Gvermi1953.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1953.t1
Unique NameGvermi1953.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2497895..2498926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705714.1
Preferred namePAQR3
PFAMsHlyIII
Max annot lvl2759|Eukaryota
KEGG koko:K07297
KEGG Pathwayko04152,ko04211,ko04920,ko04932,map04152,map04211,map04920,map04932
GOsGO:0000139,GO:0000165,GO:0001932,GO:0001933,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016310,GO:0019220,GO:0019222,GO:0019538,GO:0022008,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0031090,GO:0031323,GO:0031324,GO:0031344,GO:0031345,GO:0031399,GO:0031400,GO:0031984,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0033036,GO:0033135,GO:0033137,GO:0033365,GO:0033673,GO:0034067,GO:0034613,GO:0035556,GO:0036211,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051641,GO:0051716,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070727,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0098588,GO:0098791,GO:0120035,GO:1901564,GO:1902531,GO:1902532,GO:2000026
Evalue8.59e-39
EggNOG OGsCOG1272@1|root,KOG0748@2759|Eukaryota
Descriptionresponse to hormone
COG categoryT
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1953Gvermi1953Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2497895..2498926 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1953.t1.stop1Gvermi1953.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2497895..2497897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1953.t1.CDS1Gvermi1953.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2497895..2498926 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1953.t1.exon1Gvermi1953.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2497895..2498926 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1953.t1.start1Gvermi1953.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2498924..2498926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1953.t1Gvermi1953.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2497895..2498926 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1953.t1 ID=Gvermi1953.t1|Name=Gvermi1953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=344bp
MTASSASRKRRDRLLTILEIPSWMRDNDFLYGSYRPPHPSLRRIFFSAFF
TLHNDTINIWTHAVGFVFFLCVGIYILGPATSVHRHISRMAIACSQRAAS
TTADIHAHIKAIGVPNFCLTEHHHPSLVRQALSNLLNSHRIGLFPLILTA
VICLFFSTIFHAFWVHSPQALRLLGKLDFLGISLLITGHAISGIYYAFYC
TPTIAHRYYTLVILAELFAVPCIFAPAFGTPAARPFRVFVFAVLASTTLA
PLLHSIWLNTAARYDLAVGVGSAASALSVYAMGAMFYVSRFPECCRVGMH
DRFFASHQLLHIAVLLGVGFHLFGCWTLLEYRLDVGCSAASFP*
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spliced messenger RNA

>Gvermi1953.t1 ID=Gvermi1953.t1|Name=Gvermi1953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at ScGOVlb_1622:2497895..2498926- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCCTCCGCCTCGCGCAAGCGGCGTGATCGCCTGCTCACCAT
CCTCGAGATCCCGTCGTGGATGAGGGACAACGACTTTCTGTACGGCAGCT
ACAGACCCCCGCACCCCTCGCTGCGCAGGATCTTCTTCTCCGCCTTCTTC
ACCTTGCATAACGACACCATCAACATCTGGACGCATGCCGTGGGCTTCGT
CTTCTTCCTGTGCGTCGGCATCTACATCCTCGGTCCCGCAACCTCCGTGC
ACCGCCACATCTCGCGCATGGCCATCGCATGCTCGCAGCGCGCAGCCTCC
ACAACAGCCGACATCCACGCGCACATCAAGGCCATCGGCGTGCCTAATTT
TTGTCTCACCGAGCACCACCACCCCTCGCTCGTTCGTCAAGCCCTGTCCA
ATCTTCTAAACTCGCACCGCATCGGACTGTTCCCCCTCATCCTTACTGCT
GTCATCTGTCTCTTCTTCTCCACCATCTTCCACGCATTTTGGGTGCACTC
GCCGCAGGCCTTGCGTCTGTTGGGAAAGCTTGACTTTCTCGGCATCTCGC
TCCTCATCACCGGACATGCCATTTCGGGCATTTACTACGCCTTCTATTGC
ACCCCAACCATTGCGCATCGATACTACACCCTCGTCATTCTGGCCGAGCT
TTTCGCCGTTCCCTGTATATTCGCCCCTGCCTTTGGAACTCCAGCCGCCC
GTCCGTTCCGCGTCTTTGTGTTCGCCGTTCTGGCCAGTACCACCTTGGCC
CCGCTCTTACATTCTATTTGGCTGAATACCGCCGCCCGCTACGACCTCGC
CGTCGGTGTCGGTTCTGCCGCCTCCGCTCTATCCGTGTACGCCATGGGCG
CCATGTTCTACGTCTCTCGTTTTCCAGAATGCTGCCGCGTTGGAATGCAC
GACCGCTTTTTCGCATCTCACCAGCTCCTGCACATTGCTGTTTTGCTGGG
CGTCGGATTTCACCTTTTTGGATGCTGGACGCTTTTGGAGTACCGTCTAG
ACGTTGGCTGTTCCGCCGCCTCCTTTCCGTAG
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protein sequence of Gvermi1953.t1

>Gvermi1953.t1 ID=Gvermi1953.t1|Name=Gvermi1953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=344bp
MTASSASRKRRDRLLTILEIPSWMRDNDFLYGSYRPPHPSLRRIFFSAFF
TLHNDTINIWTHAVGFVFFLCVGIYILGPATSVHRHISRMAIACSQRAAS
TTADIHAHIKAIGVPNFCLTEHHHPSLVRQALSNLLNSHRIGLFPLILTA
VICLFFSTIFHAFWVHSPQALRLLGKLDFLGISLLITGHAISGIYYAFYC
TPTIAHRYYTLVILAELFAVPCIFAPAFGTPAARPFRVFVFAVLASTTLA
PLLHSIWLNTAARYDLAVGVGSAASALSVYAMGAMFYVSRFPECCRVGMH
DRFFASHQLLHIAVLLGVGFHLFGCWTLLEYRLDVGCSAASFP*
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mRNA from alignment at ScGOVlb_1622:2497895..2498926-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1953.t1 ID=Gvermi1953.t1|Name=Gvermi1953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at ScGOVlb_1622:2497895..2498926- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCTCCTCCGCCTCGCGCAAGCGGCGTGATCGCCTGCTCACCAT
CCTCGAGATCCCGTCGTGGATGAGGGACAACGACTTTCTGTACGGCAGCT
ACAGACCCCCGCACCCCTCGCTGCGCAGGATCTTCTTCTCCGCCTTCTTC
ACCTTGCATAACGACACCATCAACATCTGGACGCATGCCGTGGGCTTCGT
CTTCTTCCTGTGCGTCGGCATCTACATCCTCGGTCCCGCAACCTCCGTGC
ACCGCCACATCTCGCGCATGGCCATCGCATGCTCGCAGCGCGCAGCCTCC
ACAACAGCCGACATCCACGCGCACATCAAGGCCATCGGCGTGCCTAATTT
TTGTCTCACCGAGCACCACCACCCCTCGCTCGTTCGTCAAGCCCTGTCCA
ATCTTCTAAACTCGCACCGCATCGGACTGTTCCCCCTCATCCTTACTGCT
GTCATCTGTCTCTTCTTCTCCACCATCTTCCACGCATTTTGGGTGCACTC
GCCGCAGGCCTTGCGTCTGTTGGGAAAGCTTGACTTTCTCGGCATCTCGC
TCCTCATCACCGGACATGCCATTTCGGGCATTTACTACGCCTTCTATTGC
ACCCCAACCATTGCGCATCGATACTACACCCTCGTCATTCTGGCCGAGCT
TTTCGCCGTTCCCTGTATATTCGCCCCTGCCTTTGGAACTCCAGCCGCCC
GTCCGTTCCGCGTCTTTGTGTTCGCCGTTCTGGCCAGTACCACCTTGGCC
CCGCTCTTACATTCTATTTGGCTGAATACCGCCGCCCGCTACGACCTCGC
CGTCGGTGTCGGTTCTGCCGCCTCCGCTCTATCCGTGTACGCCATGGGCG
CCATGTTCTACGTCTCTCGTTTTCCAGAATGCTGCCGCGTTGGAATGCAC
GACCGCTTTTTCGCATCTCACCAGCTCCTGCACATTGCTGTTTTGCTGGG
CGTCGGATTTCACCTTTTTGGATGCTGGACGCTTTTGGAGTACCGTCTAG
ACGTTGGCTGTTCCGCCGCCTCCTTTCCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2497895..2498926-

>Gvermi1953.t1 ID=Gvermi1953.t1|Name=Gvermi1953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1032bp|location=Sequence derived from alignment at ScGOVlb_1622:2497895..2498926- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCTCCTCCGCCTCGCGCAAGCGGCGTGATCGCCTGCTCACCAT
CCTCGAGATCCCGTCGTGGATGAGGGACAACGACTTTCTGTACGGCAGCT
ACAGACCCCCGCACCCCTCGCTGCGCAGGATCTTCTTCTCCGCCTTCTTC
ACCTTGCATAACGACACCATCAACATCTGGACGCATGCCGTGGGCTTCGT
CTTCTTCCTGTGCGTCGGCATCTACATCCTCGGTCCCGCAACCTCCGTGC
ACCGCCACATCTCGCGCATGGCCATCGCATGCTCGCAGCGCGCAGCCTCC
ACAACAGCCGACATCCACGCGCACATCAAGGCCATCGGCGTGCCTAATTT
TTGTCTCACCGAGCACCACCACCCCTCGCTCGTTCGTCAAGCCCTGTCCA
ATCTTCTAAACTCGCACCGCATCGGACTGTTCCCCCTCATCCTTACTGCT
GTCATCTGTCTCTTCTTCTCCACCATCTTCCACGCATTTTGGGTGCACTC
GCCGCAGGCCTTGCGTCTGTTGGGAAAGCTTGACTTTCTCGGCATCTCGC
TCCTCATCACCGGACATGCCATTTCGGGCATTTACTACGCCTTCTATTGC
ACCCCAACCATTGCGCATCGATACTACACCCTCGTCATTCTGGCCGAGCT
TTTCGCCGTTCCCTGTATATTCGCCCCTGCCTTTGGAACTCCAGCCGCCC
GTCCGTTCCGCGTCTTTGTGTTCGCCGTTCTGGCCAGTACCACCTTGGCC
CCGCTCTTACATTCTATTTGGCTGAATACCGCCGCCCGCTACGACCTCGC
CGTCGGTGTCGGTTCTGCCGCCTCCGCTCTATCCGTGTACGCCATGGGCG
CCATGTTCTACGTCTCTCGTTTTCCAGAATGCTGCCGCGTTGGAATGCAC
GACCGCTTTTTCGCATCTCACCAGCTCCTGCACATTGCTGTTTTGCTGGG
CGTCGGATTTCACCTTTTTGGATGCTGGACGCTTTTGGAGTACCGTCTAG
ACGTTGGCTGTTCCGCCGCCTCCTTTCCGTAG
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