Gvermi1978.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1978.t1
Unique NameGvermi1978.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length581
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2596757..2598499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN325CT
Preferred nameABCB1
PFAMsABC_membrane,ABC_tran
Max annot lvl2759|Eukaryota
KEGG koko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
Evalue1.99e-154
EggNOG OGsCOG1132@1|root,KOG0058@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1978Gvermi1978Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2596757..2598499 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1978.t1.stop1Gvermi1978.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2596757..2596759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1978.t1.CDS1Gvermi1978.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2596757..2598499 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1978.t1.exon1Gvermi1978.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2596757..2598499 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1978.t1.start1Gvermi1978.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2598497..2598499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1978.t1Gvermi1978.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2596757..2598499 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1978.t1 ID=Gvermi1978.t1|Name=Gvermi1978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=581bp
MMLFPFALGRVVDAVTGSGSTDLDTLVLAMGGVFTVSAIASATRVAAMSL
AGSRISRQLRISLFHSMLRQETAFFDRRQSGELVNRLSSDVPLVSRTLTQ
NLAKILRNGVTTASSLSFILYLSPKLSLVTICSIPPIMGFAFLFGRTARK
LSRQLVDALAAATQVAAERTSAIRTVRTFGAEGFESNKYAKQVDETYGLA
KKVALADALYAGSVQLSAQMSLVGVLWFGGRMVVNPLDPMTIGTLTSFAI
YAVNLGVSVSAMGTSYGQLLRALGAGYRIFEILDRAPEGKSSTIADQSLP
EDSFDQPSPQKAISNMNGLQPGYDATVRFNNVHFSYPTHPDTAILRGVDL
EIRPGEILAIAGGSGSGKSTLGALLSRLYEPTSGEVQLGNIPIADLDTSW
LRNQIAVVSQEPVLFDGTVAENIGYALPERLSMEEVQDAARAAASHDMIM
TLPQQYDTRVGERGSALSGGQRARTALSRALARRPRVLVLDEHSAALDAE
SERYVGEALTNAATDLNMVVLTIAHRTSSLRRADRVAVLVDGRVAELDSY
ETLMRNPNSFLRRMLVPEIPGKEGERPAIL*
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spliced messenger RNA

>Gvermi1978.t1 ID=Gvermi1978.t1|Name=Gvermi1978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1743bp|location=Sequence derived from alignment at ScGOVlb_1622:2596757..2598499- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTGTTTCCGTTCGCTCTGGGCAGAGTTGTGGATGCCGTTACCGG
CTCGGGATCCACAGACCTAGACACCTTGGTGCTTGCCATGGGGGGCGTGT
TCACTGTCTCTGCAATTGCATCAGCCACTCGAGTAGCAGCCATGTCTCTC
GCTGGCTCCAGAATTTCTCGCCAGCTCCGTATCTCACTGTTTCATTCCAT
GTTGCGGCAAGAAACTGCCTTCTTTGACAGGCGCCAATCAGGCGAGCTGG
TCAATCGCCTGTCCTCGGATGTCCCGCTCGTATCGAGAACTCTAACACAA
AACTTGGCCAAAATTCTCAGAAACGGGGTGACTACGGCGTCGTCGCTGTC
GTTCATTCTGTATTTGTCGCCAAAACTTTCCCTTGTAACTATTTGTTCCA
TCCCGCCAATTATGGGCTTTGCCTTCCTGTTTGGTCGTACTGCTCGGAAG
CTATCTCGCCAGCTTGTCGACGCGCTCGCAGCCGCTACACAGGTCGCAGC
GGAACGTACGAGCGCGATTCGAACGGTCCGCACGTTCGGTGCTGAAGGGT
TTGAGTCTAACAAATATGCAAAGCAAGTAGATGAGACGTATGGTCTTGCA
AAGAAAGTTGCATTGGCGGATGCACTATACGCAGGTTCAGTCCAGCTGTC
CGCTCAAATGTCTCTCGTGGGTGTTTTATGGTTTGGAGGGCGAATGGTTG
TCAACCCTCTTGACCCGATGACCATTGGAACCCTAACGTCTTTTGCTATA
TACGCCGTCAACCTTGGAGTTTCTGTTTCAGCGATGGGCACATCATATGG
TCAGCTCTTGCGGGCCCTCGGTGCTGGTTACCGTATATTTGAAATCCTCG
ACCGAGCACCGGAAGGTAAATCTTCAACTATTGCGGATCAGAGCCTTCCT
GAAGATAGTTTTGATCAACCGTCCCCACAGAAAGCTATATCAAACATGAA
CGGTTTGCAACCGGGATATGATGCCACCGTCCGTTTTAACAATGTGCATT
TTTCATATCCAACTCATCCAGACACAGCGATTCTTAGAGGAGTTGATCTT
GAAATCCGCCCTGGAGAAATACTTGCAATAGCTGGAGGGAGCGGGTCTGG
AAAGAGTACGTTAGGCGCCTTGCTTTCGCGTCTATACGAACCTACCTCGG
GAGAGGTTCAACTTGGGAATATTCCCATCGCAGATCTCGACACCTCCTGG
CTTCGGAACCAGATTGCAGTTGTTTCTCAAGAGCCAGTATTGTTTGACGG
TACTGTTGCGGAGAACATCGGATATGCGTTACCGGAAAGATTAAGTATGG
AAGAGGTGCAAGATGCAGCGAGGGCAGCTGCTAGCCACGACATGATCATG
ACCCTTCCGCAGCAGTATGATACGAGAGTGGGCGAACGGGGATCAGCTCT
GTCTGGCGGTCAGCGCGCTCGAACTGCGCTTTCTCGTGCCCTGGCACGGC
GGCCTCGGGTACTCGTGTTAGACGAACACAGTGCTGCACTGGACGCAGAA
TCTGAGCGTTACGTGGGCGAGGCTTTAACGAACGCTGCAACAGACCTTAA
CATGGTCGTTCTAACTATCGCACATCGAACCAGTTCTTTGCGTCGGGCAG
ACAGGGTTGCTGTACTTGTAGACGGGAGAGTCGCCGAGTTGGACTCCTAT
GAAACACTTATGAGGAATCCGAACTCCTTTCTCCGACGAATGCTGGTGCC
CGAGATCCCCGGCAAGGAAGGCGAAAGGCCGGCGATACTATAA
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protein sequence of Gvermi1978.t1

>Gvermi1978.t1 ID=Gvermi1978.t1|Name=Gvermi1978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=581bp
MMLFPFALGRVVDAVTGSGSTDLDTLVLAMGGVFTVSAIASATRVAAMSL
AGSRISRQLRISLFHSMLRQETAFFDRRQSGELVNRLSSDVPLVSRTLTQ
NLAKILRNGVTTASSLSFILYLSPKLSLVTICSIPPIMGFAFLFGRTARK
LSRQLVDALAAATQVAAERTSAIRTVRTFGAEGFESNKYAKQVDETYGLA
KKVALADALYAGSVQLSAQMSLVGVLWFGGRMVVNPLDPMTIGTLTSFAI
YAVNLGVSVSAMGTSYGQLLRALGAGYRIFEILDRAPEGKSSTIADQSLP
EDSFDQPSPQKAISNMNGLQPGYDATVRFNNVHFSYPTHPDTAILRGVDL
EIRPGEILAIAGGSGSGKSTLGALLSRLYEPTSGEVQLGNIPIADLDTSW
LRNQIAVVSQEPVLFDGTVAENIGYALPERLSMEEVQDAARAAASHDMIM
TLPQQYDTRVGERGSALSGGQRARTALSRALARRPRVLVLDEHSAALDAE
SERYVGEALTNAATDLNMVVLTIAHRTSSLRRADRVAVLVDGRVAELDSY
ETLMRNPNSFLRRMLVPEIPGKEGERPAIL*
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mRNA from alignment at ScGOVlb_1622:2596757..2598499-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1978.t1 ID=Gvermi1978.t1|Name=Gvermi1978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1743bp|location=Sequence derived from alignment at ScGOVlb_1622:2596757..2598499- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTGTTTCCGTTCGCTCTGGGCAGAGTTGTGGATGCCGTTACCGG
CTCGGGATCCACAGACCTAGACACCTTGGTGCTTGCCATGGGGGGCGTGT
TCACTGTCTCTGCAATTGCATCAGCCACTCGAGTAGCAGCCATGTCTCTC
GCTGGCTCCAGAATTTCTCGCCAGCTCCGTATCTCACTGTTTCATTCCAT
GTTGCGGCAAGAAACTGCCTTCTTTGACAGGCGCCAATCAGGCGAGCTGG
TCAATCGCCTGTCCTCGGATGTCCCGCTCGTATCGAGAACTCTAACACAA
AACTTGGCCAAAATTCTCAGAAACGGGGTGACTACGGCGTCGTCGCTGTC
GTTCATTCTGTATTTGTCGCCAAAACTTTCCCTTGTAACTATTTGTTCCA
TCCCGCCAATTATGGGCTTTGCCTTCCTGTTTGGTCGTACTGCTCGGAAG
CTATCTCGCCAGCTTGTCGACGCGCTCGCAGCCGCTACACAGGTCGCAGC
GGAACGTACGAGCGCGATTCGAACGGTCCGCACGTTCGGTGCTGAAGGGT
TTGAGTCTAACAAATATGCAAAGCAAGTAGATGAGACGTATGGTCTTGCA
AAGAAAGTTGCATTGGCGGATGCACTATACGCAGGTTCAGTCCAGCTGTC
CGCTCAAATGTCTCTCGTGGGTGTTTTATGGTTTGGAGGGCGAATGGTTG
TCAACCCTCTTGACCCGATGACCATTGGAACCCTAACGTCTTTTGCTATA
TACGCCGTCAACCTTGGAGTTTCTGTTTCAGCGATGGGCACATCATATGG
TCAGCTCTTGCGGGCCCTCGGTGCTGGTTACCGTATATTTGAAATCCTCG
ACCGAGCACCGGAAGGTAAATCTTCAACTATTGCGGATCAGAGCCTTCCT
GAAGATAGTTTTGATCAACCGTCCCCACAGAAAGCTATATCAAACATGAA
CGGTTTGCAACCGGGATATGATGCCACCGTCCGTTTTAACAATGTGCATT
TTTCATATCCAACTCATCCAGACACAGCGATTCTTAGAGGAGTTGATCTT
GAAATCCGCCCTGGAGAAATACTTGCAATAGCTGGAGGGAGCGGGTCTGG
AAAGAGTACGTTAGGCGCCTTGCTTTCGCGTCTATACGAACCTACCTCGG
GAGAGGTTCAACTTGGGAATATTCCCATCGCAGATCTCGACACCTCCTGG
CTTCGGAACCAGATTGCAGTTGTTTCTCAAGAGCCAGTATTGTTTGACGG
TACTGTTGCGGAGAACATCGGATATGCGTTACCGGAAAGATTAAGTATGG
AAGAGGTGCAAGATGCAGCGAGGGCAGCTGCTAGCCACGACATGATCATG
ACCCTTCCGCAGCAGTATGATACGAGAGTGGGCGAACGGGGATCAGCTCT
GTCTGGCGGTCAGCGCGCTCGAACTGCGCTTTCTCGTGCCCTGGCACGGC
GGCCTCGGGTACTCGTGTTAGACGAACACAGTGCTGCACTGGACGCAGAA
TCTGAGCGTTACGTGGGCGAGGCTTTAACGAACGCTGCAACAGACCTTAA
CATGGTCGTTCTAACTATCGCACATCGAACCAGTTCTTTGCGTCGGGCAG
ACAGGGTTGCTGTACTTGTAGACGGGAGAGTCGCCGAGTTGGACTCCTAT
GAAACACTTATGAGGAATCCGAACTCCTTTCTCCGACGAATGCTGGTGCC
CGAGATCCCCGGCAAGGAAGGCGAAAGGCCGGCGATACTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2596757..2598499-

>Gvermi1978.t1 ID=Gvermi1978.t1|Name=Gvermi1978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1743bp|location=Sequence derived from alignment at ScGOVlb_1622:2596757..2598499- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTGTTTCCGTTCGCTCTGGGCAGAGTTGTGGATGCCGTTACCGG
CTCGGGATCCACAGACCTAGACACCTTGGTGCTTGCCATGGGGGGCGTGT
TCACTGTCTCTGCAATTGCATCAGCCACTCGAGTAGCAGCCATGTCTCTC
GCTGGCTCCAGAATTTCTCGCCAGCTCCGTATCTCACTGTTTCATTCCAT
GTTGCGGCAAGAAACTGCCTTCTTTGACAGGCGCCAATCAGGCGAGCTGG
TCAATCGCCTGTCCTCGGATGTCCCGCTCGTATCGAGAACTCTAACACAA
AACTTGGCCAAAATTCTCAGAAACGGGGTGACTACGGCGTCGTCGCTGTC
GTTCATTCTGTATTTGTCGCCAAAACTTTCCCTTGTAACTATTTGTTCCA
TCCCGCCAATTATGGGCTTTGCCTTCCTGTTTGGTCGTACTGCTCGGAAG
CTATCTCGCCAGCTTGTCGACGCGCTCGCAGCCGCTACACAGGTCGCAGC
GGAACGTACGAGCGCGATTCGAACGGTCCGCACGTTCGGTGCTGAAGGGT
TTGAGTCTAACAAATATGCAAAGCAAGTAGATGAGACGTATGGTCTTGCA
AAGAAAGTTGCATTGGCGGATGCACTATACGCAGGTTCAGTCCAGCTGTC
CGCTCAAATGTCTCTCGTGGGTGTTTTATGGTTTGGAGGGCGAATGGTTG
TCAACCCTCTTGACCCGATGACCATTGGAACCCTAACGTCTTTTGCTATA
TACGCCGTCAACCTTGGAGTTTCTGTTTCAGCGATGGGCACATCATATGG
TCAGCTCTTGCGGGCCCTCGGTGCTGGTTACCGTATATTTGAAATCCTCG
ACCGAGCACCGGAAGGTAAATCTTCAACTATTGCGGATCAGAGCCTTCCT
GAAGATAGTTTTGATCAACCGTCCCCACAGAAAGCTATATCAAACATGAA
CGGTTTGCAACCGGGATATGATGCCACCGTCCGTTTTAACAATGTGCATT
TTTCATATCCAACTCATCCAGACACAGCGATTCTTAGAGGAGTTGATCTT
GAAATCCGCCCTGGAGAAATACTTGCAATAGCTGGAGGGAGCGGGTCTGG
AAAGAGTACGTTAGGCGCCTTGCTTTCGCGTCTATACGAACCTACCTCGG
GAGAGGTTCAACTTGGGAATATTCCCATCGCAGATCTCGACACCTCCTGG
CTTCGGAACCAGATTGCAGTTGTTTCTCAAGAGCCAGTATTGTTTGACGG
TACTGTTGCGGAGAACATCGGATATGCGTTACCGGAAAGATTAAGTATGG
AAGAGGTGCAAGATGCAGCGAGGGCAGCTGCTAGCCACGACATGATCATG
ACCCTTCCGCAGCAGTATGATACGAGAGTGGGCGAACGGGGATCAGCTCT
GTCTGGCGGTCAGCGCGCTCGAACTGCGCTTTCTCGTGCCCTGGCACGGC
GGCCTCGGGTACTCGTGTTAGACGAACACAGTGCTGCACTGGACGCAGAA
TCTGAGCGTTACGTGGGCGAGGCTTTAACGAACGCTGCAACAGACCTTAA
CATGGTCGTTCTAACTATCGCACATCGAACCAGTTCTTTGCGTCGGGCAG
ACAGGGTTGCTGTACTTGTAGACGGGAGAGTCGCCGAGTTGGACTCCTAT
GAAACACTTATGAGGAATCCGAACTCCTTTCTCCGACGAATGCTGGTGCC
CGAGATCCCCGGCAAGGAAGGCGAAAGGCCGGCGATACTATAA
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