Gvermi1996.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi1996.t1
Unique Name	Gvermi1996.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1622	contig	ScGOVlb_1622:2661927..2663063 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1301098.PKB_4051
PFAMs	Str_synth
Max annot lvl	1236\|Gammaproteobacteria
Evalue	4.38e-38
EggNOG OGs	COG3386@1\|root,COG3386@2\|Bacteria,1MX7V@1224\|Proteobacteria,1RMQK@1236\|Gammaproteobacteria
Description	gluconolactonase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi1996	Gvermi1996	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1622 2661927..2663063 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1996.t1.start1	Gvermi1996.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1622 2661927..2661929 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1996.t1.CDS1	Gvermi1996.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1622 2661927..2663063 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1996.t1.exon1	Gvermi1996.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1622 2661927..2663063 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1996.t1.stop1	Gvermi1996.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1622 2663061..2663063 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1996.t1	Gvermi1996.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1622 2661927..2663063 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1622:2661927..2663063+
coding sequence from alignment at ScGOVlb_1622:2661927..2663063+

mRNA sequence

>Gvermi1996.t1 ID=Gvermi1996.t1|Name=Gvermi1996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=379bp
MLVFVLSVLCIVLWLISKPLHPLPLFGENPPSLSDVPYDEGIWTENNFLS
SATKLPHNPPLVSPETAFVRESDCTVFVTDARGVVWTVAQNHSAYERHAV
TGGTLLGGAVDPSSGALYICDSSRGLLRVPPDPSKAHTEIVSAAVSSDPF
DEITYCDDVHVAADGKVYFTSATKLFPSREMHSRYSNTYGTYIADVLYGS
PSGRVFVYDPETMRTTQLADSMAFANGIAVHPSGEYALVAESSTMKITKL
WLRGDRCGVKKTMLELPGFPDGISYDAAGKQFWITLYGPAVFTSRLVPKL
PVFIRRFAVNLPPKLLVPRKPASIVAAIDENTGKVTAQLGDPAKLHGMIA
SAHRCGDYLWLGILHGKTISRLRLRDVM*

spliced messenger RNA

>Gvermi1996.t1 ID=Gvermi1996.t1|Name=Gvermi1996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at ScGOVlb_1622:2661927..2663063+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTCTTCGTGCTTTCGGTGCTGTGCATAGTGCTATGGCTCATCAG
CAAGCCGCTGCATCCACTTCCTCTCTTTGGCGAGAATCCGCCCAGTCTGT
CTGATGTCCCATACGACGAAGGAATCTGGACGGAGAACAATTTTCTGTCA
TCTGCCACTAAATTGCCCCATAATCCACCCCTCGTCTCGCCGGAAACTGC
CTTCGTTCGCGAGTCTGACTGCACGGTTTTTGTCACCGATGCACGCGGCG
TCGTCTGGACCGTGGCTCAGAACCATTCAGCCTACGAGCGCCATGCAGTC
ACCGGTGGCACCTTGCTAGGCGGCGCCGTCGATCCTTCATCTGGCGCGCT
CTACATCTGTGATTCCTCGCGCGGGCTTCTTCGTGTGCCGCCGGACCCGA
GCAAGGCGCACACTGAGATTGTGTCTGCGGCGGTGTCTTCGGATCCATTC
GATGAGATCACTTACTGCGATGACGTGCACGTGGCTGCAGATGGAAAGGT
TTACTTCACGTCTGCCACCAAATTGTTCCCATCACGGGAAATGCACAGTC
GGTATTCAAACACCTACGGAACATATATCGCCGATGTGCTGTATGGGTCT
CCTTCGGGTCGCGTGTTCGTGTACGACCCCGAGACAATGCGAACCACTCA
GCTTGCTGACAGCATGGCCTTTGCCAACGGAATTGCCGTGCATCCCAGCG
GAGAGTACGCTCTAGTCGCCGAGTCTTCCACCATGAAAATTACCAAACTT
TGGCTCCGAGGCGATAGATGTGGCGTGAAAAAAACCATGCTAGAACTGCC
TGGTTTTCCAGATGGCATATCATACGACGCTGCCGGAAAGCAATTCTGGA
TCACTCTGTATGGGCCAGCAGTTTTTACCTCCCGCCTCGTGCCAAAATTA
CCTGTTTTTATCCGCCGATTTGCCGTGAATCTTCCTCCAAAGCTTCTCGT
GCCGAGGAAGCCGGCCAGCATAGTGGCGGCCATTGATGAGAACACTGGTA
AAGTGACTGCGCAGCTCGGAGATCCGGCAAAGCTACACGGCATGATTGCT
TCGGCACATCGATGTGGAGACTATCTGTGGCTTGGCATTCTTCATGGCAA
AACGATTTCTCGCTTACGTTTACGCGACGTGATGTAG

protein sequence of Gvermi1996.t1

>Gvermi1996.t1 ID=Gvermi1996.t1|Name=Gvermi1996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=379bp
MLVFVLSVLCIVLWLISKPLHPLPLFGENPPSLSDVPYDEGIWTENNFLS
SATKLPHNPPLVSPETAFVRESDCTVFVTDARGVVWTVAQNHSAYERHAV
TGGTLLGGAVDPSSGALYICDSSRGLLRVPPDPSKAHTEIVSAAVSSDPF
DEITYCDDVHVAADGKVYFTSATKLFPSREMHSRYSNTYGTYIADVLYGS
PSGRVFVYDPETMRTTQLADSMAFANGIAVHPSGEYALVAESSTMKITKL
WLRGDRCGVKKTMLELPGFPDGISYDAAGKQFWITLYGPAVFTSRLVPKL
PVFIRRFAVNLPPKLLVPRKPASIVAAIDENTGKVTAQLGDPAKLHGMIA
SAHRCGDYLWLGILHGKTISRLRLRDVM*

mRNA from alignment at ScGOVlb_1622:2661927..2663063+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi1996.t1 ID=Gvermi1996.t1|Name=Gvermi1996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at ScGOVlb_1622:2661927..2663063+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGTCTTCGTGCTTTCGGTGCTGTGCATAGTGCTATGGCTCATCAG
CAAGCCGCTGCATCCACTTCCTCTCTTTGGCGAGAATCCGCCCAGTCTGT
CTGATGTCCCATACGACGAAGGAATCTGGACGGAGAACAATTTTCTGTCA
TCTGCCACTAAATTGCCCCATAATCCACCCCTCGTCTCGCCGGAAACTGC
CTTCGTTCGCGAGTCTGACTGCACGGTTTTTGTCACCGATGCACGCGGCG
TCGTCTGGACCGTGGCTCAGAACCATTCAGCCTACGAGCGCCATGCAGTC
ACCGGTGGCACCTTGCTAGGCGGCGCCGTCGATCCTTCATCTGGCGCGCT
CTACATCTGTGATTCCTCGCGCGGGCTTCTTCGTGTGCCGCCGGACCCGA
GCAAGGCGCACACTGAGATTGTGTCTGCGGCGGTGTCTTCGGATCCATTC
GATGAGATCACTTACTGCGATGACGTGCACGTGGCTGCAGATGGAAAGGT
TTACTTCACGTCTGCCACCAAATTGTTCCCATCACGGGAAATGCACAGTC
GGTATTCAAACACCTACGGAACATATATCGCCGATGTGCTGTATGGGTCT
CCTTCGGGTCGCGTGTTCGTGTACGACCCCGAGACAATGCGAACCACTCA
GCTTGCTGACAGCATGGCCTTTGCCAACGGAATTGCCGTGCATCCCAGCG
GAGAGTACGCTCTAGTCGCCGAGTCTTCCACCATGAAAATTACCAAACTT
TGGCTCCGAGGCGATAGATGTGGCGTGAAAAAAACCATGCTAGAACTGCC
TGGTTTTCCAGATGGCATATCATACGACGCTGCCGGAAAGCAATTCTGGA
TCACTCTGTATGGGCCAGCAGTTTTTACCTCCCGCCTCGTGCCAAAATTA
CCTGTTTTTATCCGCCGATTTGCCGTGAATCTTCCTCCAAAGCTTCTCGT
GCCGAGGAAGCCGGCCAGCATAGTGGCGGCCATTGATGAGAACACTGGTA
AAGTGACTGCGCAGCTCGGAGATCCGGCAAAGCTACACGGCATGATTGCT
TCGGCACATCGATGTGGAGACTATCTGTGGCTTGGCATTCTTCATGGCAA
AACGATTTCTCGCTTACGTTTACGCGACGTGATGTAG

Coding sequence (CDS) from alignment at ScGOVlb_1622:2661927..2663063+

>Gvermi1996.t1 ID=Gvermi1996.t1|Name=Gvermi1996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1137bp|location=Sequence derived from alignment at ScGOVlb_1622:2661927..2663063+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGTCTTCGTGCTTTCGGTGCTGTGCATAGTGCTATGGCTCATCAG
CAAGCCGCTGCATCCACTTCCTCTCTTTGGCGAGAATCCGCCCAGTCTGT
CTGATGTCCCATACGACGAAGGAATCTGGACGGAGAACAATTTTCTGTCA
TCTGCCACTAAATTGCCCCATAATCCACCCCTCGTCTCGCCGGAAACTGC
CTTCGTTCGCGAGTCTGACTGCACGGTTTTTGTCACCGATGCACGCGGCG
TCGTCTGGACCGTGGCTCAGAACCATTCAGCCTACGAGCGCCATGCAGTC
ACCGGTGGCACCTTGCTAGGCGGCGCCGTCGATCCTTCATCTGGCGCGCT
CTACATCTGTGATTCCTCGCGCGGGCTTCTTCGTGTGCCGCCGGACCCGA
GCAAGGCGCACACTGAGATTGTGTCTGCGGCGGTGTCTTCGGATCCATTC
GATGAGATCACTTACTGCGATGACGTGCACGTGGCTGCAGATGGAAAGGT
TTACTTCACGTCTGCCACCAAATTGTTCCCATCACGGGAAATGCACAGTC
GGTATTCAAACACCTACGGAACATATATCGCCGATGTGCTGTATGGGTCT
CCTTCGGGTCGCGTGTTCGTGTACGACCCCGAGACAATGCGAACCACTCA
GCTTGCTGACAGCATGGCCTTTGCCAACGGAATTGCCGTGCATCCCAGCG
GAGAGTACGCTCTAGTCGCCGAGTCTTCCACCATGAAAATTACCAAACTT
TGGCTCCGAGGCGATAGATGTGGCGTGAAAAAAACCATGCTAGAACTGCC
TGGTTTTCCAGATGGCATATCATACGACGCTGCCGGAAAGCAATTCTGGA
TCACTCTGTATGGGCCAGCAGTTTTTACCTCCCGCCTCGTGCCAAAATTA
CCTGTTTTTATCCGCCGATTTGCCGTGAATCTTCCTCCAAAGCTTCTCGT
GCCGAGGAAGCCGGCCAGCATAGTGGCGGCCATTGATGAGAACACTGGTA
AAGTGACTGCGCAGCTCGGAGATCCGGCAAAGCTACACGGCATGATTGCT
TCGGCACATCGATGTGGAGACTATCTGTGGCTTGGCATTCTTCATGGCAA
AACGATTTCTCGCTTACGTTTACGCGACGTGATGTAG