GGTAAGGACGTATTCGACTTTATTTTCTGGAACGTGATGTCTGGAAAAAT
CGCAGTGCAGGAGAACTCGTCCAACGCTTCTTTTGTACCAAAGAGGTGCA
AGAGACAAAAAGGAGTGACATTGACTACTCCATTGAGGGGGGATTTCTGG
AAGGACAAAGTATTCCTTCTAACCGAGAACAGTCTCTATTGGCTTCCGAC
AGACGGTTTCAATTATTTCAAGGTAGAAAGACGAACCGGAGATGGATTAC
TGACAATGAAAGAAGAAGAAGAACTTGATGGACCAGCTCTGTTCAAATGC
TCTGCCATATTAGACACTCCCGTCGGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2744832..2746811-

>Gvermi2021.t1 ID=Gvermi2021.t1|Name=Gvermi2021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1980bp|location=Sequence derived from alignment at ScGOVlb_1622:2744832..2746811- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAATTGTGCTCTTTGCAGTTGCCATTGCTTGTTCTCTGGGCATAGG
GGGAGCTTCTTTTCAAATTTCGCGACGATCTACTCAGAACGCTTCTAATT
CTCGTTCTTCACCAAGTCAAGATGGTCTCCATATCGACGAAGATTGTTCC
CTTGCTAAGTCAAATGATGTAAATCGTATTTTGAGGAAGCTCAGAAAATG
GATTTCTCCAGCAGATAGGGCTCCTTCCCAAGACAACCAAATCTGGTACT
CTGATGGTCTTGCAGAGTTTCAAAGACTTCTGGAAGACCACAGCTCTTAT
TTTTATAACCTTGTTTCACCAAAAGAACGCGTAGCACTTAATATGTGCGA
GTCTGCCGAGGATAATCTTTGTAGCATGCAGCTTCTGACTCGTAGAAAGC
AGTACATCCGATATCCGGTTGAGCTGAAGGATTCATCCATATTTAATATT
GCATGTACATGCCTTTCTTTGAATCGGCCTTTTGTTGTTCAAGGTTTTAA
CGGAAGGAAGATAAAGGAGCTGGATCTTATTCAAGAACAATCTTGGCGTT
ATTTTAATCTAAGCACAATCATTAACAGCCCATTGGGCTTATCCAGTTCA
TGCAAATGTGGCATAAGCCGCCCCATAGAACCAACCGTTGATCCTGAAAC
AGATATGGTCGCAACAATCGTTTTCAGGTTAGCATGGACTGTATCGAAGT
ACTTACCATGTCCTTGCGGAGACGATGACAGGGTTTCCGAAGAGGAAAGA
TTTGACATGTACTGCCGCGCTGTGTTTTGCATTTGTCAAAGGCTTGAAGA
CATTCTTGCGTCAATGTCCGTACATACAGAGACTGATTCCATATCAGCAT
CACATGCTGGCATCAATATCAGCCACAATCGTTGGGACCGTAAATTAAAT
GTATATGGTGAAACCCCTTCGAGCTATGGAAAGGCTATGCATATGATTTC
CAAAATGTATAACACCTTTTTGTTGGCAATATACTCTGAAAACAAGGTGG
ATGAAGCATTAGCCCCAAGTCTGGAAGGACGGGTTGCAAGTGAGGACGTC
ATTGAAACCATATGTGCGAGACTAACAGAAGCATATAGTGCAGAGCAGTG
CTTGAACTGGATTTGCTTCAACAAATGGAACACTGATGAAGTTCAAAAAG
TGCCTGTGCACAAATTCCCAGTTCACACTGAGATCAAACGAGCCGTGCAG
TTCATGGATGGTGCAGGTGTTCGGTCCTTAGGAAGTGTGAGCATCGAAAA
ACTGAAGCCCGCACGGATCCCATTTGGAAAGGAGAGATTAGAATGGGTAT
CATTTTCAGAGCATTTGTCATCAGGGGTATCCATGATGAGAGTACCGCAG
TTTTGTACAAATTACAATATATTTTGTATTGGAAGACCTCAATTGAGGCA
TCTGACAGTGATTAGTTCAAACGAAATGACATTCAATGACAATGGGCAGG
ACATCAAGGTTGCCATTAGCAAGGACGGAGCGGTAGTTTCTTTCAAGAGG
TGGACGAGAAACGTGAAGAAGGTGATTAAGGGTGGAGTTGTCTTGTCGGA
AATGGTCAGTGAAACAGGATTTAATCTATGGAAAGTTTTGGGCAAGGACC
TTTATAAAGACGACTTTGTCTTCGTGAATGAAGCTCTGTCGATGAAGTAT
GGTAAGGACGTATTCGACTTTATTTTCTGGAACGTGATGTCTGGAAAAAT
CGCAGTGCAGGAGAACTCGTCCAACGCTTCTTTTGTACCAAAGAGGTGCA
AGAGACAAAAAGGAGTGACATTGACTACTCCATTGAGGGGGGATTTCTGG
AAGGACAAAGTATTCCTTCTAACCGAGAACAGTCTCTATTGGCTTCCGAC
AGACGGTTTCAATTATTTCAAGGTAGAAAGACGAACCGGAGATGGATTAC
TGACAATGAAAGAAGAAGAAGAACTTGATGGACCAGCTCTGTTCAAATGC
TCTGCCATATTAGACACTCCCGTCGGCTAA
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