Gvermi1946.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1946.t1
Unique NameGvermi1946.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length469
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2470780..2472186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005848078.1
Preferred nameTOC86
PFAMsAIG1,TOC159_MAD
Max annot lvl3041|Chlorophyta
Evalue7.33e-09
EggNOG OGs2CMP8@1|root,2QR60@2759|Eukaryota,37MJT@33090|Viridiplantae,34J9U@3041|Chlorophyta
DescriptionTranslocase of chloroplast 159/132, membrane anchor domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1946Gvermi1946Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2470780..2472186 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1946.t1.stop1Gvermi1946.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2470780..2470782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1946.t1.CDS1Gvermi1946.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2470780..2472186 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1946.t1.exon1Gvermi1946.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2470780..2472186 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1946.t1.start1Gvermi1946.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2472184..2472186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1946.t1Gvermi1946.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2470780..2472186 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1946.t1 ID=Gvermi1946.t1|Name=Gvermi1946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=469bp
MASSDEFDEDRVTAALIPLEHCEVPELSDEYVDEDSRSDPVRRKPNVYQI
LGPVPNAALVDATRAWLACHELALEDLPSCKPLCKILGVSDDIKGYRKRY
RLFVEGAWFADIPLENIPTMREIRLERNWPRLICAVAHLARFKDQQQWNA
CLEAAGAVHPTHWRDVMRNESWDGDATVRQMARLVGSHCTIAVAGTQGSG
KSETLRTLLGRQLFSSSHALSYEKDPETLTENERSDLDKRRHLVYINWPS
FPIEENMPFGSSKVALAHVKVEDVVLSFLEIPGMETAFDHVDDNDQEVMH
EFGNLQKVQRDLQGHHPRVVLVVERLDDFEEKPFREHVTKLRRLFGNDMF
YRMIVVLTHGYSYPPGHMSYQVWVFDQILKVRESLRRVWKKCPEVPVVVV
ENSDHCPKENGRRILPDKSDFTQEFLNSLELVLRRGQADFELVPTPLRAW
WELHLLVGVIAVLLLRLR*
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spliced messenger RNA

>Gvermi1946.t1 ID=Gvermi1946.t1|Name=Gvermi1946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at ScGOVlb_1622:2470780..2472186- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCGAGCGATGAATTTGATGAAGATAGGGTAACTGCGGCGCTCAT
TCCTCTGGAGCATTGTGAAGTACCTGAGCTTTCTGACGAATACGTAGACG
AAGATTCACGGTCTGACCCTGTACGCCGAAAACCAAACGTATATCAGATT
CTTGGACCCGTCCCGAACGCAGCACTAGTGGACGCTACGCGCGCATGGTT
GGCATGCCACGAGCTGGCTCTGGAAGATTTACCTTCATGCAAGCCGCTGT
GCAAAATTCTCGGCGTAAGCGATGACATTAAAGGCTATCGAAAGCGGTAT
AGGTTGTTTGTGGAAGGCGCCTGGTTTGCCGACATTCCACTCGAGAACAT
CCCGACTATGCGCGAAATAAGACTCGAGCGAAATTGGCCAAGGCTTATAT
GCGCAGTAGCGCATCTTGCCCGCTTCAAGGATCAACAACAGTGGAATGCA
TGCCTCGAAGCGGCGGGAGCTGTGCATCCAACTCACTGGCGTGACGTTAT
GCGCAACGAGAGCTGGGACGGTGATGCTACAGTCCGTCAAATGGCGCGCC
TGGTCGGCTCACACTGTACAATTGCTGTGGCCGGAACCCAGGGCAGCGGC
AAGTCCGAGACTCTTCGAACCCTTCTTGGTCGGCAGTTGTTTTCATCGTC
ACACGCACTGTCCTACGAGAAAGATCCAGAGACCCTAACAGAAAATGAAC
GTTCCGATCTTGACAAGAGGCGGCATTTGGTATACATCAACTGGCCAAGC
TTTCCCATCGAGGAAAACATGCCCTTTGGGTCATCAAAAGTCGCACTTGC
TCACGTCAAAGTTGAGGACGTGGTTCTTTCTTTCTTGGAAATACCAGGGA
TGGAAACTGCATTCGACCATGTGGATGACAACGATCAAGAGGTGATGCAC
GAATTTGGCAATTTACAAAAGGTTCAACGTGATTTACAGGGACATCATCC
TCGAGTGGTTCTCGTTGTAGAACGTCTAGATGATTTCGAAGAGAAACCAT
TCAGAGAACACGTCACCAAGCTACGACGATTGTTCGGAAATGATATGTTT
TACAGAATGATTGTTGTCCTCACCCATGGCTACTCGTATCCCCCAGGACA
TATGAGCTATCAAGTGTGGGTGTTTGACCAAATCCTAAAGGTGCGGGAGA
GTTTGAGAAGGGTTTGGAAAAAATGCCCAGAGGTTCCCGTCGTGGTAGTG
GAGAACAGCGATCACTGTCCAAAAGAGAACGGGCGCCGTATACTGCCTGA
CAAGAGCGACTTCACTCAAGAGTTTTTGAACAGTTTGGAGCTTGTTCTGC
GAAGGGGGCAAGCGGACTTTGAGTTAGTCCCAACCCCCTTGAGGGCGTGG
TGGGAGTTACATTTGCTGGTTGGGGTGATTGCAGTGCTTTTACTGCGCCT
TCGGTGA
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protein sequence of Gvermi1946.t1

>Gvermi1946.t1 ID=Gvermi1946.t1|Name=Gvermi1946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=469bp
MASSDEFDEDRVTAALIPLEHCEVPELSDEYVDEDSRSDPVRRKPNVYQI
LGPVPNAALVDATRAWLACHELALEDLPSCKPLCKILGVSDDIKGYRKRY
RLFVEGAWFADIPLENIPTMREIRLERNWPRLICAVAHLARFKDQQQWNA
CLEAAGAVHPTHWRDVMRNESWDGDATVRQMARLVGSHCTIAVAGTQGSG
KSETLRTLLGRQLFSSSHALSYEKDPETLTENERSDLDKRRHLVYINWPS
FPIEENMPFGSSKVALAHVKVEDVVLSFLEIPGMETAFDHVDDNDQEVMH
EFGNLQKVQRDLQGHHPRVVLVVERLDDFEEKPFREHVTKLRRLFGNDMF
YRMIVVLTHGYSYPPGHMSYQVWVFDQILKVRESLRRVWKKCPEVPVVVV
ENSDHCPKENGRRILPDKSDFTQEFLNSLELVLRRGQADFELVPTPLRAW
WELHLLVGVIAVLLLRLR*
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mRNA from alignment at ScGOVlb_1622:2470780..2472186-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1946.t1 ID=Gvermi1946.t1|Name=Gvermi1946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at ScGOVlb_1622:2470780..2472186- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCGAGCGATGAATTTGATGAAGATAGGGTAACTGCGGCGCTCAT
TCCTCTGGAGCATTGTGAAGTACCTGAGCTTTCTGACGAATACGTAGACG
AAGATTCACGGTCTGACCCTGTACGCCGAAAACCAAACGTATATCAGATT
CTTGGACCCGTCCCGAACGCAGCACTAGTGGACGCTACGCGCGCATGGTT
GGCATGCCACGAGCTGGCTCTGGAAGATTTACCTTCATGCAAGCCGCTGT
GCAAAATTCTCGGCGTAAGCGATGACATTAAAGGCTATCGAAAGCGGTAT
AGGTTGTTTGTGGAAGGCGCCTGGTTTGCCGACATTCCACTCGAGAACAT
CCCGACTATGCGCGAAATAAGACTCGAGCGAAATTGGCCAAGGCTTATAT
GCGCAGTAGCGCATCTTGCCCGCTTCAAGGATCAACAACAGTGGAATGCA
TGCCTCGAAGCGGCGGGAGCTGTGCATCCAACTCACTGGCGTGACGTTAT
GCGCAACGAGAGCTGGGACGGTGATGCTACAGTCCGTCAAATGGCGCGCC
TGGTCGGCTCACACTGTACAATTGCTGTGGCCGGAACCCAGGGCAGCGGC
AAGTCCGAGACTCTTCGAACCCTTCTTGGTCGGCAGTTGTTTTCATCGTC
ACACGCACTGTCCTACGAGAAAGATCCAGAGACCCTAACAGAAAATGAAC
GTTCCGATCTTGACAAGAGGCGGCATTTGGTATACATCAACTGGCCAAGC
TTTCCCATCGAGGAAAACATGCCCTTTGGGTCATCAAAAGTCGCACTTGC
TCACGTCAAAGTTGAGGACGTGGTTCTTTCTTTCTTGGAAATACCAGGGA
TGGAAACTGCATTCGACCATGTGGATGACAACGATCAAGAGGTGATGCAC
GAATTTGGCAATTTACAAAAGGTTCAACGTGATTTACAGGGACATCATCC
TCGAGTGGTTCTCGTTGTAGAACGTCTAGATGATTTCGAAGAGAAACCAT
TCAGAGAACACGTCACCAAGCTACGACGATTGTTCGGAAATGATATGTTT
TACAGAATGATTGTTGTCCTCACCCATGGCTACTCGTATCCCCCAGGACA
TATGAGCTATCAAGTGTGGGTGTTTGACCAAATCCTAAAGGTGCGGGAGA
GTTTGAGAAGGGTTTGGAAAAAATGCCCAGAGGTTCCCGTCGTGGTAGTG
GAGAACAGCGATCACTGTCCAAAAGAGAACGGGCGCCGTATACTGCCTGA
CAAGAGCGACTTCACTCAAGAGTTTTTGAACAGTTTGGAGCTTGTTCTGC
GAAGGGGGCAAGCGGACTTTGAGTTAGTCCCAACCCCCTTGAGGGCGTGG
TGGGAGTTACATTTGCTGGTTGGGGTGATTGCAGTGCTTTTACTGCGCCT
TCGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2470780..2472186-

>Gvermi1946.t1 ID=Gvermi1946.t1|Name=Gvermi1946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1407bp|location=Sequence derived from alignment at ScGOVlb_1622:2470780..2472186- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCGAGCGATGAATTTGATGAAGATAGGGTAACTGCGGCGCTCAT
TCCTCTGGAGCATTGTGAAGTACCTGAGCTTTCTGACGAATACGTAGACG
AAGATTCACGGTCTGACCCTGTACGCCGAAAACCAAACGTATATCAGATT
CTTGGACCCGTCCCGAACGCAGCACTAGTGGACGCTACGCGCGCATGGTT
GGCATGCCACGAGCTGGCTCTGGAAGATTTACCTTCATGCAAGCCGCTGT
GCAAAATTCTCGGCGTAAGCGATGACATTAAAGGCTATCGAAAGCGGTAT
AGGTTGTTTGTGGAAGGCGCCTGGTTTGCCGACATTCCACTCGAGAACAT
CCCGACTATGCGCGAAATAAGACTCGAGCGAAATTGGCCAAGGCTTATAT
GCGCAGTAGCGCATCTTGCCCGCTTCAAGGATCAACAACAGTGGAATGCA
TGCCTCGAAGCGGCGGGAGCTGTGCATCCAACTCACTGGCGTGACGTTAT
GCGCAACGAGAGCTGGGACGGTGATGCTACAGTCCGTCAAATGGCGCGCC
TGGTCGGCTCACACTGTACAATTGCTGTGGCCGGAACCCAGGGCAGCGGC
AAGTCCGAGACTCTTCGAACCCTTCTTGGTCGGCAGTTGTTTTCATCGTC
ACACGCACTGTCCTACGAGAAAGATCCAGAGACCCTAACAGAAAATGAAC
GTTCCGATCTTGACAAGAGGCGGCATTTGGTATACATCAACTGGCCAAGC
TTTCCCATCGAGGAAAACATGCCCTTTGGGTCATCAAAAGTCGCACTTGC
TCACGTCAAAGTTGAGGACGTGGTTCTTTCTTTCTTGGAAATACCAGGGA
TGGAAACTGCATTCGACCATGTGGATGACAACGATCAAGAGGTGATGCAC
GAATTTGGCAATTTACAAAAGGTTCAACGTGATTTACAGGGACATCATCC
TCGAGTGGTTCTCGTTGTAGAACGTCTAGATGATTTCGAAGAGAAACCAT
TCAGAGAACACGTCACCAAGCTACGACGATTGTTCGGAAATGATATGTTT
TACAGAATGATTGTTGTCCTCACCCATGGCTACTCGTATCCCCCAGGACA
TATGAGCTATCAAGTGTGGGTGTTTGACCAAATCCTAAAGGTGCGGGAGA
GTTTGAGAAGGGTTTGGAAAAAATGCCCAGAGGTTCCCGTCGTGGTAGTG
GAGAACAGCGATCACTGTCCAAAAGAGAACGGGCGCCGTATACTGCCTGA
CAAGAGCGACTTCACTCAAGAGTTTTTGAACAGTTTGGAGCTTGTTCTGC
GAAGGGGGCAAGCGGACTTTGAGTTAGTCCCAACCCCCTTGAGGGCGTGG
TGGGAGTTACATTTGCTGGTTGGGGTGATTGCAGTGCTTTTACTGCGCCT
TCGGTGA
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