Gvermi1998.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1998.t1
Unique NameGvermi1998.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2671528..2673218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1464048.JNZS01000044_gene653
PFAMsHAD_2
Max annot lvl201174|Actinobacteria
Evalue4.82e-35
EggNOG OGsCOG0637@1|root,COG0637@2|Bacteria,2I362@201174|Actinobacteria,4DD2J@85008|Micromonosporales
DescriptionHaloacid dehalogenase-like hydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1998Gvermi1998Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2671528..2673218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1998.t1Gvermi1998.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2671528..2673218 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1998.t1.start1Gvermi1998.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2671528..2671530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1998.t1.CDS1Gvermi1998.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2671528..2672110 +
Gvermi1998.t1.CDS2Gvermi1998.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2672857..2673218 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1998.t1.exon1Gvermi1998.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2671528..2672110 +
Gvermi1998.t1.exon2Gvermi1998.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2672857..2673218 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1998.t1.intron1Gvermi1998.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 2672111..2672856 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1998.t1.stop1Gvermi1998.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2673216..2673218 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1998.t1 ID=Gvermi1998.t1|Name=Gvermi1998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=315bp
MITPSLAVEDAMRHIDSAAAVIFDNDGTLVDSMPVHKTAWQTALAQHGLS
FPEQQYYAMAGMPASEIIPRLAHEQNLPHVSVQAVLAARKKAVADQLQHV
KPVAVVVQLMNYARQKRLPIAVASGSEREDVLNSLRYADISAHHFGAVVT
AEDVTRGKPHPETFLLAAERLGVHPSACIGFEDADKGMQALRSAAGRANA
SSIQLARRYLSREGSTKKTNIEMAKQQAFAFPPAFIPALLFSLVSNSSTP
DASDLSTANQLQRLPFVQQTAPDNSAKIQGRTLPNPDLFKSPDFERMLKE
KAMPGDFQPRDHGR*
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spliced messenger RNA

>Gvermi1998.t1 ID=Gvermi1998.t1|Name=Gvermi1998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=945bp|location=Sequence derived from alignment at ScGOVlb_1622:2671528..2673218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACCCCTTCGCTTGCCGTCGAGGACGCAATGCGCCACATAGACAG
CGCGGCCGCCGTCATATTCGACAACGACGGCACGCTGGTCGATTCTATGC
CCGTCCACAAGACTGCCTGGCAGACAGCTCTCGCACAACACGGCCTGTCG
TTCCCGGAACAGCAGTACTACGCCATGGCCGGCATGCCCGCCTCCGAAAT
TATTCCGCGCCTGGCTCACGAACAGAATTTACCTCACGTAAGCGTACAAG
CCGTTCTCGCCGCTCGAAAGAAAGCCGTGGCGGATCAACTGCAACATGTC
AAGCCCGTGGCCGTCGTTGTGCAACTCATGAACTACGCAAGGCAAAAGCG
CTTGCCGATTGCCGTTGCTAGCGGCAGTGAGCGTGAGGATGTCTTAAACT
CCCTGCGCTATGCTGACATAAGCGCTCACCACTTTGGCGCCGTGGTGACT
GCCGAAGACGTCACCCGTGGAAAACCGCACCCCGAGACATTCCTGTTGGC
TGCGGAGCGCCTTGGCGTGCATCCCTCGGCTTGCATCGGCTTTGAAGACG
CTGACAAGGGCATGCAGGCTCTGCGCAGCGCGGCCGGAAGAGCCAACGCA
TCATCCATTCAGCTTGCTCGAAGATATTTATCAAGAGAAGGATCGACGAA
GAAGACAAACATTGAAATGGCGAAGCAACAAGCATTCGCGTTTCCCCCCG
CCTTCATCCCAGCCTTGCTTTTCTCTTTGGTTTCGAATTCCTCCACCCCG
GACGCTTCTGACCTGTCGACCGCAAACCAGCTGCAGCGCTTGCCTTTCGT
GCAACAGACTGCGCCGGACAATTCTGCTAAAATTCAAGGTCGAACGCTCC
CAAATCCTGACCTGTTCAAAAGCCCCGATTTTGAGCGGATGCTGAAAGAA
AAGGCCATGCCCGGGGACTTTCAACCCAGAGACCACGGAAGATAA
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protein sequence of Gvermi1998.t1

>Gvermi1998.t1 ID=Gvermi1998.t1|Name=Gvermi1998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=315bp
MITPSLAVEDAMRHIDSAAAVIFDNDGTLVDSMPVHKTAWQTALAQHGLS
FPEQQYYAMAGMPASEIIPRLAHEQNLPHVSVQAVLAARKKAVADQLQHV
KPVAVVVQLMNYARQKRLPIAVASGSEREDVLNSLRYADISAHHFGAVVT
AEDVTRGKPHPETFLLAAERLGVHPSACIGFEDADKGMQALRSAAGRANA
SSIQLARRYLSREGSTKKTNIEMAKQQAFAFPPAFIPALLFSLVSNSSTP
DASDLSTANQLQRLPFVQQTAPDNSAKIQGRTLPNPDLFKSPDFERMLKE
KAMPGDFQPRDHGR*
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mRNA from alignment at ScGOVlb_1622:2671528..2673218+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1998.t1 ID=Gvermi1998.t1|Name=Gvermi1998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1691bp|location=Sequence derived from alignment at ScGOVlb_1622:2671528..2673218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCACCCCTTCGCTTGCCGTCGAGGACGCAATGCGCCACATAGACAG
CGCGGCCGCCGTCATATTCGACAACGACGGCACGCTGGTCGATTCTATGC
CCGTCCACAAGACTGCCTGGCAGACAGCTCTCGCACAACACGGCCTGTCG
TTCCCGGAACAGCAGTACTACGCCATGGCCGGCATGCCCGCCTCCGAAAT
TATTCCGCGCCTGGCTCACGAACAGAATTTACCTCACGTAAGCGTACAAG
CCGTTCTCGCCGCTCGAAAGAAAGCCGTGGCGGATCAACTGCAACATGTC
AAGCCCGTGGCCGTCGTTGTGCAACTCATGAACTACGCAAGGCAAAAGCG
CTTGCCGATTGCCGTTGCTAGCGGCAGTGAGCGTGAGGATGTCTTAAACT
CCCTGCGCTATGCTGACATAAGCGCTCACCACTTTGGCGCCGTGGTGACT
GCCGAAGACGTCACCCGTGGAAAACCGCACCCCGAGACATTCCTGTTGGC
TGCGGAGCGCCTTGGCGTGCATCCCTCGGCTTGCATCGGCTTTGAAGACG
CTGACAAGGGCATGCAGGCTCTGCGCAGCGCGGGTATGCATGCCGTGGAC
GTGAGAACCATTCACGGATACCCGCTTCCTGCTTGTCTTCGAGCCCCCGT
GCCATGATACGCCCCGTTCGCCAACCACAGCACGACGGCTTTCATGCGGT
ACATACCCCCTTGCCCTTGTCCATAGTCCCCATTTTCTGTGTTATACAAA
TACATGATTTCTGTATATTAAAACCAAAACATGCTTCTACGTCGGGGTGA
GCGAGCAGTTTCTCAACAAGTTTTAAAAACAATTGGTGCTCTACACCCGT
GGCGCGCTCACTCGACTCCCTACACTTTTCTCTCTCCAAGGAATCGTACA
CCTTCTTGGTTCTCTCAGCGTCATGCCAACTTCGCAATCGGTCTTTCTCA
CATCGTCTATTGATTGTTATTCTGTGATCCTCAATGTGTTCTCTTTTGGG
GCAGCATACGAAGATTGAGCCGAACGCATTCGGTGCTGAGCCGTGCTATG
AAATGTTTGCGTTGTCTGCAGTGCTTATAAGCTCTTGCTCTTTTGATGTC
GTCAAGCAGCATAGGACCGTGCACCCGAGGCTACCCGTCAGTGGTGGTGT
ACGTTGCAGTGTGAGTGTGACAATGATTTTCCATAATTTTCTGCGTATGG
AATCGGGCTGTTCTGGGAGATTCCATGTCATGTCATGTGCACTTCTCTCA
GGCCCATCCAACAGAAGAGCCGTCCGGTTTAATCTACTGAACACATGCTC
TTGAATACTTCACTTTGGTACTGAGTGAGCCGGAAGAGCCAACGCATCAT
CCATTCAGCTTGCTCGAAGATATTTATCAAGAGAAGGATCGACGAAGAAG
ACAAACATTGAAATGGCGAAGCAACAAGCATTCGCGTTTCCCCCCGCCTT
CATCCCAGCCTTGCTTTTCTCTTTGGTTTCGAATTCCTCCACCCCGGACG
CTTCTGACCTGTCGACCGCAAACCAGCTGCAGCGCTTGCCTTTCGTGCAA
CAGACTGCGCCGGACAATTCTGCTAAAATTCAAGGTCGAACGCTCCCAAA
TCCTGACCTGTTCAAAAGCCCCGATTTTGAGCGGATGCTGAAAGAAAAGG
CCATGCCCGGGGACTTTCAACCCAGAGACCACGGAAGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2671528..2673218+

>Gvermi1998.t1 ID=Gvermi1998.t1|Name=Gvermi1998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=945bp|location=Sequence derived from alignment at ScGOVlb_1622:2671528..2673218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCACCCCTTCGCTTGCCGTCGAGGACGCAATGCGCCACATAGACAG
CGCGGCCGCCGTCATATTCGACAACGACGGCACGCTGGTCGATTCTATGC
CCGTCCACAAGACTGCCTGGCAGACAGCTCTCGCACAACACGGCCTGTCG
TTCCCGGAACAGCAGTACTACGCCATGGCCGGCATGCCCGCCTCCGAAAT
TATTCCGCGCCTGGCTCACGAACAGAATTTACCTCACGTAAGCGTACAAG
CCGTTCTCGCCGCTCGAAAGAAAGCCGTGGCGGATCAACTGCAACATGTC
AAGCCCGTGGCCGTCGTTGTGCAACTCATGAACTACGCAAGGCAAAAGCG
CTTGCCGATTGCCGTTGCTAGCGGCAGTGAGCGTGAGGATGTCTTAAACT
CCCTGCGCTATGCTGACATAAGCGCTCACCACTTTGGCGCCGTGGTGACT
GCCGAAGACGTCACCCGTGGAAAACCGCACCCCGAGACATTCCTGTTGGC
TGCGGAGCGCCTTGGCGTGCATCCCTCGGCTTGCATCGGCTTTGAAGACG
CTGACAAGGGCATGCAGGCTCTGCGCAGCGCGGCCGGAAGAGCCAACGCA
TCATCCATTCAGCTTGCTCGAAGATATTTATCAAGAGAAGGATCGACGAA
GAAGACAAACATTGAAATGGCGAAGCAACAAGCATTCGCGTTTCCCCCCG
CCTTCATCCCAGCCTTGCTTTTCTCTTTGGTTTCGAATTCCTCCACCCCG
GACGCTTCTGACCTGTCGACCGCAAACCAGCTGCAGCGCTTGCCTTTCGT
GCAACAGACTGCGCCGGACAATTCTGCTAAAATTCAAGGTCGAACGCTCC
CAAATCCTGACCTGTTCAAAAGCCCCGATTTTGAGCGGATGCTGAAAGAA
AAGGCCATGCCCGGGGACTTTCAACCCAGAGACCACGGAAGATAA
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