Gvermi1976.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1976.t1
Unique NameGvermi1976.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2591769..2592842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1976Gvermi1976Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2591769..2592842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1976.t1.stop1Gvermi1976.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2591769..2591771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1976.t1.CDS1Gvermi1976.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2591769..2592842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1976.t1.exon1Gvermi1976.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2591769..2592842 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1976.t1.start1Gvermi1976.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2592840..2592842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1976.t1Gvermi1976.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2591769..2592842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1976.t1 ID=Gvermi1976.t1|Name=Gvermi1976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=358bp
MEPAFRAALAAYKSHAAVAFHQARQARAAASDPHAAATPPRVSPLPFDRA
SFPALTQYLSDAAEAYQDWKRRPPVSPRPTAAPQKLGSGQLVHALFASLR
RDRWLESLAKRAHFVRTPPAVPVMQIIVCGIPHDVRRSAHRRFMTHKAVR
EQCAAQEHDCSSSPALGTVHADQLPAVCLAFITKDDAYLVHITRCRLLYS
EGKTTLHQPQSIAPPKLQDNCDDVKKRYLGKPDEMYRRKTARKFARWRRK
QRELHQEKLAAELRAEKEMKRRRGYDHRLTIREARDSTFAPFLFDSSCNA
YAYSSKITEAPKLRKVMVTKYSDVNQSSNEQPDQWQRAREAAETNPLFHT
RVMNRFA*
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spliced messenger RNA

>Gvermi1976.t1 ID=Gvermi1976.t1|Name=Gvermi1976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_1622:2591769..2592842- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGCGTTTCGCGCTGCCTTGGCAGCTTACAAATCGCACGCTGC
CGTCGCGTTCCATCAAGCCCGCCAAGCGCGCGCCGCCGCCTCGGACCCGC
ACGCTGCTGCGACTCCGCCCCGCGTCAGCCCTCTCCCATTTGACAGGGCC
TCGTTCCCTGCCCTCACGCAGTACCTTTCGGACGCCGCGGAAGCCTACCA
AGATTGGAAGCGTCGCCCGCCGGTATCACCGCGGCCGACAGCTGCGCCGC
AGAAGCTGGGCAGTGGACAGCTCGTGCACGCGCTGTTTGCCTCTTTGAGG
CGCGACCGATGGCTCGAGTCGCTCGCTAAACGTGCCCATTTTGTCCGAAC
TCCGCCGGCGGTGCCTGTGATGCAAATTATCGTGTGCGGCATTCCTCACG
ATGTGCGCCGTTCAGCGCACCGACGGTTCATGACGCACAAGGCAGTTCGG
GAACAGTGCGCTGCTCAGGAACACGATTGTTCATCGTCCCCCGCGCTTGG
TACCGTGCACGCGGACCAGCTCCCCGCAGTCTGTTTGGCATTTATCACAA
AAGACGATGCTTATCTGGTGCACATTACCAGATGTCGGCTTCTCTACTCG
GAAGGGAAAACAACTCTTCATCAACCTCAAAGCATCGCTCCGCCCAAACT
TCAAGATAACTGCGACGACGTTAAAAAGAGGTATCTTGGAAAGCCAGACG
AAATGTATCGTCGCAAGACCGCCCGAAAGTTTGCCAGGTGGAGACGAAAG
CAGCGTGAGCTACATCAAGAAAAACTGGCCGCTGAACTTCGAGCAGAGAA
GGAAATGAAGAGGAGACGAGGTTACGATCACCGTCTGACCATTCGAGAGG
CCCGAGATTCCACTTTTGCCCCATTCCTGTTCGATTCCAGTTGCAATGCT
TATGCGTACTCCTCCAAAATTACAGAGGCGCCAAAGTTGCGAAAGGTTAT
GGTTACAAAGTATAGTGATGTCAACCAGTCATCAAATGAGCAACCAGATC
AATGGCAACGCGCCCGTGAAGCTGCCGAAACTAATCCTCTATTTCACACT
AGAGTCATGAACCGTTTCGCGTGA
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protein sequence of Gvermi1976.t1

>Gvermi1976.t1 ID=Gvermi1976.t1|Name=Gvermi1976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=358bp
MEPAFRAALAAYKSHAAVAFHQARQARAAASDPHAAATPPRVSPLPFDRA
SFPALTQYLSDAAEAYQDWKRRPPVSPRPTAAPQKLGSGQLVHALFASLR
RDRWLESLAKRAHFVRTPPAVPVMQIIVCGIPHDVRRSAHRRFMTHKAVR
EQCAAQEHDCSSSPALGTVHADQLPAVCLAFITKDDAYLVHITRCRLLYS
EGKTTLHQPQSIAPPKLQDNCDDVKKRYLGKPDEMYRRKTARKFARWRRK
QRELHQEKLAAELRAEKEMKRRRGYDHRLTIREARDSTFAPFLFDSSCNA
YAYSSKITEAPKLRKVMVTKYSDVNQSSNEQPDQWQRAREAAETNPLFHT
RVMNRFA*
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mRNA from alignment at ScGOVlb_1622:2591769..2592842-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1976.t1 ID=Gvermi1976.t1|Name=Gvermi1976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_1622:2591769..2592842- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCCCGCGTTTCGCGCTGCCTTGGCAGCTTACAAATCGCACGCTGC
CGTCGCGTTCCATCAAGCCCGCCAAGCGCGCGCCGCCGCCTCGGACCCGC
ACGCTGCTGCGACTCCGCCCCGCGTCAGCCCTCTCCCATTTGACAGGGCC
TCGTTCCCTGCCCTCACGCAGTACCTTTCGGACGCCGCGGAAGCCTACCA
AGATTGGAAGCGTCGCCCGCCGGTATCACCGCGGCCGACAGCTGCGCCGC
AGAAGCTGGGCAGTGGACAGCTCGTGCACGCGCTGTTTGCCTCTTTGAGG
CGCGACCGATGGCTCGAGTCGCTCGCTAAACGTGCCCATTTTGTCCGAAC
TCCGCCGGCGGTGCCTGTGATGCAAATTATCGTGTGCGGCATTCCTCACG
ATGTGCGCCGTTCAGCGCACCGACGGTTCATGACGCACAAGGCAGTTCGG
GAACAGTGCGCTGCTCAGGAACACGATTGTTCATCGTCCCCCGCGCTTGG
TACCGTGCACGCGGACCAGCTCCCCGCAGTCTGTTTGGCATTTATCACAA
AAGACGATGCTTATCTGGTGCACATTACCAGATGTCGGCTTCTCTACTCG
GAAGGGAAAACAACTCTTCATCAACCTCAAAGCATCGCTCCGCCCAAACT
TCAAGATAACTGCGACGACGTTAAAAAGAGGTATCTTGGAAAGCCAGACG
AAATGTATCGTCGCAAGACCGCCCGAAAGTTTGCCAGGTGGAGACGAAAG
CAGCGTGAGCTACATCAAGAAAAACTGGCCGCTGAACTTCGAGCAGAGAA
GGAAATGAAGAGGAGACGAGGTTACGATCACCGTCTGACCATTCGAGAGG
CCCGAGATTCCACTTTTGCCCCATTCCTGTTCGATTCCAGTTGCAATGCT
TATGCGTACTCCTCCAAAATTACAGAGGCGCCAAAGTTGCGAAAGGTTAT
GGTTACAAAGTATAGTGATGTCAACCAGTCATCAAATGAGCAACCAGATC
AATGGCAACGCGCCCGTGAAGCTGCCGAAACTAATCCTCTATTTCACACT
AGAGTCATGAACCGTTTCGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2591769..2592842-

>Gvermi1976.t1 ID=Gvermi1976.t1|Name=Gvermi1976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1074bp|location=Sequence derived from alignment at ScGOVlb_1622:2591769..2592842- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCCCGCGTTTCGCGCTGCCTTGGCAGCTTACAAATCGCACGCTGC
CGTCGCGTTCCATCAAGCCCGCCAAGCGCGCGCCGCCGCCTCGGACCCGC
ACGCTGCTGCGACTCCGCCCCGCGTCAGCCCTCTCCCATTTGACAGGGCC
TCGTTCCCTGCCCTCACGCAGTACCTTTCGGACGCCGCGGAAGCCTACCA
AGATTGGAAGCGTCGCCCGCCGGTATCACCGCGGCCGACAGCTGCGCCGC
AGAAGCTGGGCAGTGGACAGCTCGTGCACGCGCTGTTTGCCTCTTTGAGG
CGCGACCGATGGCTCGAGTCGCTCGCTAAACGTGCCCATTTTGTCCGAAC
TCCGCCGGCGGTGCCTGTGATGCAAATTATCGTGTGCGGCATTCCTCACG
ATGTGCGCCGTTCAGCGCACCGACGGTTCATGACGCACAAGGCAGTTCGG
GAACAGTGCGCTGCTCAGGAACACGATTGTTCATCGTCCCCCGCGCTTGG
TACCGTGCACGCGGACCAGCTCCCCGCAGTCTGTTTGGCATTTATCACAA
AAGACGATGCTTATCTGGTGCACATTACCAGATGTCGGCTTCTCTACTCG
GAAGGGAAAACAACTCTTCATCAACCTCAAAGCATCGCTCCGCCCAAACT
TCAAGATAACTGCGACGACGTTAAAAAGAGGTATCTTGGAAAGCCAGACG
AAATGTATCGTCGCAAGACCGCCCGAAAGTTTGCCAGGTGGAGACGAAAG
CAGCGTGAGCTACATCAAGAAAAACTGGCCGCTGAACTTCGAGCAGAGAA
GGAAATGAAGAGGAGACGAGGTTACGATCACCGTCTGACCATTCGAGAGG
CCCGAGATTCCACTTTTGCCCCATTCCTGTTCGATTCCAGTTGCAATGCT
TATGCGTACTCCTCCAAAATTACAGAGGCGCCAAAGTTGCGAAAGGTTAT
GGTTACAAAGTATAGTGATGTCAACCAGTCATCAAATGAGCAACCAGATC
AATGGCAACGCGCCCGTGAAGCTGCCGAAACTAATCCTCTATTTCACACT
AGAGTCATGAACCGTTTCGCGTGA
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