Gvermi2003.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2003.t1
Unique NameGvermi2003.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2687658..2689202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705580.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue2.41e-109
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2003Gvermi2003Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2687658..2689202 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2003.t1.stop1Gvermi2003.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2687658..2687660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2003.t1.CDS1Gvermi2003.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2687658..2689202 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2003.t1.exon1Gvermi2003.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2687658..2689202 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2003.t1.start1Gvermi2003.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2689200..2689202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2003.t1Gvermi2003.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2687658..2689202 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2003.t1 ID=Gvermi2003.t1|Name=Gvermi2003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=515bp
MKSLTAANEGRAQSPPPPGAPTAAAAAAVALPRWRIILCAVAMCGVSVSY
SAQINLGTSQLLLLGLSERAVSLAWMAGPLSGLIVQPIVGHFSDRCASPF
GRRRPFLVAGAALTAAALLLFANAAAAARALGAAHAALPIAISAFFLLDF
SVQAVQGPLRALVTEFVPRHQRHIGNAYIGVFTGLGNLLGSAFTAVGLAD
YVPYFEHDVQAVCAVAALVLLLTVAVSVCFTHDAPLSLREYEAVAHGSSD
AIEIAAQPDAPPSPPSAPVAPASFLLALRNLPTPYWRVFSIQLCTWCGFF
ALFVYVNAWVGKNVYLGDGTAPAGSDKRAVFDQGVRLGGKGNAVTAAVTL
VFSLALPALVRRFGSMSIYAASQLVEAAVLMAAPFIRGSTPGEPPSRALK
AVTVADIGLFGIVWGTTMGVPWTLIGDALESKPWYRDRVGLFQMIFNASQ
SGPQLIVACVAPIILALFNDDPSAVMFFGGVLALVGALLVVVLGVGKPVS
AGETSKVLLPVHSP*
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spliced messenger RNA

>Gvermi2003.t1 ID=Gvermi2003.t1|Name=Gvermi2003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at ScGOVlb_1622:2687658..2689202- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCGCTCACCGCCGCCAACGAGGGGCGCGCCCAGTCGCCGCCGCC
GCCCGGCGCGCCGACCGCCGCCGCCGCCGCCGCCGTCGCGCTGCCGCGCT
GGCGTATCATCCTGTGCGCAGTGGCCATGTGCGGCGTCTCCGTCTCGTAC
TCGGCGCAAATCAACCTCGGCACCTCGCAGCTGCTGCTGCTCGGCCTCTC
CGAGCGCGCCGTCTCGCTCGCCTGGATGGCCGGTCCCCTATCCGGCCTCA
TCGTCCAGCCCATCGTGGGCCACTTCTCCGACCGCTGCGCGTCGCCGTTC
GGCCGGCGCCGCCCCTTCCTCGTCGCCGGCGCCGCCCTCACCGCCGCCGC
CCTGCTGCTCTTTGCCAACGCCGCCGCCGCCGCGCGCGCCCTGGGCGCCG
CGCACGCCGCCCTCCCCATCGCCATCTCCGCCTTCTTCCTGCTCGACTTT
TCCGTCCAGGCCGTGCAGGGGCCCCTGCGCGCCCTCGTCACCGAGTTTGT
GCCGCGCCACCAGCGCCACATCGGCAACGCCTACATTGGCGTCTTCACCG
GCCTTGGCAACCTGCTCGGCAGCGCCTTCACCGCCGTCGGCCTCGCCGAC
TATGTCCCCTATTTTGAGCACGACGTGCAGGCCGTCTGTGCCGTCGCCGC
CCTCGTCCTCCTGCTCACCGTCGCCGTCTCGGTGTGCTTCACGCACGACG
CCCCGCTCTCGCTGCGCGAGTACGAGGCCGTCGCCCACGGCTCGAGTGAC
GCCATCGAAATCGCCGCGCAGCCCGACGCCCCGCCCTCCCCGCCCTCTGC
GCCCGTCGCGCCCGCCTCCTTCCTGCTCGCCCTGCGCAACCTGCCCACCC
CGTACTGGCGCGTCTTTTCCATCCAGCTCTGCACCTGGTGCGGCTTCTTC
GCCCTCTTCGTGTACGTCAACGCCTGGGTCGGAAAGAACGTGTATCTGGG
CGACGGCACGGCGCCGGCCGGCAGCGACAAGCGCGCCGTCTTCGACCAAG
GCGTGCGCCTGGGCGGCAAGGGAAACGCCGTCACCGCCGCCGTCACCCTG
GTCTTCTCGCTGGCGCTGCCGGCGCTCGTGCGCCGCTTCGGCAGCATGTC
CATCTACGCAGCGAGCCAGCTCGTCGAGGCCGCCGTGCTCATGGCCGCGC
CGTTCATTCGCGGCAGCACACCTGGTGAGCCGCCGTCGCGCGCGCTCAAG
GCCGTCACCGTCGCGGACATCGGCCTGTTCGGCATCGTGTGGGGAACCAC
CATGGGCGTGCCCTGGACCCTCATCGGAGACGCGCTGGAATCGAAGCCGT
GGTATCGAGACCGCGTCGGTCTGTTTCAGATGATTTTCAACGCCAGCCAA
AGCGGGCCGCAGCTCATCGTCGCGTGCGTCGCTCCCATTATTCTCGCCCT
CTTCAACGACGACCCTTCCGCCGTCATGTTTTTCGGCGGTGTGCTGGCCC
TTGTTGGCGCACTGCTCGTCGTCGTACTTGGCGTCGGCAAACCGGTGTCC
GCCGGAGAAACCTCCAAAGTGCTACTACCGGTTCATTCTCCCTGA
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protein sequence of Gvermi2003.t1

>Gvermi2003.t1 ID=Gvermi2003.t1|Name=Gvermi2003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=515bp
MKSLTAANEGRAQSPPPPGAPTAAAAAAVALPRWRIILCAVAMCGVSVSY
SAQINLGTSQLLLLGLSERAVSLAWMAGPLSGLIVQPIVGHFSDRCASPF
GRRRPFLVAGAALTAAALLLFANAAAAARALGAAHAALPIAISAFFLLDF
SVQAVQGPLRALVTEFVPRHQRHIGNAYIGVFTGLGNLLGSAFTAVGLAD
YVPYFEHDVQAVCAVAALVLLLTVAVSVCFTHDAPLSLREYEAVAHGSSD
AIEIAAQPDAPPSPPSAPVAPASFLLALRNLPTPYWRVFSIQLCTWCGFF
ALFVYVNAWVGKNVYLGDGTAPAGSDKRAVFDQGVRLGGKGNAVTAAVTL
VFSLALPALVRRFGSMSIYAASQLVEAAVLMAAPFIRGSTPGEPPSRALK
AVTVADIGLFGIVWGTTMGVPWTLIGDALESKPWYRDRVGLFQMIFNASQ
SGPQLIVACVAPIILALFNDDPSAVMFFGGVLALVGALLVVVLGVGKPVS
AGETSKVLLPVHSP*
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mRNA from alignment at ScGOVlb_1622:2687658..2689202-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2003.t1 ID=Gvermi2003.t1|Name=Gvermi2003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at ScGOVlb_1622:2687658..2689202- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCGCTCACCGCCGCCAACGAGGGGCGCGCCCAGTCGCCGCCGCC
GCCCGGCGCGCCGACCGCCGCCGCCGCCGCCGCCGTCGCGCTGCCGCGCT
GGCGTATCATCCTGTGCGCAGTGGCCATGTGCGGCGTCTCCGTCTCGTAC
TCGGCGCAAATCAACCTCGGCACCTCGCAGCTGCTGCTGCTCGGCCTCTC
CGAGCGCGCCGTCTCGCTCGCCTGGATGGCCGGTCCCCTATCCGGCCTCA
TCGTCCAGCCCATCGTGGGCCACTTCTCCGACCGCTGCGCGTCGCCGTTC
GGCCGGCGCCGCCCCTTCCTCGTCGCCGGCGCCGCCCTCACCGCCGCCGC
CCTGCTGCTCTTTGCCAACGCCGCCGCCGCCGCGCGCGCCCTGGGCGCCG
CGCACGCCGCCCTCCCCATCGCCATCTCCGCCTTCTTCCTGCTCGACTTT
TCCGTCCAGGCCGTGCAGGGGCCCCTGCGCGCCCTCGTCACCGAGTTTGT
GCCGCGCCACCAGCGCCACATCGGCAACGCCTACATTGGCGTCTTCACCG
GCCTTGGCAACCTGCTCGGCAGCGCCTTCACCGCCGTCGGCCTCGCCGAC
TATGTCCCCTATTTTGAGCACGACGTGCAGGCCGTCTGTGCCGTCGCCGC
CCTCGTCCTCCTGCTCACCGTCGCCGTCTCGGTGTGCTTCACGCACGACG
CCCCGCTCTCGCTGCGCGAGTACGAGGCCGTCGCCCACGGCTCGAGTGAC
GCCATCGAAATCGCCGCGCAGCCCGACGCCCCGCCCTCCCCGCCCTCTGC
GCCCGTCGCGCCCGCCTCCTTCCTGCTCGCCCTGCGCAACCTGCCCACCC
CGTACTGGCGCGTCTTTTCCATCCAGCTCTGCACCTGGTGCGGCTTCTTC
GCCCTCTTCGTGTACGTCAACGCCTGGGTCGGAAAGAACGTGTATCTGGG
CGACGGCACGGCGCCGGCCGGCAGCGACAAGCGCGCCGTCTTCGACCAAG
GCGTGCGCCTGGGCGGCAAGGGAAACGCCGTCACCGCCGCCGTCACCCTG
GTCTTCTCGCTGGCGCTGCCGGCGCTCGTGCGCCGCTTCGGCAGCATGTC
CATCTACGCAGCGAGCCAGCTCGTCGAGGCCGCCGTGCTCATGGCCGCGC
CGTTCATTCGCGGCAGCACACCTGGTGAGCCGCCGTCGCGCGCGCTCAAG
GCCGTCACCGTCGCGGACATCGGCCTGTTCGGCATCGTGTGGGGAACCAC
CATGGGCGTGCCCTGGACCCTCATCGGAGACGCGCTGGAATCGAAGCCGT
GGTATCGAGACCGCGTCGGTCTGTTTCAGATGATTTTCAACGCCAGCCAA
AGCGGGCCGCAGCTCATCGTCGCGTGCGTCGCTCCCATTATTCTCGCCCT
CTTCAACGACGACCCTTCCGCCGTCATGTTTTTCGGCGGTGTGCTGGCCC
TTGTTGGCGCACTGCTCGTCGTCGTACTTGGCGTCGGCAAACCGGTGTCC
GCCGGAGAAACCTCCAAAGTGCTACTACCGGTTCATTCTCCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2687658..2689202-

>Gvermi2003.t1 ID=Gvermi2003.t1|Name=Gvermi2003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1545bp|location=Sequence derived from alignment at ScGOVlb_1622:2687658..2689202- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCGCTCACCGCCGCCAACGAGGGGCGCGCCCAGTCGCCGCCGCC
GCCCGGCGCGCCGACCGCCGCCGCCGCCGCCGCCGTCGCGCTGCCGCGCT
GGCGTATCATCCTGTGCGCAGTGGCCATGTGCGGCGTCTCCGTCTCGTAC
TCGGCGCAAATCAACCTCGGCACCTCGCAGCTGCTGCTGCTCGGCCTCTC
CGAGCGCGCCGTCTCGCTCGCCTGGATGGCCGGTCCCCTATCCGGCCTCA
TCGTCCAGCCCATCGTGGGCCACTTCTCCGACCGCTGCGCGTCGCCGTTC
GGCCGGCGCCGCCCCTTCCTCGTCGCCGGCGCCGCCCTCACCGCCGCCGC
CCTGCTGCTCTTTGCCAACGCCGCCGCCGCCGCGCGCGCCCTGGGCGCCG
CGCACGCCGCCCTCCCCATCGCCATCTCCGCCTTCTTCCTGCTCGACTTT
TCCGTCCAGGCCGTGCAGGGGCCCCTGCGCGCCCTCGTCACCGAGTTTGT
GCCGCGCCACCAGCGCCACATCGGCAACGCCTACATTGGCGTCTTCACCG
GCCTTGGCAACCTGCTCGGCAGCGCCTTCACCGCCGTCGGCCTCGCCGAC
TATGTCCCCTATTTTGAGCACGACGTGCAGGCCGTCTGTGCCGTCGCCGC
CCTCGTCCTCCTGCTCACCGTCGCCGTCTCGGTGTGCTTCACGCACGACG
CCCCGCTCTCGCTGCGCGAGTACGAGGCCGTCGCCCACGGCTCGAGTGAC
GCCATCGAAATCGCCGCGCAGCCCGACGCCCCGCCCTCCCCGCCCTCTGC
GCCCGTCGCGCCCGCCTCCTTCCTGCTCGCCCTGCGCAACCTGCCCACCC
CGTACTGGCGCGTCTTTTCCATCCAGCTCTGCACCTGGTGCGGCTTCTTC
GCCCTCTTCGTGTACGTCAACGCCTGGGTCGGAAAGAACGTGTATCTGGG
CGACGGCACGGCGCCGGCCGGCAGCGACAAGCGCGCCGTCTTCGACCAAG
GCGTGCGCCTGGGCGGCAAGGGAAACGCCGTCACCGCCGCCGTCACCCTG
GTCTTCTCGCTGGCGCTGCCGGCGCTCGTGCGCCGCTTCGGCAGCATGTC
CATCTACGCAGCGAGCCAGCTCGTCGAGGCCGCCGTGCTCATGGCCGCGC
CGTTCATTCGCGGCAGCACACCTGGTGAGCCGCCGTCGCGCGCGCTCAAG
GCCGTCACCGTCGCGGACATCGGCCTGTTCGGCATCGTGTGGGGAACCAC
CATGGGCGTGCCCTGGACCCTCATCGGAGACGCGCTGGAATCGAAGCCGT
GGTATCGAGACCGCGTCGGTCTGTTTCAGATGATTTTCAACGCCAGCCAA
AGCGGGCCGCAGCTCATCGTCGCGTGCGTCGCTCCCATTATTCTCGCCCT
CTTCAACGACGACCCTTCCGCCGTCATGTTTTTCGGCGGTGTGCTGGCCC
TTGTTGGCGCACTGCTCGTCGTCGTACTTGGCGTCGGCAAACCGGTGTCC
GCCGGAGAAACCTCCAAAGTGCTACTACCGGTTCATTCTCCCTGA
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