Gvermi1977.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1977.t1
Unique NameGvermi1977.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2594979..2596520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1977Gvermi1977Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2594979..2596520 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1977.t1.start1Gvermi1977.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2594979..2594981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1977.t1.CDS1Gvermi1977.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2594979..2596520 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1977.t1.exon1Gvermi1977.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2594979..2596520 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1977.t1.stop1Gvermi1977.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2596518..2596520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1977.t1Gvermi1977.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2594979..2596520 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1977.t1 ID=Gvermi1977.t1|Name=Gvermi1977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=514bp
MSADESAYKSDDNLPQVFRLRSQGTFLAKSSDFTRDAAILHTTEIEVDIQ
GMHDGRLAGREGSAGVGFVSAKTRLDRIFQKDFQTRGSSSKPPPPPPPPP
PPPAVQSKAKDSSNSESGKEKSTLFTEADQSSASKKTDANSSGDRPPTNI
VAPPPIEGMYFRSPTRHVKLIKTRLSDLPAIVQDQEPQIRGGVAVYRVSD
DVNRAKYGAMVEINAVDYVNRLKGTVRDLQRQLSVVQGILEQEREKGRQT
NKNLRGSIRMGTFMGRRSKDPENRSSDKKRSLKGRNSSNASATTSNTSSA
RGSPNSSISEHKIPGVRARPNPRAVNFPRGFGFHPERFRDSKPQRAEQLD
NTIVPTKTDEDVFIREDCADSNDETVSHAVKDNSKNANTSVPEDASKIIL
PGDDVNQTQSSDPNASTDYTRTFHPRKPLQQDRSAAPMPVVEARRARRGR
AGRTKSFSEVPTDEVRKEYSYDFHQEKVSRAMSMHRESNAEPPQPPPASK
KSRGVRRLFGLKS*
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spliced messenger RNA

>Gvermi1977.t1 ID=Gvermi1977.t1|Name=Gvermi1977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_1622:2594979..2596520+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTGATGAGAGCGCATACAAGAGCGATGATAATCTCCCACAGGT
GTTCAGACTGCGCAGCCAAGGCACCTTCCTTGCGAAAAGCTCTGATTTTA
CACGTGACGCCGCGATTCTCCACACCACCGAGATTGAAGTCGACATTCAA
GGAATGCACGACGGCCGTTTGGCGGGACGAGAGGGTTCCGCAGGAGTCGG
GTTCGTTTCAGCAAAGACAAGACTGGATCGGATATTTCAAAAAGACTTTC
AGACGAGAGGGTCGTCCTCTAAGccgccaccgccaccaccgccaccaccg
ccaccccccgcAGTTCAGTCGAAAGCCAAAGATTCGTCGAATTCTGAGTC
AGGCAAGGAGAAAAGCACCCTTTTCACCGAAGCAGACCAATCTTCTGCTA
GTAAGAAAACAGATGCGAATAGTAGCGGCGACAGACCCCCAACAAATATT
GTTGCCCCGCCCCCCATCGAGGGCATGTACTTCCGTTCTCCGACGAGGCA
CGTAAAACTTATCAAGACCAGGCTTTCAGACCTGCCTGCAATTGTTCAAG
ATCAGGAACCTCAAATTCGCGGTGGAGTTGCTGTGTACAGGGTCTCTGAC
GACGTGAACCGTGCAAAGTACGGTGCGATGGTCGAGATAAACGCAGTTGA
CTACGTTAATCGGCTAAAAGGCACCGTTCGTGATCTTCAGCGTCAATTGA
GCGTAGTCCAGGGAATTTTGGAACAAGAGAGAGAGAAGGGGCGCCAGACG
AACAAAAATTTGAGAGGCTCAATCCGTATGGGCACATTTATGGGAAGAAG
GTCAAAGGATCCCGAGAACAGGTCCTCAGACAAGAAGCGCTCACTAAAGG
GTAGGAATAGTTCCAATGCCAGTGCAACTACAAGCAATACATCTTCTGCA
AGGGGCTCTCCTAATTCAAGCATATCTGAACACAAGATCCCCGGCGTCCG
TGCAAGGCCAAACCCCCGTGCCGTTAACTTTCCGCGTGGGTTTGGATTTC
ATCCGGAACGGTTCAGAGATTCCAAACCACAGCGAGCAGAACAACTCGAC
AACACAATAGTTCCAACCAAGACAGATGAAGATGTATTTATCAGGGAAGA
CTGCGCTGATTCGAACGATGAAACGGTTTCACATGCAGTCAAAGATAATT
CAAAGAATGCCAATACGAGCGTTCCTGAAGACGCAAGTAAGATTATACTT
CCTGGTGATGACGTCAATCAAACGCAATCCTCAGACCCCAATGCATCTAC
TGATTACACGAGAACCTTCCATCCAAGGAAACCGCTTCAACAAGATCGGA
GTGCTGCGCCAATGCCGGTCGTCGAAGCTCGTAGAGCCAGACGGGGTAGA
GCCGGTCGAACTAAGAGTTTCTCCGAAGTCCCCACTGATGAAGTTCGAAA
GGAATATTCTTACGATTTCCATCAAGAAAAGGTTTCAAGAGCGATGTCTA
TGCATCGTGAATCGAACGCTGAACCACCTCAGCCACCTCCTGCGTCAAAG
AAAAGTAGAGGTGTACGTAGACTTTTTGGTCTCAAGTCCTGA
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protein sequence of Gvermi1977.t1

>Gvermi1977.t1 ID=Gvermi1977.t1|Name=Gvermi1977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
MSADESAYKSDDNLPQVFRLRSQGTFLAKSSDFTRDAAILHTTEIEVDIQ
GMHDGRLAGREGSAGVGFVSAKTRLDRIFQKDFQTRGSSSKPPPPPPPPP
PPPAVQSKAKDSSNSESGKEKSTLFTEADQSSASKKTDANSSGDRPPTNI
VAPPPIEGMYFRSPTRHVKLIKTRLSDLPAIVQDQEPQIRGGVAVYRVSD
DVNRAKYGAMVEINAVDYVNRLKGTVRDLQRQLSVVQGILEQEREKGRQT
NKNLRGSIRMGTFMGRRSKDPENRSSDKKRSLKGRNSSNASATTSNTSSA
RGSPNSSISEHKIPGVRARPNPRAVNFPRGFGFHPERFRDSKPQRAEQLD
NTIVPTKTDEDVFIREDCADSNDETVSHAVKDNSKNANTSVPEDASKIIL
PGDDVNQTQSSDPNASTDYTRTFHPRKPLQQDRSAAPMPVVEARRARRGR
AGRTKSFSEVPTDEVRKEYSYDFHQEKVSRAMSMHRESNAEPPQPPPASK
KSRGVRRLFGLKS*
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mRNA from alignment at ScGOVlb_1622:2594979..2596520+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1977.t1 ID=Gvermi1977.t1|Name=Gvermi1977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_1622:2594979..2596520+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCTGATGAGAGCGCATACAAGAGCGATGATAATCTCCCACAGGT
GTTCAGACTGCGCAGCCAAGGCACCTTCCTTGCGAAAAGCTCTGATTTTA
CACGTGACGCCGCGATTCTCCACACCACCGAGATTGAAGTCGACATTCAA
GGAATGCACGACGGCCGTTTGGCGGGACGAGAGGGTTCCGCAGGAGTCGG
GTTCGTTTCAGCAAAGACAAGACTGGATCGGATATTTCAAAAAGACTTTC
AGACGAGAGGGTCGTCCTCTAAGccgccaccgccaccaccgccaccaccg
ccaccccccgcAGTTCAGTCGAAAGCCAAAGATTCGTCGAATTCTGAGTC
AGGCAAGGAGAAAAGCACCCTTTTCACCGAAGCAGACCAATCTTCTGCTA
GTAAGAAAACAGATGCGAATAGTAGCGGCGACAGACCCCCAACAAATATT
GTTGCCCCGCCCCCCATCGAGGGCATGTACTTCCGTTCTCCGACGAGGCA
CGTAAAACTTATCAAGACCAGGCTTTCAGACCTGCCTGCAATTGTTCAAG
ATCAGGAACCTCAAATTCGCGGTGGAGTTGCTGTGTACAGGGTCTCTGAC
GACGTGAACCGTGCAAAGTACGGTGCGATGGTCGAGATAAACGCAGTTGA
CTACGTTAATCGGCTAAAAGGCACCGTTCGTGATCTTCAGCGTCAATTGA
GCGTAGTCCAGGGAATTTTGGAACAAGAGAGAGAGAAGGGGCGCCAGACG
AACAAAAATTTGAGAGGCTCAATCCGTATGGGCACATTTATGGGAAGAAG
GTCAAAGGATCCCGAGAACAGGTCCTCAGACAAGAAGCGCTCACTAAAGG
GTAGGAATAGTTCCAATGCCAGTGCAACTACAAGCAATACATCTTCTGCA
AGGGGCTCTCCTAATTCAAGCATATCTGAACACAAGATCCCCGGCGTCCG
TGCAAGGCCAAACCCCCGTGCCGTTAACTTTCCGCGTGGGTTTGGATTTC
ATCCGGAACGGTTCAGAGATTCCAAACCACAGCGAGCAGAACAACTCGAC
AACACAATAGTTCCAACCAAGACAGATGAAGATGTATTTATCAGGGAAGA
CTGCGCTGATTCGAACGATGAAACGGTTTCACATGCAGTCAAAGATAATT
CAAAGAATGCCAATACGAGCGTTCCTGAAGACGCAAGTAAGATTATACTT
CCTGGTGATGACGTCAATCAAACGCAATCCTCAGACCCCAATGCATCTAC
TGATTACACGAGAACCTTCCATCCAAGGAAACCGCTTCAACAAGATCGGA
GTGCTGCGCCAATGCCGGTCGTCGAAGCTCGTAGAGCCAGACGGGGTAGA
GCCGGTCGAACTAAGAGTTTCTCCGAAGTCCCCACTGATGAAGTTCGAAA
GGAATATTCTTACGATTTCCATCAAGAAAAGGTTTCAAGAGCGATGTCTA
TGCATCGTGAATCGAACGCTGAACCACCTCAGCCACCTCCTGCGTCAAAG
AAAAGTAGAGGTGTACGTAGACTTTTTGGTCTCAAGTCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2594979..2596520+

>Gvermi1977.t1 ID=Gvermi1977.t1|Name=Gvermi1977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1542bp|location=Sequence derived from alignment at ScGOVlb_1622:2594979..2596520+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCTGATGAGAGCGCATACAAGAGCGATGATAATCTCCCACAGGT
GTTCAGACTGCGCAGCCAAGGCACCTTCCTTGCGAAAAGCTCTGATTTTA
CACGTGACGCCGCGATTCTCCACACCACCGAGATTGAAGTCGACATTCAA
GGAATGCACGACGGCCGTTTGGCGGGACGAGAGGGTTCCGCAGGAGTCGG
GTTCGTTTCAGCAAAGACAAGACTGGATCGGATATTTCAAAAAGACTTTC
AGACGAGAGGGTCGTCCTCTAAGccgccaccgccaccaccgccaccaccg
ccaccccccgcAGTTCAGTCGAAAGCCAAAGATTCGTCGAATTCTGAGTC
AGGCAAGGAGAAAAGCACCCTTTTCACCGAAGCAGACCAATCTTCTGCTA
GTAAGAAAACAGATGCGAATAGTAGCGGCGACAGACCCCCAACAAATATT
GTTGCCCCGCCCCCCATCGAGGGCATGTACTTCCGTTCTCCGACGAGGCA
CGTAAAACTTATCAAGACCAGGCTTTCAGACCTGCCTGCAATTGTTCAAG
ATCAGGAACCTCAAATTCGCGGTGGAGTTGCTGTGTACAGGGTCTCTGAC
GACGTGAACCGTGCAAAGTACGGTGCGATGGTCGAGATAAACGCAGTTGA
CTACGTTAATCGGCTAAAAGGCACCGTTCGTGATCTTCAGCGTCAATTGA
GCGTAGTCCAGGGAATTTTGGAACAAGAGAGAGAGAAGGGGCGCCAGACG
AACAAAAATTTGAGAGGCTCAATCCGTATGGGCACATTTATGGGAAGAAG
GTCAAAGGATCCCGAGAACAGGTCCTCAGACAAGAAGCGCTCACTAAAGG
GTAGGAATAGTTCCAATGCCAGTGCAACTACAAGCAATACATCTTCTGCA
AGGGGCTCTCCTAATTCAAGCATATCTGAACACAAGATCCCCGGCGTCCG
TGCAAGGCCAAACCCCCGTGCCGTTAACTTTCCGCGTGGGTTTGGATTTC
ATCCGGAACGGTTCAGAGATTCCAAACCACAGCGAGCAGAACAACTCGAC
AACACAATAGTTCCAACCAAGACAGATGAAGATGTATTTATCAGGGAAGA
CTGCGCTGATTCGAACGATGAAACGGTTTCACATGCAGTCAAAGATAATT
CAAAGAATGCCAATACGAGCGTTCCTGAAGACGCAAGTAAGATTATACTT
CCTGGTGATGACGTCAATCAAACGCAATCCTCAGACCCCAATGCATCTAC
TGATTACACGAGAACCTTCCATCCAAGGAAACCGCTTCAACAAGATCGGA
GTGCTGCGCCAATGCCGGTCGTCGAAGCTCGTAGAGCCAGACGGGGTAGA
GCCGGTCGAACTAAGAGTTTCTCCGAAGTCCCCACTGATGAAGTTCGAAA
GGAATATTCTTACGATTTCCATCAAGAAAAGGTTTCAAGAGCGATGTCTA
TGCATCGTGAATCGAACGCTGAACCACCTCAGCCACCTCCTGCGTCAAAG
AAAAGTAGAGGTGTACGTAGACTTTTTGGTCTCAAGTCCTGA
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