Gvermi1921.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1921.t1
Unique NameGvermi1921.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2316507..2316973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1921Gvermi1921Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2316507..2316973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1921.t1Gvermi1921.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2316507..2316973 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1921.t1.stop1Gvermi1921.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2316507..2316509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1921.t1.CDS1Gvermi1921.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2316507..2316759 -
Gvermi1921.t1.CDS2Gvermi1921.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2316861..2316973 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1921.t1.exon1Gvermi1921.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2316507..2316759 -
Gvermi1921.t1.exon2Gvermi1921.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2316861..2316973 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1921.t1.intron1Gvermi1921.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 2316760..2316860 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1921.t1.start1Gvermi1921.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2316971..2316973 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1921.t1 ID=Gvermi1921.t1|Name=Gvermi1921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=122bp
MEEDSRKWYNICKEGFIVMSELEDGPLLSVTSSRSTRKGLAHIDGRMEVH
ETPSRVPAMVSIRSTVDDSVLRVRNASVESKVEPVEDELRVPSSLLALLL
ESGPPDKTLREQSIIARAQAN*
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spliced messenger RNA

>Gvermi1921.t1 ID=Gvermi1921.t1|Name=Gvermi1921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp|location=Sequence derived from alignment at ScGOVlb_1622:2316507..2316973- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAAGATAGTCGCAAATGGTACAATATCTGCAAGGAAGGCTTTAT
TGTCATGTCTGAGTTGGAGGATGGGCCACTGCTTTCTGTCACTTCATCTC
GATCTACGCGGAAAGGCTTAGCCCATATTGATGGGCGAATGGAAGTACAT
GAAACGCCTTCTAGAGTACCTGCCATGGTTTCAATTCGATCAACTGTTGA
TGACTCTGTTCTTCGCGTTCGAAATGCCAGCGTTGAGTCAAAAGTAGAGC
CAGTCGAGGATGAGCTGCGTGTCCCTTCATCTCTTCTCGCGCTTCTTCTT
GAAAGTGGACCTCCGGATAAAACACTTCGCGAGCAATCGATCATAGCACG
GGCCCAAGCAAATTAA
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protein sequence of Gvermi1921.t1

>Gvermi1921.t1 ID=Gvermi1921.t1|Name=Gvermi1921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=122bp
MEEDSRKWYNICKEGFIVMSELEDGPLLSVTSSRSTRKGLAHIDGRMEVH
ETPSRVPAMVSIRSTVDDSVLRVRNASVESKVEPVEDELRVPSSLLALLL
ESGPPDKTLREQSIIARAQAN*
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mRNA from alignment at ScGOVlb_1622:2316507..2316973-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1921.t1 ID=Gvermi1921.t1|Name=Gvermi1921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=467bp|location=Sequence derived from alignment at ScGOVlb_1622:2316507..2316973- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGAAGATAGTCGCAAATGGTACAATATCTGCAAGGAAGGCTTTAT
TGTCATGTCTGAGTTGGAGGATGGGCCACTGCTTTCTGTCACTTCATCTC
GATCTACGCGGAAGTGCGACGAAATGGTTCAGATAATTCTGGAGAAGGAT
TTACGTCGTCTGGACGAGCTCTAGAGCACGTTTTTATCGTGAATGTCCGC
GATGATCATATCAGAGGCTTAGCCCATATTGATGGGCGAATGGAAGTACA
TGAAACGCCTTCTAGAGTACCTGCCATGGTTTCAATTCGATCAACTGTTG
ATGACTCTGTTCTTCGCGTTCGAAATGCCAGCGTTGAGTCAAAAGTAGAG
CCAGTCGAGGATGAGCTGCGTGTCCCTTCATCTCTTCTCGCGCTTCTTCT
TGAAAGTGGACCTCCGGATAAAACACTTCGCGAGCAATCGATCATAGCAC
GGGCCCAAGCAAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2316507..2316973-

>Gvermi1921.t1 ID=Gvermi1921.t1|Name=Gvermi1921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=366bp|location=Sequence derived from alignment at ScGOVlb_1622:2316507..2316973- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGAAGATAGTCGCAAATGGTACAATATCTGCAAGGAAGGCTTTAT
TGTCATGTCTGAGTTGGAGGATGGGCCACTGCTTTCTGTCACTTCATCTC
GATCTACGCGGAAAGGCTTAGCCCATATTGATGGGCGAATGGAAGTACAT
GAAACGCCTTCTAGAGTACCTGCCATGGTTTCAATTCGATCAACTGTTGA
TGACTCTGTTCTTCGCGTTCGAAATGCCAGCGTTGAGTCAAAAGTAGAGC
CAGTCGAGGATGAGCTGCGTGTCCCTTCATCTCTTCTCGCGCTTCTTCTT
GAAAGTGGACCTCCGGATAAAACACTTCGCGAGCAATCGATCATAGCACG
GGCCCAAGCAAATTAA
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