Gvermi1955.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1955.t1
Unique NameGvermi1955.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2501604..2502872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1538644.KO02_10400
PFAMsMetallophos
Max annot lvl976|Bacteroidetes
KEGG rclassRC00017
KEGG koko:K14379
KEGG ReactionR00548
KEGG Pathwayko00740,ko01100,ko04142,ko04380,ko05323,map00740,map01100,map04142,map04380,map05323
Evalue9.27e-49
EggNOG OGsCOG1409@1|root,COG1409@2|Bacteria,4NJT5@976|Bacteroidetes,1IQX3@117747|Sphingobacteriia
EC3.1.3.2
DescriptionAcid phosphatase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1955Gvermi1955Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2501604..2502872 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1955.t1.stop1Gvermi1955.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2501604..2501606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1955.t1.CDS1Gvermi1955.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2501604..2502872 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1955.t1.exon1Gvermi1955.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2501604..2502872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1955.t1.start1Gvermi1955.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2502870..2502872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1955.t1Gvermi1955.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2501604..2502872 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1955.t1 ID=Gvermi1955.t1|Name=Gvermi1955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MRAESAAARESALCKYSTMCIEQRAQDRASSYFRERSARQWLSAHSGALR
IAAAAGAICLLVGVFMIDSSLSSAHTKYAKAISWWNQANLGLKKSQECDA
ALGRRRMWVLDHVVGDELCVRHEKNSGKIAPEPGLRFQVVGDWGRDGMCC
QRDVAIEMASFARVSKPRFIVSVGDNFYDNGILSAMDGQVERSWRGVYLK
YDELKVPWKMTVGNHDYNGNVSAQEDLGRHDVFWQMKKRYYFDTYEDEGN
SVLIAYLDTTVMYYSEEQLKSFREHVRAEYRDEQIAQLDKALSESKARWK
IVIGHHPLQSSGENSVVESENLLQMRTVLLDTLNKHNVSAYFSGHEHLLE
QLQIGRLPAFISGAGSKISTVRRALNESVFSLDRQGFLDVVIRNDSDVMK
VRFVDLNGAVVRRTEVRRDARA*
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spliced messenger RNA

>Gvermi1955.t1 ID=Gvermi1955.t1|Name=Gvermi1955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1622:2501604..2502872- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCCGAAAGCGCGGCTGCACGGGAGAGCGCTTTGTGTAAATACTC
CACCATGTGCATTGAACAACGGGCGCAGGATCGAGCTTCAAGCTATTTTC
GCGAACGATCAGCACGGCAATGGTTGAGCGCGCACTCTGGCGCTCTGCGG
ATAGCGGCGGCGGCCGGCGCGATTTGTTTGCTTGTCGGGGTGTTCATGAT
AGATTCCTCGCTCTCAAGCGCCCATACGAAGTATGCCAAGGCCATAAGTT
GGTGGAACCAGGCAAATCTGGGGCTCAAGAAAAGTCAAGAGTGCGACGCG
GCGCTGGGAAGGCGGCGGATGTGGGTGTTAGACCACGTTGTGGGCGATGA
GTTGTGCGTGAGGCACGAGAAGAATAGCGGGAAAATAGCGCCTGAGCCAG
GGCTTCGATTCCAAGTCGTGGGAGACTGGGGAAGAGACGGCATGTGCTGC
CAACGTGATGTAGCCATCGAAATGGCCTCGTTTGCTCGCGTTTCGAAGCC
GAGATTCATCGTAAGTGTTGGGGATAACTTTTACGACAACGGCATTCTGA
GTGCGATGGACGGACAGGTGGAGCGGTCGTGGAGAGGCGTTTACTTGAAG
TATGATGAACTCAAAGTGCCGTGGAAAATGACCGTCGGGAATCACGACTA
CAATGGTAATGTGTCTGCGCAAGAAGATCTGGGAAGGCACGATGTGTTCT
GGCAGATGAAAAAGAGGTACTACTTTGATACGTACGAGGATGAGGGCAAT
TCTGTTCTCATCGCCTACTTGGACACAACCGTCATGTACTACAGCGAGGA
GCAATTGAAGTCGTTCAGAGAACATGTGAGGGCGGAGTATCGAGATGAGC
AAATTGCACAGCTGGACAAGGCTCTGAGCGAAAGCAAGGCGCGATGGAAG
ATTGTGATCGGGCACCACCCGCTGCAGTCTTCGGGCGAGAACTCCGTGGT
GGAGAGCGAAAACTTGCTACAGATGAGAACGGTGCTGCTGGACACTCTCA
ACAAGCACAACGTGAGTGCGTACTTCAGCGGACACGAGCACCTGCTGGAG
CAGCTGCAGATAGGCAGGCTGCCGGCGTTCATCTCCGGAGCGGGGTCGAA
GATCTCGACGGTGCGGCGCGCACTCAACGAGTCGGTGTTCTCGCTGGACC
GGCAGGGCTTCCTGGACGTGGTCATCCGCAACGACTCGGACGTGATGAAG
GTGCGCTTTGTGGATCTGAACGGTGCGGTGGTGCGCCGCACCGAAGTACG
GCGCGACGCTCGGGCGTAA
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protein sequence of Gvermi1955.t1

>Gvermi1955.t1 ID=Gvermi1955.t1|Name=Gvermi1955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MRAESAAARESALCKYSTMCIEQRAQDRASSYFRERSARQWLSAHSGALR
IAAAAGAICLLVGVFMIDSSLSSAHTKYAKAISWWNQANLGLKKSQECDA
ALGRRRMWVLDHVVGDELCVRHEKNSGKIAPEPGLRFQVVGDWGRDGMCC
QRDVAIEMASFARVSKPRFIVSVGDNFYDNGILSAMDGQVERSWRGVYLK
YDELKVPWKMTVGNHDYNGNVSAQEDLGRHDVFWQMKKRYYFDTYEDEGN
SVLIAYLDTTVMYYSEEQLKSFREHVRAEYRDEQIAQLDKALSESKARWK
IVIGHHPLQSSGENSVVESENLLQMRTVLLDTLNKHNVSAYFSGHEHLLE
QLQIGRLPAFISGAGSKISTVRRALNESVFSLDRQGFLDVVIRNDSDVMK
VRFVDLNGAVVRRTEVRRDARA*
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mRNA from alignment at ScGOVlb_1622:2501604..2502872-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1955.t1 ID=Gvermi1955.t1|Name=Gvermi1955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1622:2501604..2502872- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGCCGAAAGCGCGGCTGCACGGGAGAGCGCTTTGTGTAAATACTC
CACCATGTGCATTGAACAACGGGCGCAGGATCGAGCTTCAAGCTATTTTC
GCGAACGATCAGCACGGCAATGGTTGAGCGCGCACTCTGGCGCTCTGCGG
ATAGCGGCGGCGGCCGGCGCGATTTGTTTGCTTGTCGGGGTGTTCATGAT
AGATTCCTCGCTCTCAAGCGCCCATACGAAGTATGCCAAGGCCATAAGTT
GGTGGAACCAGGCAAATCTGGGGCTCAAGAAAAGTCAAGAGTGCGACGCG
GCGCTGGGAAGGCGGCGGATGTGGGTGTTAGACCACGTTGTGGGCGATGA
GTTGTGCGTGAGGCACGAGAAGAATAGCGGGAAAATAGCGCCTGAGCCAG
GGCTTCGATTCCAAGTCGTGGGAGACTGGGGAAGAGACGGCATGTGCTGC
CAACGTGATGTAGCCATCGAAATGGCCTCGTTTGCTCGCGTTTCGAAGCC
GAGATTCATCGTAAGTGTTGGGGATAACTTTTACGACAACGGCATTCTGA
GTGCGATGGACGGACAGGTGGAGCGGTCGTGGAGAGGCGTTTACTTGAAG
TATGATGAACTCAAAGTGCCGTGGAAAATGACCGTCGGGAATCACGACTA
CAATGGTAATGTGTCTGCGCAAGAAGATCTGGGAAGGCACGATGTGTTCT
GGCAGATGAAAAAGAGGTACTACTTTGATACGTACGAGGATGAGGGCAAT
TCTGTTCTCATCGCCTACTTGGACACAACCGTCATGTACTACAGCGAGGA
GCAATTGAAGTCGTTCAGAGAACATGTGAGGGCGGAGTATCGAGATGAGC
AAATTGCACAGCTGGACAAGGCTCTGAGCGAAAGCAAGGCGCGATGGAAG
ATTGTGATCGGGCACCACCCGCTGCAGTCTTCGGGCGAGAACTCCGTGGT
GGAGAGCGAAAACTTGCTACAGATGAGAACGGTGCTGCTGGACACTCTCA
ACAAGCACAACGTGAGTGCGTACTTCAGCGGACACGAGCACCTGCTGGAG
CAGCTGCAGATAGGCAGGCTGCCGGCGTTCATCTCCGGAGCGGGGTCGAA
GATCTCGACGGTGCGGCGCGCACTCAACGAGTCGGTGTTCTCGCTGGACC
GGCAGGGCTTCCTGGACGTGGTCATCCGCAACGACTCGGACGTGATGAAG
GTGCGCTTTGTGGATCTGAACGGTGCGGTGGTGCGCCGCACCGAAGTACG
GCGCGACGCTCGGGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2501604..2502872-

>Gvermi1955.t1 ID=Gvermi1955.t1|Name=Gvermi1955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1622:2501604..2502872- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGCCGAAAGCGCGGCTGCACGGGAGAGCGCTTTGTGTAAATACTC
CACCATGTGCATTGAACAACGGGCGCAGGATCGAGCTTCAAGCTATTTTC
GCGAACGATCAGCACGGCAATGGTTGAGCGCGCACTCTGGCGCTCTGCGG
ATAGCGGCGGCGGCCGGCGCGATTTGTTTGCTTGTCGGGGTGTTCATGAT
AGATTCCTCGCTCTCAAGCGCCCATACGAAGTATGCCAAGGCCATAAGTT
GGTGGAACCAGGCAAATCTGGGGCTCAAGAAAAGTCAAGAGTGCGACGCG
GCGCTGGGAAGGCGGCGGATGTGGGTGTTAGACCACGTTGTGGGCGATGA
GTTGTGCGTGAGGCACGAGAAGAATAGCGGGAAAATAGCGCCTGAGCCAG
GGCTTCGATTCCAAGTCGTGGGAGACTGGGGAAGAGACGGCATGTGCTGC
CAACGTGATGTAGCCATCGAAATGGCCTCGTTTGCTCGCGTTTCGAAGCC
GAGATTCATCGTAAGTGTTGGGGATAACTTTTACGACAACGGCATTCTGA
GTGCGATGGACGGACAGGTGGAGCGGTCGTGGAGAGGCGTTTACTTGAAG
TATGATGAACTCAAAGTGCCGTGGAAAATGACCGTCGGGAATCACGACTA
CAATGGTAATGTGTCTGCGCAAGAAGATCTGGGAAGGCACGATGTGTTCT
GGCAGATGAAAAAGAGGTACTACTTTGATACGTACGAGGATGAGGGCAAT
TCTGTTCTCATCGCCTACTTGGACACAACCGTCATGTACTACAGCGAGGA
GCAATTGAAGTCGTTCAGAGAACATGTGAGGGCGGAGTATCGAGATGAGC
AAATTGCACAGCTGGACAAGGCTCTGAGCGAAAGCAAGGCGCGATGGAAG
ATTGTGATCGGGCACCACCCGCTGCAGTCTTCGGGCGAGAACTCCGTGGT
GGAGAGCGAAAACTTGCTACAGATGAGAACGGTGCTGCTGGACACTCTCA
ACAAGCACAACGTGAGTGCGTACTTCAGCGGACACGAGCACCTGCTGGAG
CAGCTGCAGATAGGCAGGCTGCCGGCGTTCATCTCCGGAGCGGGGTCGAA
GATCTCGACGGTGCGGCGCGCACTCAACGAGTCGGTGTTCTCGCTGGACC
GGCAGGGCTTCCTGGACGTGGTCATCCGCAACGACTCGGACGTGATGAAG
GTGCGCTTTGTGGATCTGAACGGTGCGGTGGTGCGCCGCACCGAAGTACG
GCGCGACGCTCGGGCGTAA
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