Gvermi2005.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2005.t1
Unique NameGvermi2005.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2692432..2693955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1134474.O59_001487
PFAMsBig_2,UnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue9.83e-38
EggNOG OGsCOG2931@1|root,COG5492@1|root,COG2931@2|Bacteria,COG5492@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria
DescriptionASPIC and UnbV
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2005Gvermi2005Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2692432..2693955 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2005.t1.stop1Gvermi2005.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2692432..2692434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2005.t1.CDS1Gvermi2005.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2692432..2693955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2005.t1.exon1Gvermi2005.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2692432..2693955 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2005.t1.start1Gvermi2005.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2693953..2693955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2005.t1Gvermi2005.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2692432..2693955 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2005.t1 ID=Gvermi2005.t1|Name=Gvermi2005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=508bp
MPALFGVCACAALLLLRAALAQTVPRFRDWSSRAGLDPRRPRLKKYGGPT
VVDLDRDGWPDLIFGHHDAGYAQLFFNNRNGTFTQSPWRVWRDTHGIVAG
PISPFNRAMRFVMCVGGNFGRSPSHPLMFEVRGATREVVDVSAAAGLARR
GARGRTALFMSVAARKHVAFPDVLLLNAEPRAARASNFAYEARGDGRYRA
RAVRRLAQDRNWYGAVTDVDGDGVMELVSFWKLKMWQVQRPYVFRDVSER
VFPPEVLRTGVVSVAELDYDNDGDFDLYVARTRTGDLKWVPGSDFNDYLL
ENRGGRYVDVSAAAGIPRGTMSRGVTVGDFNNDGFVDILVTQYSAAAVML
LNRGDGTFRRADGLVWRSRGVRGDGAAAVDWDGDGRLDVVASNGDQHVAK
WGGHYRLFRNMLPLTPRSRFVTVRVGDAPNLSATPLHATVLVVAGALRMM
RRVGSNGSAVSRAYLETLHFGLGARAVVDRVFVRYASGFVGVARNVRHGS
TVVIGRV*
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spliced messenger RNA

>Gvermi2005.t1 ID=Gvermi2005.t1|Name=Gvermi2005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_1622:2692432..2693955- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCCTGTTCGGCGTGTGCGCGTGCGCCGCGCTGCTGCTGCTGCG
CGCCGCGCTCGCGCAGACCGTGCCGCGCTTCCGTGACTGGTCGTCGCGCG
CCGGGCTCGACCCGCGCAGGCCGCGCCTCAAGAAGTACGGCGGCCCCACT
GTGGTGGATCTGGACCGCGACGGCTGGCCCGACCTCATCTTCGGCCACCA
CGACGCCGGCTACGCGCAGCTGTTCTTCAACAACCGCAACGGCACCTTCA
CGCAGTCGCCGTGGCGCGTGTGGCGCGACACGCACGGCATCGTCGCCGGC
CCCATCTCGCCCTTCAACCGCGCCATGCGCTTCGTCATGTGCGTGGGCGG
CAACTTTGGCCGCAGCCCGTCGCACCCGCTCATGTTCGAGGTGCGCGGCG
CCACGCGCGAGGTGGTGGACGTGTCGGCCGCCGCCGGGCTGGCGCGGCGC
GGCGCGCGCGGCCGCACCGCGCTCTTCATGTCCGTGGCCGCGCGCAAGCA
CGTGGCGTTCCCGGACGTGCTGCTGCTCAACGCCGAGCCGCGCGCCGCGC
GCGCGTCCAACTTTGCGTACGAGGCGCGCGGCGACGGCCGCTACCGCGCG
CGCGCCGTGCGCCGCCTTGCGCAAGACCGCAACTGGTACGGCGCCGTCAC
CGACGTGGACGGCGACGGCGTGATGGAGCTGGTGTCGTTCTGGAAGCTCA
AGATGTGGCAGGTGCAGCGGCCGTACGTGTTCCGCGACGTATCGGAGCGC
GTGTTCCCGCCCGAGGTGCTGCGCACCGGCGTGGTGTCCGTGGCGGAGCT
GGACTACGACAACGACGGCGACTTTGACCTGTACGTGGCGCGCACGCGCA
CGGGCGACCTCAAGTGGGTGCCCGGCTCCGACTTCAACGACTACCTGCTG
GAGAACCGCGGCGGGCGCTACGTGGACGTGAGCGCGGCGGCGGGCATCCC
GCGCGGCACCATGTCGCGCGGCGTCACCGTGGGCGACTTCAACAACGACG
GCTTTGTGGACATCCTGGTGACGCAGTACAGCGCGGCGGCCGTGATGCTG
CTCAATCGCGGCGACGGCACGTTCCGGCGCGCGGACGGGCTGGTGTGGCG
GTCGCGCGGCGTGCGCGGCGACGGCGCGGCCGCCGTAGACTGGGACGGCG
ACGGGCGGCTGGACGTGGTGGCCAGCAACGGCGACCAGCACGTGGCGAAG
TGGGGCGGGCACTACCGGCTGTTCCGCAACATGCTGCCGCTCACGCCGCG
CTCGCGCTTCGTGACCGTGCGCGTGGGCGACGCGCCCAACCTGAGCGCCA
CGCCGCTGCACGCCACGGTGCTGGTGGTGGCCGGCGCGCTGCGCATGATG
CGCCGCGTGGGGTCCAACGGCAGCGCCGTGTCGCGCGCGTACCTGGAGAC
GCTGCACTTTGGGCTGGGCGCGCGCGCCGTCGTCGACCGCGTGTTTGTGC
GCTACGCCAGCGGCTTTGTGGGCGTGGCGCGCAACGTGCGCCACGGCTCC
ACCGTCGTCATCGGCCGCGTGTGA
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protein sequence of Gvermi2005.t1

>Gvermi2005.t1 ID=Gvermi2005.t1|Name=Gvermi2005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=508bp
MPALFGVCACAALLLLRAALAQTVPRFRDWSSRAGLDPRRPRLKKYGGPT
VVDLDRDGWPDLIFGHHDAGYAQLFFNNRNGTFTQSPWRVWRDTHGIVAG
PISPFNRAMRFVMCVGGNFGRSPSHPLMFEVRGATREVVDVSAAAGLARR
GARGRTALFMSVAARKHVAFPDVLLLNAEPRAARASNFAYEARGDGRYRA
RAVRRLAQDRNWYGAVTDVDGDGVMELVSFWKLKMWQVQRPYVFRDVSER
VFPPEVLRTGVVSVAELDYDNDGDFDLYVARTRTGDLKWVPGSDFNDYLL
ENRGGRYVDVSAAAGIPRGTMSRGVTVGDFNNDGFVDILVTQYSAAAVML
LNRGDGTFRRADGLVWRSRGVRGDGAAAVDWDGDGRLDVVASNGDQHVAK
WGGHYRLFRNMLPLTPRSRFVTVRVGDAPNLSATPLHATVLVVAGALRMM
RRVGSNGSAVSRAYLETLHFGLGARAVVDRVFVRYASGFVGVARNVRHGS
TVVIGRV*
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mRNA from alignment at ScGOVlb_1622:2692432..2693955-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2005.t1 ID=Gvermi2005.t1|Name=Gvermi2005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_1622:2692432..2693955- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGCCCTGTTCGGCGTGTGCGCGTGCGCCGCGCTGCTGCTGCTGCG
CGCCGCGCTCGCGCAGACCGTGCCGCGCTTCCGTGACTGGTCGTCGCGCG
CCGGGCTCGACCCGCGCAGGCCGCGCCTCAAGAAGTACGGCGGCCCCACT
GTGGTGGATCTGGACCGCGACGGCTGGCCCGACCTCATCTTCGGCCACCA
CGACGCCGGCTACGCGCAGCTGTTCTTCAACAACCGCAACGGCACCTTCA
CGCAGTCGCCGTGGCGCGTGTGGCGCGACACGCACGGCATCGTCGCCGGC
CCCATCTCGCCCTTCAACCGCGCCATGCGCTTCGTCATGTGCGTGGGCGG
CAACTTTGGCCGCAGCCCGTCGCACCCGCTCATGTTCGAGGTGCGCGGCG
CCACGCGCGAGGTGGTGGACGTGTCGGCCGCCGCCGGGCTGGCGCGGCGC
GGCGCGCGCGGCCGCACCGCGCTCTTCATGTCCGTGGCCGCGCGCAAGCA
CGTGGCGTTCCCGGACGTGCTGCTGCTCAACGCCGAGCCGCGCGCCGCGC
GCGCGTCCAACTTTGCGTACGAGGCGCGCGGCGACGGCCGCTACCGCGCG
CGCGCCGTGCGCCGCCTTGCGCAAGACCGCAACTGGTACGGCGCCGTCAC
CGACGTGGACGGCGACGGCGTGATGGAGCTGGTGTCGTTCTGGAAGCTCA
AGATGTGGCAGGTGCAGCGGCCGTACGTGTTCCGCGACGTATCGGAGCGC
GTGTTCCCGCCCGAGGTGCTGCGCACCGGCGTGGTGTCCGTGGCGGAGCT
GGACTACGACAACGACGGCGACTTTGACCTGTACGTGGCGCGCACGCGCA
CGGGCGACCTCAAGTGGGTGCCCGGCTCCGACTTCAACGACTACCTGCTG
GAGAACCGCGGCGGGCGCTACGTGGACGTGAGCGCGGCGGCGGGCATCCC
GCGCGGCACCATGTCGCGCGGCGTCACCGTGGGCGACTTCAACAACGACG
GCTTTGTGGACATCCTGGTGACGCAGTACAGCGCGGCGGCCGTGATGCTG
CTCAATCGCGGCGACGGCACGTTCCGGCGCGCGGACGGGCTGGTGTGGCG
GTCGCGCGGCGTGCGCGGCGACGGCGCGGCCGCCGTAGACTGGGACGGCG
ACGGGCGGCTGGACGTGGTGGCCAGCAACGGCGACCAGCACGTGGCGAAG
TGGGGCGGGCACTACCGGCTGTTCCGCAACATGCTGCCGCTCACGCCGCG
CTCGCGCTTCGTGACCGTGCGCGTGGGCGACGCGCCCAACCTGAGCGCCA
CGCCGCTGCACGCCACGGTGCTGGTGGTGGCCGGCGCGCTGCGCATGATG
CGCCGCGTGGGGTCCAACGGCAGCGCCGTGTCGCGCGCGTACCTGGAGAC
GCTGCACTTTGGGCTGGGCGCGCGCGCCGTCGTCGACCGCGTGTTTGTGC
GCTACGCCAGCGGCTTTGTGGGCGTGGCGCGCAACGTGCGCCACGGCTCC
ACCGTCGTCATCGGCCGCGTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2692432..2693955-

>Gvermi2005.t1 ID=Gvermi2005.t1|Name=Gvermi2005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1524bp|location=Sequence derived from alignment at ScGOVlb_1622:2692432..2693955- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGCCCTGTTCGGCGTGTGCGCGTGCGCCGCGCTGCTGCTGCTGCG
CGCCGCGCTCGCGCAGACCGTGCCGCGCTTCCGTGACTGGTCGTCGCGCG
CCGGGCTCGACCCGCGCAGGCCGCGCCTCAAGAAGTACGGCGGCCCCACT
GTGGTGGATCTGGACCGCGACGGCTGGCCCGACCTCATCTTCGGCCACCA
CGACGCCGGCTACGCGCAGCTGTTCTTCAACAACCGCAACGGCACCTTCA
CGCAGTCGCCGTGGCGCGTGTGGCGCGACACGCACGGCATCGTCGCCGGC
CCCATCTCGCCCTTCAACCGCGCCATGCGCTTCGTCATGTGCGTGGGCGG
CAACTTTGGCCGCAGCCCGTCGCACCCGCTCATGTTCGAGGTGCGCGGCG
CCACGCGCGAGGTGGTGGACGTGTCGGCCGCCGCCGGGCTGGCGCGGCGC
GGCGCGCGCGGCCGCACCGCGCTCTTCATGTCCGTGGCCGCGCGCAAGCA
CGTGGCGTTCCCGGACGTGCTGCTGCTCAACGCCGAGCCGCGCGCCGCGC
GCGCGTCCAACTTTGCGTACGAGGCGCGCGGCGACGGCCGCTACCGCGCG
CGCGCCGTGCGCCGCCTTGCGCAAGACCGCAACTGGTACGGCGCCGTCAC
CGACGTGGACGGCGACGGCGTGATGGAGCTGGTGTCGTTCTGGAAGCTCA
AGATGTGGCAGGTGCAGCGGCCGTACGTGTTCCGCGACGTATCGGAGCGC
GTGTTCCCGCCCGAGGTGCTGCGCACCGGCGTGGTGTCCGTGGCGGAGCT
GGACTACGACAACGACGGCGACTTTGACCTGTACGTGGCGCGCACGCGCA
CGGGCGACCTCAAGTGGGTGCCCGGCTCCGACTTCAACGACTACCTGCTG
GAGAACCGCGGCGGGCGCTACGTGGACGTGAGCGCGGCGGCGGGCATCCC
GCGCGGCACCATGTCGCGCGGCGTCACCGTGGGCGACTTCAACAACGACG
GCTTTGTGGACATCCTGGTGACGCAGTACAGCGCGGCGGCCGTGATGCTG
CTCAATCGCGGCGACGGCACGTTCCGGCGCGCGGACGGGCTGGTGTGGCG
GTCGCGCGGCGTGCGCGGCGACGGCGCGGCCGCCGTAGACTGGGACGGCG
ACGGGCGGCTGGACGTGGTGGCCAGCAACGGCGACCAGCACGTGGCGAAG
TGGGGCGGGCACTACCGGCTGTTCCGCAACATGCTGCCGCTCACGCCGCG
CTCGCGCTTCGTGACCGTGCGCGTGGGCGACGCGCCCAACCTGAGCGCCA
CGCCGCTGCACGCCACGGTGCTGGTGGTGGCCGGCGCGCTGCGCATGATG
CGCCGCGTGGGGTCCAACGGCAGCGCCGTGTCGCGCGCGTACCTGGAGAC
GCTGCACTTTGGGCTGGGCGCGCGCGCCGTCGTCGACCGCGTGTTTGTGC
GCTACGCCAGCGGCTTTGTGGGCGTGGCGCGCAACGTGCGCCACGGCTCC
ACCGTCGTCATCGGCCGCGTGTGA
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