Gvermi1966.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1966.t1
Unique NameGvermi1966.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2561806..2562816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010274795.1
PFAMsETF
Max annot lvl35493|Streptophyta
KEGG koko:K03521
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006551,GO:0006552,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0015994,GO:0015996,GO:0016054,GO:0016491,GO:0019439,GO:0019752,GO:0022900,GO:0033013,GO:0033015,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046149,GO:0046395,GO:0046483,GO:0046700,GO:0051186,GO:0051187,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Evalue2.88e-101
EggNOG OGsCOG2086@1|root,KOG3180@2759|Eukaryota,37KN8@33090|Viridiplantae,3G78M@35493|Streptophyta
DescriptionElectron transfer flavoprotein subunit beta
COG categoryC
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1966Gvermi1966Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2561806..2562816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1966.t1Gvermi1966.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2561806..2562816 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1966.t1.start1Gvermi1966.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2561806..2561808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1966.t1.CDS1Gvermi1966.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2561806..2562240 +
Gvermi1966.t1.CDS2Gvermi1966.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2562475..2562816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1966.t1.exon1Gvermi1966.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2561806..2562240 +
Gvermi1966.t1.exon2Gvermi1966.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2562475..2562816 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1966.t1.intron1Gvermi1966.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 2562241..2562474 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1966.t1.stop1Gvermi1966.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2562814..2562816 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1966.t1 ID=Gvermi1966.t1|Name=Gvermi1966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=259bp
MTGRRILVGVKRVVDYAVKIRVKPDGSGVDTSSVKMSMNPFCEIAVEEAL
RLREANIAAEVIAVSIGPKKSVDTLRVALAMGADKAIHVSVPDQLPELQP
LAIASVLKHLVDEKKPDMVILGKQSIDGDNNQTGQMLAGMLGWPQGTFAS
SVNVESETASAINVTREVDGGLETVELALPAVVTCDLRLNKPRFTSLSNT
MKAKKKKVETIDVGSLGIELSSKLQTISVSEPPKRPPGIIVKDVDELVEK
LHTEAKVI*
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spliced messenger RNA

>Gvermi1966.t1 ID=Gvermi1966.t1|Name=Gvermi1966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=777bp|location=Sequence derived from alignment at ScGOVlb_1622:2561806..2562816+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGTCGAAGGATTCTCGTGGGAGTCAAAAGGGTTGTTGACTATGC
CGTCAAAATTCGTGTGAAACCAGATGGATCGGGAGTAGATACTTCGAGTG
TGAAGATGTCTATGAACCCTTTTTGTGAAATTGCCGTGGAGGAAGCTCTT
CGTCTTAGAGAAGCAAACATAGCTGCTGAAGTGATTGCTGTGTCGATTGG
TCCAAAGAAATCAGTGGATACATTGCGAGTAGCGCTGGCGATGGGCGCCG
ACAAGGCAATCCACGTTTCTGTGCCTGATCAGCTGCCAGAACTTCAGCCA
CTGGCAATTGCTTCAGTACTTAAGCACCTTGTCGACGAGAAAAAACCGGA
TATGGTAATCCTTGGCAAACAGAGTATTGATGGCGACAACAACCAAACAG
GTCAGATGCTCGCCGGAATGCTGGGCTGGCCACAGGGAACGTTTGCGAGT
AGCGTCAATGTAGAAAGCGAAACCGCTTCAGCGATTAATGTCACTCGCGA
AGTAGACGGTGGTCTGGAAACAGTAGAGCTCGCATTGCCTGCCGTAGTGA
CATGCGATTTGCGCCTAAACAAACCAAGGTTTACTTCACTATCAAACACA
ATGAAAGCCAAAAAGAAGAAGGTGGAAACCATTGACGTCGGCTCCCTTGG
TATTGAGCTTTCGTCTAAGTTGCAGACCATCTCGGTTTCTGAGCCACCGA
AACGACCTCCCGGGATCATCGTGAAGGATGTAGATGAGCTCGTCGAGAAG
CTCCACACAGAGGCCAAGGTAATTTAG
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protein sequence of Gvermi1966.t1

>Gvermi1966.t1 ID=Gvermi1966.t1|Name=Gvermi1966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=259bp
MTGRRILVGVKRVVDYAVKIRVKPDGSGVDTSSVKMSMNPFCEIAVEEAL
RLREANIAAEVIAVSIGPKKSVDTLRVALAMGADKAIHVSVPDQLPELQP
LAIASVLKHLVDEKKPDMVILGKQSIDGDNNQTGQMLAGMLGWPQGTFAS
SVNVESETASAINVTREVDGGLETVELALPAVVTCDLRLNKPRFTSLSNT
MKAKKKKVETIDVGSLGIELSSKLQTISVSEPPKRPPGIIVKDVDELVEK
LHTEAKVI*
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mRNA from alignment at ScGOVlb_1622:2561806..2562816+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1966.t1 ID=Gvermi1966.t1|Name=Gvermi1966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at ScGOVlb_1622:2561806..2562816+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGGTCGAAGGATTCTCGTGGGAGTCAAAAGGGTTGTTGACTATGC
CGTCAAAATTCGTGTGAAACCAGATGGATCGGGAGTAGATACTTCGAGTG
TGAAGATGTCTATGAACCCTTTTTGTGAAATTGCCGTGGAGGAAGCTCTT
CGTCTTAGAGAAGCAAACATAGCTGCTGAAGTGATTGCTGTGTCGATTGG
TCCAAAGAAATCAGTGGATACATTGCGAGTAGCGCTGGCGATGGGCGCCG
ACAAGGCAATCCACGTTTCTGTGCCTGATCAGCTGCCAGAACTTCAGCCA
CTGGCAATTGCTTCAGTACTTAAGCACCTTGTCGACGAGAAAAAACCGGA
TATGGTAATCCTTGGCAAACAGAGTATTGATGGCGACAACAACCAAACAG
GTCAGATGCTCGCCGGAATGCTGGGCTGGCCACAGGTACGTTTCATACCG
CTTTTCATGCGTGATGTAATGCTTTGGGATGATGATATCACATCCATCAC
GACGGTCTTATGATAGTGCCGAACTTAACCCTCGAGCCAAACCCCTGATT
CGAAACGGATTCGGAAACTCCGATATCTGACTGAAGCACACGCCCACCAG
ACGGATAAGCGCCGCCGTTGTCGTAATTGACGTCTAACCTTACATTGTTT
TTCTTTGCTATGCCTTCAGGGAACGTTTGCGAGTAGCGTCAATGTAGAAA
GCGAAACCGCTTCAGCGATTAATGTCACTCGCGAAGTAGACGGTGGTCTG
GAAACAGTAGAGCTCGCATTGCCTGCCGTAGTGACATGCGATTTGCGCCT
AAACAAACCAAGGTTTACTTCACTATCAAACACAATGAAAGCCAAAAAGA
AGAAGGTGGAAACCATTGACGTCGGCTCCCTTGGTATTGAGCTTTCGTCT
AAGTTGCAGACCATCTCGGTTTCTGAGCCACCGAAACGACCTCCCGGGAT
CATCGTGAAGGATGTAGATGAGCTCGTCGAGAAGCTCCACACAGAGGCCA
AGGTAATTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2561806..2562816+

>Gvermi1966.t1 ID=Gvermi1966.t1|Name=Gvermi1966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=777bp|location=Sequence derived from alignment at ScGOVlb_1622:2561806..2562816+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGGTCGAAGGATTCTCGTGGGAGTCAAAAGGGTTGTTGACTATGC
CGTCAAAATTCGTGTGAAACCAGATGGATCGGGAGTAGATACTTCGAGTG
TGAAGATGTCTATGAACCCTTTTTGTGAAATTGCCGTGGAGGAAGCTCTT
CGTCTTAGAGAAGCAAACATAGCTGCTGAAGTGATTGCTGTGTCGATTGG
TCCAAAGAAATCAGTGGATACATTGCGAGTAGCGCTGGCGATGGGCGCCG
ACAAGGCAATCCACGTTTCTGTGCCTGATCAGCTGCCAGAACTTCAGCCA
CTGGCAATTGCTTCAGTACTTAAGCACCTTGTCGACGAGAAAAAACCGGA
TATGGTAATCCTTGGCAAACAGAGTATTGATGGCGACAACAACCAAACAG
GTCAGATGCTCGCCGGAATGCTGGGCTGGCCACAGGGAACGTTTGCGAGT
AGCGTCAATGTAGAAAGCGAAACCGCTTCAGCGATTAATGTCACTCGCGA
AGTAGACGGTGGTCTGGAAACAGTAGAGCTCGCATTGCCTGCCGTAGTGA
CATGCGATTTGCGCCTAAACAAACCAAGGTTTACTTCACTATCAAACACA
ATGAAAGCCAAAAAGAAGAAGGTGGAAACCATTGACGTCGGCTCCCTTGG
TATTGAGCTTTCGTCTAAGTTGCAGACCATCTCGGTTTCTGAGCCACCGA
AACGACCTCCCGGGATCATCGTGAAGGATGTAGATGAGCTCGTCGAGAAG
CTCCACACAGAGGCCAAGGTAATTTAG
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