Gvermi1918.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1918.t1
Unique NameGvermi1918.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2291530..2292807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009037962.1
PFAMsAbhydrolase_1
Max annot lvl2759|Eukaryota
Evalue0.000193
EggNOG OGsCOG0596@1|root,KOG4178@2759|Eukaryota
Description10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1918Gvermi1918Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2291530..2292807 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1918.t1.start1Gvermi1918.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2291530..2291532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1918.t1.CDS1Gvermi1918.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2291530..2292807 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1918.t1.exon1Gvermi1918.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2291530..2292807 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1918.t1.stop1Gvermi1918.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2292805..2292807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1918.t1Gvermi1918.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2291530..2292807 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1918.t1 ID=Gvermi1918.t1|Name=Gvermi1918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=426bp
MGRSDAPYAGIRGGPGYNAKELAYDCWDVVDAVRAMRARSDAHSDADTDD
ELEPLNHEIAVVGHSMGGMIAQHMLFLRPSQVRFVALLSTHAGGLWNLIP
TSRMMYGAFKVAWSGFDRDVHAAVNLSLHFTQKFLDGWVGDRHHHSGPAA
SKSQNEEQPKHKHAEKSSFGKQHNNISHSSDSDSSTSPHSFQSPPNSPPP
TKPMAPPPSGNHRTLLSTTEGIGFVESKLLELAHDAQIHFGLTRNALTRA
LWKPRRALFRAIAKQQRRARRRFDIYHAKYAGREISPEDHNPKEASSDAL
SSPQDSPYAMYGHAAVVRSHYLDSSFARRLRDCSRILKLVILGRHDKVVT
PAASRRLANAVGADTVVEVDAAHFITDEAAAEVTMLIVYGIRQAFFSQPA
RKCCCNWCRKDVINNPKEEPSCRMC*
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spliced messenger RNA

>Gvermi1918.t1 ID=Gvermi1918.t1|Name=Gvermi1918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at ScGOVlb_1622:2291530..2292807+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGCTCAGACGCTCCTTACGCTGGTATAAGGGGCGGCCCGGGCTA
CAATGCCAAAGAGCTCGCGTACGATTGCTGGGATGTCGTCGACGCTGTGC
GTGCCATGAGGGCGCGCAGCGATGCTCACTCTGATGCCGACACTGATGAC
GAACTCGAACCCTTGAACCACGAGATTGCTGTCGTTGGACATTCCATGGG
AGGTATGATTGCGCAGCACATGCTTTTCCTACGACCCAGTCAAGTTCGTT
TTGTCGCACTTCTGTCAACCCACGCAGGCGGTCTGTGGAATCTCATTCCC
ACGAGCAGAATGATGTACGGCGCCTTCAAAGTCGCTTGGAGCGGGTTTGA
TAGAGACGTCCACGCTGCCGTTAATCTTTCGTTGCACTTCACGCAAAAGT
TCTTGGATGGCTGGGTTGGCGATCGGCACCATCACTCGGGACCAGCGGCG
TCCAAGTCGCAGAACGAAGAGCAACCGAAACACAAACATGCAGAAAAGTC
ATCCTTCGGCAAACAGCACAATAACATTTCCCACTCCTCTGATTCTGATT
CTTCAACCAGCCCACATTCTTTTCAATCCCCACCAAACTCTCCACCGCCC
ACGAAACCCATGGCACCACCACCGTCTGGTAATCATCGTACTTTGCTATC
TACCACTGAAGGCATTGGCTTCGTTGAATCGAAGCTCCTTGAACTTGCCC
ACGACGCCCAAATTCATTTCGGCCTAACTCGAAATGCTCTCACACGCGCG
CTATGGAAGCCGCGGAGGGCGCTTTTCCGTGCAATAGCCAAGCAACAACG
CCGCGCTCGGCGAAGATTCGACATTTATCATGCAAAGTACGCTGGTCGTG
AAATCAGTCCTGAAGATCACAATCCCAAAGAAGCGAGCTCCGATGCACTA
TCCAGTCCACAAGACTCCCCGTATGCAATGTACGGGCATGCTGCCGTAGT
CCGGTCCCACTATCTCGACTCAAGCTTCGCCCGAAGACTAAGAGATTGTT
CAAGGATACTGAAACTGGTAATTTTGGGAAGACATGACAAAGTCGTCACT
CCAGCCGCGTCAAGACGCCTTGCAAACGCCGTGGGCGCCGACACCGTAGT
TGAAGTCGATGCAGCGCATTTTATCACCGATGAGGCTGCTGCAGAAGTTA
CAATGCTTATCGTGTACGGAATTCGGCAAGCATTCTTTTCCCAACCCGCA
AGAAAATGCTGTTGTAACTGGTGCCGAAAAGATGTCATCAACAATCCAAA
AGAAGAGCCATCATGTCGAATGTGTTAA
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protein sequence of Gvermi1918.t1

>Gvermi1918.t1 ID=Gvermi1918.t1|Name=Gvermi1918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=426bp
MGRSDAPYAGIRGGPGYNAKELAYDCWDVVDAVRAMRARSDAHSDADTDD
ELEPLNHEIAVVGHSMGGMIAQHMLFLRPSQVRFVALLSTHAGGLWNLIP
TSRMMYGAFKVAWSGFDRDVHAAVNLSLHFTQKFLDGWVGDRHHHSGPAA
SKSQNEEQPKHKHAEKSSFGKQHNNISHSSDSDSSTSPHSFQSPPNSPPP
TKPMAPPPSGNHRTLLSTTEGIGFVESKLLELAHDAQIHFGLTRNALTRA
LWKPRRALFRAIAKQQRRARRRFDIYHAKYAGREISPEDHNPKEASSDAL
SSPQDSPYAMYGHAAVVRSHYLDSSFARRLRDCSRILKLVILGRHDKVVT
PAASRRLANAVGADTVVEVDAAHFITDEAAAEVTMLIVYGIRQAFFSQPA
RKCCCNWCRKDVINNPKEEPSCRMC*
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mRNA from alignment at ScGOVlb_1622:2291530..2292807+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1918.t1 ID=Gvermi1918.t1|Name=Gvermi1918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at ScGOVlb_1622:2291530..2292807+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACGCTCAGACGCTCCTTACGCTGGTATAAGGGGCGGCCCGGGCTA
CAATGCCAAAGAGCTCGCGTACGATTGCTGGGATGTCGTCGACGCTGTGC
GTGCCATGAGGGCGCGCAGCGATGCTCACTCTGATGCCGACACTGATGAC
GAACTCGAACCCTTGAACCACGAGATTGCTGTCGTTGGACATTCCATGGG
AGGTATGATTGCGCAGCACATGCTTTTCCTACGACCCAGTCAAGTTCGTT
TTGTCGCACTTCTGTCAACCCACGCAGGCGGTCTGTGGAATCTCATTCCC
ACGAGCAGAATGATGTACGGCGCCTTCAAAGTCGCTTGGAGCGGGTTTGA
TAGAGACGTCCACGCTGCCGTTAATCTTTCGTTGCACTTCACGCAAAAGT
TCTTGGATGGCTGGGTTGGCGATCGGCACCATCACTCGGGACCAGCGGCG
TCCAAGTCGCAGAACGAAGAGCAACCGAAACACAAACATGCAGAAAAGTC
ATCCTTCGGCAAACAGCACAATAACATTTCCCACTCCTCTGATTCTGATT
CTTCAACCAGCCCACATTCTTTTCAATCCCCACCAAACTCTCCACCGCCC
ACGAAACCCATGGCACCACCACCGTCTGGTAATCATCGTACTTTGCTATC
TACCACTGAAGGCATTGGCTTCGTTGAATCGAAGCTCCTTGAACTTGCCC
ACGACGCCCAAATTCATTTCGGCCTAACTCGAAATGCTCTCACACGCGCG
CTATGGAAGCCGCGGAGGGCGCTTTTCCGTGCAATAGCCAAGCAACAACG
CCGCGCTCGGCGAAGATTCGACATTTATCATGCAAAGTACGCTGGTCGTG
AAATCAGTCCTGAAGATCACAATCCCAAAGAAGCGAGCTCCGATGCACTA
TCCAGTCCACAAGACTCCCCGTATGCAATGTACGGGCATGCTGCCGTAGT
CCGGTCCCACTATCTCGACTCAAGCTTCGCCCGAAGACTAAGAGATTGTT
CAAGGATACTGAAACTGGTAATTTTGGGAAGACATGACAAAGTCGTCACT
CCAGCCGCGTCAAGACGCCTTGCAAACGCCGTGGGCGCCGACACCGTAGT
TGAAGTCGATGCAGCGCATTTTATCACCGATGAGGCTGCTGCAGAAGTTA
CAATGCTTATCGTGTACGGAATTCGGCAAGCATTCTTTTCCCAACCCGCA
AGAAAATGCTGTTGTAACTGGTGCCGAAAAGATGTCATCAACAATCCAAA
AGAAGAGCCATCATGTCGAATGTGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2291530..2292807+

>Gvermi1918.t1 ID=Gvermi1918.t1|Name=Gvermi1918.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1278bp|location=Sequence derived from alignment at ScGOVlb_1622:2291530..2292807+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACGCTCAGACGCTCCTTACGCTGGTATAAGGGGCGGCCCGGGCTA
CAATGCCAAAGAGCTCGCGTACGATTGCTGGGATGTCGTCGACGCTGTGC
GTGCCATGAGGGCGCGCAGCGATGCTCACTCTGATGCCGACACTGATGAC
GAACTCGAACCCTTGAACCACGAGATTGCTGTCGTTGGACATTCCATGGG
AGGTATGATTGCGCAGCACATGCTTTTCCTACGACCCAGTCAAGTTCGTT
TTGTCGCACTTCTGTCAACCCACGCAGGCGGTCTGTGGAATCTCATTCCC
ACGAGCAGAATGATGTACGGCGCCTTCAAAGTCGCTTGGAGCGGGTTTGA
TAGAGACGTCCACGCTGCCGTTAATCTTTCGTTGCACTTCACGCAAAAGT
TCTTGGATGGCTGGGTTGGCGATCGGCACCATCACTCGGGACCAGCGGCG
TCCAAGTCGCAGAACGAAGAGCAACCGAAACACAAACATGCAGAAAAGTC
ATCCTTCGGCAAACAGCACAATAACATTTCCCACTCCTCTGATTCTGATT
CTTCAACCAGCCCACATTCTTTTCAATCCCCACCAAACTCTCCACCGCCC
ACGAAACCCATGGCACCACCACCGTCTGGTAATCATCGTACTTTGCTATC
TACCACTGAAGGCATTGGCTTCGTTGAATCGAAGCTCCTTGAACTTGCCC
ACGACGCCCAAATTCATTTCGGCCTAACTCGAAATGCTCTCACACGCGCG
CTATGGAAGCCGCGGAGGGCGCTTTTCCGTGCAATAGCCAAGCAACAACG
CCGCGCTCGGCGAAGATTCGACATTTATCATGCAAAGTACGCTGGTCGTG
AAATCAGTCCTGAAGATCACAATCCCAAAGAAGCGAGCTCCGATGCACTA
TCCAGTCCACAAGACTCCCCGTATGCAATGTACGGGCATGCTGCCGTAGT
CCGGTCCCACTATCTCGACTCAAGCTTCGCCCGAAGACTAAGAGATTGTT
CAAGGATACTGAAACTGGTAATTTTGGGAAGACATGACAAAGTCGTCACT
CCAGCCGCGTCAAGACGCCTTGCAAACGCCGTGGGCGCCGACACCGTAGT
TGAAGTCGATGCAGCGCATTTTATCACCGATGAGGCTGCTGCAGAAGTTA
CAATGCTTATCGTGTACGGAATTCGGCAAGCATTCTTTTCCCAACCCGCA
AGAAAATGCTGTTGTAACTGGTGCCGAAAAGATGTCATCAACAATCCAAA
AGAAGAGCCATCATGTCGAATGTGTTAA
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