Gvermi1957.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi1957.t1
Unique Name	Gvermi1957.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	675

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1622	contig	ScGOVlb_1622:2508589..2510613 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP267CT
PFAMs	DDHD
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13619
GOs	GO:0003674,GO:0003824,GO:0004620,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0031974,GO:0032048,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046471,GO:0046486,GO:0046872,GO:0070013,GO:0071704,GO:1901575
Evalue	1.74e-65
EggNOG OGs	KOG2308@1\|root,KOG2308@2759\|Eukaryota
Description	phospholipase activity
COG category	S
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi1957	Gvermi1957	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1622 2508589..2510613 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1957.t1.start1	Gvermi1957.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1622 2508589..2508591 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1957.t1.CDS1	Gvermi1957.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1622 2508589..2510613 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1957.t1.exon1	Gvermi1957.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1622 2508589..2510613 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1957.t1.stop1	Gvermi1957.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1622 2510611..2510613 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1957.t1	Gvermi1957.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1622 2508589..2510613 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1622:2508589..2510613+
coding sequence from alignment at ScGOVlb_1622:2508589..2510613+

mRNA sequence

>Gvermi1957.t1 ID=Gvermi1957.t1|Name=Gvermi1957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=675bp
MSSSSPILDVDRCLLRDSALLTLVRPDAAGYLYKKSNLSGWYKYWFSLSG
SQLLYFERTRSARRGLLVGTISLFRHKLTIINSFKRRREFEITDAAGKLH
VLRAGSDAEMHWWVQTFTTSRNKIPPAKPISSALTSTSDAKTGLQLASSF
VESHLKVDHVLCIVHGIGVSPDILAGNLRHLHESYAEIMDKVFPDIDFRV
EMLPIHWRPALTKLDIHTKLQAVVPRTPVPDEANPLRQFMVHRIVDYVYY
THERYRRHIMREVCSQLNNQVDAFRKRRPDFNGTISVMGHSLGAALCYDL
MCRKVYDDQVLLESEGMRLNFDAVNLFCVGNPLGTFLGLDPSIGLNADMY
KLPFRLFNIYKFHDPVATRLEPLRDIERANRPPVVIPCWFNMGLRETTSQ
WLGGLWPGQKKIADHDDERSVPASPSSSPSAVEEHEDGAEGTPRRWSRSP
SRPSLDYELCESANGGQIRRYSSGGLSPRKEKELYEEEAGSDVVLENPMR
LDYGLQMSSTIEDLSTSWSALRAHTDYWENRDTMLFMVSRMLKSAFSISD
DSDDVVASSLADRIIDEDIMMKRQHESTSNGAEWGREESEEVLLDDTVRQ
VVERVVDEAVAAHELMKLHPNVRMRHGGIAGRSPAVSKTDMNGDSNEGRG
ADSYSGWAAYLRGGWFGGDSSNKK*

spliced messenger RNA

>Gvermi1957.t1 ID=Gvermi1957.t1|Name=Gvermi1957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2025bp|location=Sequence derived from alignment at ScGOVlb_1622:2508589..2510613+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCTCTTCACCCATTCTCGACGTCGACCGATGTCTGCTTCGAGA
CAGCGCGCTGCTCACGCTCGTCCGCCCTGACGCGGCTGGATATCTTTACA
AGAAGTCAAACCTTTCCGGCTGGTACAAATACTGGTTCTCCCTTTCCGGC
TCTCAGCTCTTGTACTTTGAGCGCACGAGATCTGCCCGTCGTGGTTTGCT
GGTCGGCACCATCTCTCTCTTCAGACACAAGCTAACTATCATCAACTCCT
TCAAACGGCGCCGCGAATTTGAAATCACAGATGCCGCCGGCAAGCTGCAT
GTGCTTCGAGCGGGCTCCGACGCCGAAATGCATTGGTGGGTTCAGACATT
CACTACGTCCCGCAACAAAATTCCTCCCGCAAAACCTATATCCAGCGCGC
TTACTTCCACATCCGACGCCAAAACTGGGCTACAGTTGGCTTCTTCCTTC
GTTGAATCGCACCTCAAGGTCGATCATGTGTTGTGCATCGTGCATGGAAT
CGGCGTCAGTCCCGACATTCTCGCGGGAAACCTCAGGCACCTGCACGAGA
GCTACGCCGAAATTATGGACAAGGTCTTCCCCGATATCGACTTCCGCGTC
GAAATGTTGCCCATACACTGGCGACCCGCGCTTACCAAGCTTGATATCCA
CACGAAGCTCCAGGCTGTGGTGCCGAGGACCCCGGTTCCAGATGAAGCCA
ATCCGTTGCGTCAATTTATGGTGCATCGCATAGTCGATTATGTGTATTAC
ACACACGAGCGATATCGGCGTCACATCATGAGGGAAGTGTGTTCGCAGCT
GAACAATCAAGTTGACGCTTTCCGCAAACGCAGACCCGATTTCAACGGCA
CCATCAGCGTCATGGGGCACTCATTAGGCGCAGCGCTCTGTTATGATCTC
ATGTGTCGCAAGGTGTATGACGACCAAGTGCTGCTCGAGTCTGAAGGCAT
GCGGCTCAATTTCGACGCGGTCAACTTATTTTGCGTCGGCAATCCACTTG
GTACTTTTCTGGGGCTAGACCCGTCAATTGGACTCAACGCCGATATGTAC
AAACTACCGTTCCGGCTGTTCAATATTTATAAGTTTCACGATCCTGTGGC
CACGAGGCTGGAACCGTTGAGGGATATTGAACGAGCCAATAGGCCTCCCG
TTGTTATTCCATGCTGGTTTAATATGGGCCTGCGGGAAACAACGTCGCAA
TGGCTCGGTGGATTGTGGCCGGGTCAGAAAAAGATTGCTGATCATGATGA
TGAGCGCTCGGTTCCAGCGAGCCCCTCAAGCTCTCCGAGCGCGGTTGAAG
AGCATGAGGATGGTGCGGAAGGCACGCCTCGCAGATGGTCTCGATCGCCA
TCGAGACCGTCTCTGGACTACGAGTTGTGCGAATCAGCAAATGGTGGGCA
AATACGACGGTATTCAAGCGGGGGATTGTCGCCGCGAAAGGAAAAGGAGC
TGTACGAGGAGGAAGCGGGTTCCGATGTCGTGTTGGAGAATCCGATGCGA
CTCGACTATGGGCTGCAGATGTCGTCGACGATAGAGGACCTGTCAACGAG
CTGGAGCGCGTTGAGGGCGCATACGGACTATTGGGAAAACCGAGACACGA
TGCTGTTCATGGTGAGCCGAATGCTGAAGAGCGCGTTTTCGATTTCCGAT
GACAGCGATGACGTGGTGGCGAGCAGTCTAGCGGATCGCATCATTGACGA
GGATATCATGATGAAGAGACAGCATGAAAGCACGAGCAATGGTGCAGAGT
GGGGTCGTGAGGAGTCGGAGGAGGTTTTGCTGGATGACACGGTTCGACAG
GTGGTAGAACGCGTGGTAGACGAGGCGGTTGCGGCGCACGAGTTGATGAA
GTTGCACCCCAACGTTCGCATGAGGCACGGAGGGATTGCCGGCAGATCGC
CGGCCGTGAGCAAGACAGACATGAATggtgacagcaatgagggcaggggg
gcggacagctacagcgggtgggcggcatatctgaggggcgggtggtttgg
tggtgacagcagcaacaagaagtga

protein sequence of Gvermi1957.t1

>Gvermi1957.t1 ID=Gvermi1957.t1|Name=Gvermi1957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=675bp
MSSSSPILDVDRCLLRDSALLTLVRPDAAGYLYKKSNLSGWYKYWFSLSG
SQLLYFERTRSARRGLLVGTISLFRHKLTIINSFKRRREFEITDAAGKLH
VLRAGSDAEMHWWVQTFTTSRNKIPPAKPISSALTSTSDAKTGLQLASSF
VESHLKVDHVLCIVHGIGVSPDILAGNLRHLHESYAEIMDKVFPDIDFRV
EMLPIHWRPALTKLDIHTKLQAVVPRTPVPDEANPLRQFMVHRIVDYVYY
THERYRRHIMREVCSQLNNQVDAFRKRRPDFNGTISVMGHSLGAALCYDL
MCRKVYDDQVLLESEGMRLNFDAVNLFCVGNPLGTFLGLDPSIGLNADMY
KLPFRLFNIYKFHDPVATRLEPLRDIERANRPPVVIPCWFNMGLRETTSQ
WLGGLWPGQKKIADHDDERSVPASPSSSPSAVEEHEDGAEGTPRRWSRSP
SRPSLDYELCESANGGQIRRYSSGGLSPRKEKELYEEEAGSDVVLENPMR
LDYGLQMSSTIEDLSTSWSALRAHTDYWENRDTMLFMVSRMLKSAFSISD
DSDDVVASSLADRIIDEDIMMKRQHESTSNGAEWGREESEEVLLDDTVRQ
VVERVVDEAVAAHELMKLHPNVRMRHGGIAGRSPAVSKTDMNGDSNEGRG
ADSYSGWAAYLRGGWFGGDSSNKK*

mRNA from alignment at ScGOVlb_1622:2508589..2510613+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi1957.t1 ID=Gvermi1957.t1|Name=Gvermi1957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2025bp|location=Sequence derived from alignment at ScGOVlb_1622:2508589..2510613+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATCCTCTTCACCCATTCTCGACGTCGACCGATGTCTGCTTCGAGA
CAGCGCGCTGCTCACGCTCGTCCGCCCTGACGCGGCTGGATATCTTTACA
AGAAGTCAAACCTTTCCGGCTGGTACAAATACTGGTTCTCCCTTTCCGGC
TCTCAGCTCTTGTACTTTGAGCGCACGAGATCTGCCCGTCGTGGTTTGCT
GGTCGGCACCATCTCTCTCTTCAGACACAAGCTAACTATCATCAACTCCT
TCAAACGGCGCCGCGAATTTGAAATCACAGATGCCGCCGGCAAGCTGCAT
GTGCTTCGAGCGGGCTCCGACGCCGAAATGCATTGGTGGGTTCAGACATT
CACTACGTCCCGCAACAAAATTCCTCCCGCAAAACCTATATCCAGCGCGC
TTACTTCCACATCCGACGCCAAAACTGGGCTACAGTTGGCTTCTTCCTTC
GTTGAATCGCACCTCAAGGTCGATCATGTGTTGTGCATCGTGCATGGAAT
CGGCGTCAGTCCCGACATTCTCGCGGGAAACCTCAGGCACCTGCACGAGA
GCTACGCCGAAATTATGGACAAGGTCTTCCCCGATATCGACTTCCGCGTC
GAAATGTTGCCCATACACTGGCGACCCGCGCTTACCAAGCTTGATATCCA
CACGAAGCTCCAGGCTGTGGTGCCGAGGACCCCGGTTCCAGATGAAGCCA
ATCCGTTGCGTCAATTTATGGTGCATCGCATAGTCGATTATGTGTATTAC
ACACACGAGCGATATCGGCGTCACATCATGAGGGAAGTGTGTTCGCAGCT
GAACAATCAAGTTGACGCTTTCCGCAAACGCAGACCCGATTTCAACGGCA
CCATCAGCGTCATGGGGCACTCATTAGGCGCAGCGCTCTGTTATGATCTC
ATGTGTCGCAAGGTGTATGACGACCAAGTGCTGCTCGAGTCTGAAGGCAT
GCGGCTCAATTTCGACGCGGTCAACTTATTTTGCGTCGGCAATCCACTTG
GTACTTTTCTGGGGCTAGACCCGTCAATTGGACTCAACGCCGATATGTAC
AAACTACCGTTCCGGCTGTTCAATATTTATAAGTTTCACGATCCTGTGGC
CACGAGGCTGGAACCGTTGAGGGATATTGAACGAGCCAATAGGCCTCCCG
TTGTTATTCCATGCTGGTTTAATATGGGCCTGCGGGAAACAACGTCGCAA
TGGCTCGGTGGATTGTGGCCGGGTCAGAAAAAGATTGCTGATCATGATGA
TGAGCGCTCGGTTCCAGCGAGCCCCTCAAGCTCTCCGAGCGCGGTTGAAG
AGCATGAGGATGGTGCGGAAGGCACGCCTCGCAGATGGTCTCGATCGCCA
TCGAGACCGTCTCTGGACTACGAGTTGTGCGAATCAGCAAATGGTGGGCA
AATACGACGGTATTCAAGCGGGGGATTGTCGCCGCGAAAGGAAAAGGAGC
TGTACGAGGAGGAAGCGGGTTCCGATGTCGTGTTGGAGAATCCGATGCGA
CTCGACTATGGGCTGCAGATGTCGTCGACGATAGAGGACCTGTCAACGAG
CTGGAGCGCGTTGAGGGCGCATACGGACTATTGGGAAAACCGAGACACGA
TGCTGTTCATGGTGAGCCGAATGCTGAAGAGCGCGTTTTCGATTTCCGAT
GACAGCGATGACGTGGTGGCGAGCAGTCTAGCGGATCGCATCATTGACGA
GGATATCATGATGAAGAGACAGCATGAAAGCACGAGCAATGGTGCAGAGT
GGGGTCGTGAGGAGTCGGAGGAGGTTTTGCTGGATGACACGGTTCGACAG
GTGGTAGAACGCGTGGTAGACGAGGCGGTTGCGGCGCACGAGTTGATGAA
GTTGCACCCCAACGTTCGCATGAGGCACGGAGGGATTGCCGGCAGATCGC
CGGCCGTGAGCAAGACAGACATGAATggtgacagcaatgagggcaggggg
gcggacagctacagcgggtgggcggcatatctgaggggcgggtggtttgg
tggtgacagcagcaacaagaagtga

Coding sequence (CDS) from alignment at ScGOVlb_1622:2508589..2510613+

>Gvermi1957.t1 ID=Gvermi1957.t1|Name=Gvermi1957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2025bp|location=Sequence derived from alignment at ScGOVlb_1622:2508589..2510613+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATCCTCTTCACCCATTCTCGACGTCGACCGATGTCTGCTTCGAGA
CAGCGCGCTGCTCACGCTCGTCCGCCCTGACGCGGCTGGATATCTTTACA
AGAAGTCAAACCTTTCCGGCTGGTACAAATACTGGTTCTCCCTTTCCGGC
TCTCAGCTCTTGTACTTTGAGCGCACGAGATCTGCCCGTCGTGGTTTGCT
GGTCGGCACCATCTCTCTCTTCAGACACAAGCTAACTATCATCAACTCCT
TCAAACGGCGCCGCGAATTTGAAATCACAGATGCCGCCGGCAAGCTGCAT
GTGCTTCGAGCGGGCTCCGACGCCGAAATGCATTGGTGGGTTCAGACATT
CACTACGTCCCGCAACAAAATTCCTCCCGCAAAACCTATATCCAGCGCGC
TTACTTCCACATCCGACGCCAAAACTGGGCTACAGTTGGCTTCTTCCTTC
GTTGAATCGCACCTCAAGGTCGATCATGTGTTGTGCATCGTGCATGGAAT
CGGCGTCAGTCCCGACATTCTCGCGGGAAACCTCAGGCACCTGCACGAGA
GCTACGCCGAAATTATGGACAAGGTCTTCCCCGATATCGACTTCCGCGTC
GAAATGTTGCCCATACACTGGCGACCCGCGCTTACCAAGCTTGATATCCA
CACGAAGCTCCAGGCTGTGGTGCCGAGGACCCCGGTTCCAGATGAAGCCA
ATCCGTTGCGTCAATTTATGGTGCATCGCATAGTCGATTATGTGTATTAC
ACACACGAGCGATATCGGCGTCACATCATGAGGGAAGTGTGTTCGCAGCT
GAACAATCAAGTTGACGCTTTCCGCAAACGCAGACCCGATTTCAACGGCA
CCATCAGCGTCATGGGGCACTCATTAGGCGCAGCGCTCTGTTATGATCTC
ATGTGTCGCAAGGTGTATGACGACCAAGTGCTGCTCGAGTCTGAAGGCAT
GCGGCTCAATTTCGACGCGGTCAACTTATTTTGCGTCGGCAATCCACTTG
GTACTTTTCTGGGGCTAGACCCGTCAATTGGACTCAACGCCGATATGTAC
AAACTACCGTTCCGGCTGTTCAATATTTATAAGTTTCACGATCCTGTGGC
CACGAGGCTGGAACCGTTGAGGGATATTGAACGAGCCAATAGGCCTCCCG
TTGTTATTCCATGCTGGTTTAATATGGGCCTGCGGGAAACAACGTCGCAA
TGGCTCGGTGGATTGTGGCCGGGTCAGAAAAAGATTGCTGATCATGATGA
TGAGCGCTCGGTTCCAGCGAGCCCCTCAAGCTCTCCGAGCGCGGTTGAAG
AGCATGAGGATGGTGCGGAAGGCACGCCTCGCAGATGGTCTCGATCGCCA
TCGAGACCGTCTCTGGACTACGAGTTGTGCGAATCAGCAAATGGTGGGCA
AATACGACGGTATTCAAGCGGGGGATTGTCGCCGCGAAAGGAAAAGGAGC
TGTACGAGGAGGAAGCGGGTTCCGATGTCGTGTTGGAGAATCCGATGCGA
CTCGACTATGGGCTGCAGATGTCGTCGACGATAGAGGACCTGTCAACGAG
CTGGAGCGCGTTGAGGGCGCATACGGACTATTGGGAAAACCGAGACACGA
TGCTGTTCATGGTGAGCCGAATGCTGAAGAGCGCGTTTTCGATTTCCGAT
GACAGCGATGACGTGGTGGCGAGCAGTCTAGCGGATCGCATCATTGACGA
GGATATCATGATGAAGAGACAGCATGAAAGCACGAGCAATGGTGCAGAGT
GGGGTCGTGAGGAGTCGGAGGAGGTTTTGCTGGATGACACGGTTCGACAG
GTGGTAGAACGCGTGGTAGACGAGGCGGTTGCGGCGCACGAGTTGATGAA
GTTGCACCCCAACGTTCGCATGAGGCACGGAGGGATTGCCGGCAGATCGC
CGGCCGTGAGCAAGACAGACATGAATggtgacagcaatgagggcaggggg
gcggacagctacagcgggtgggcggcatatctgaggggcgggtggtttgg
tggtgacagcagcaacaagaagtga