Gvermi1890.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1890.t2
Unique NameGvermi1890.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:1343085..1343513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog471854.Dfer_0851
Max annot lvl976|Bacteroidetes
Evalue6.59e-16
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,4P26M@976|Bacteroidetes,47TC4@768503|Cytophagia
Descriptioncalcium- and calmodulin-responsive adenylate cyclase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1890Gvermi1890Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 1343085..1343513 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1890.t2.stop1Gvermi1890.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 1343085..1343087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1890.t2.CDS1Gvermi1890.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1343085..1343513 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1890.t2.exon1Gvermi1890.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1343085..1343513 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1890.t2.start1Gvermi1890.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 1343511..1343513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1890.t2Gvermi1890.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 1343085..1343513 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1890.t2 ID=Gvermi1890.t2|Name=Gvermi1890.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=143bp
LLPSFVIEQFRRFSLQRLFTPVLSNHLTVKFQIPAAPDVAKVSGFGAVFT
DVDLPHYTKMVYLDENNCQIANVVVPTKNKGLSFAGLVVVDPHDPKKTLP
VVSKVRVQLGNISIRGFFRRHIHRFFKDIVVMDDLFYGEPMH*
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spliced messenger RNA

>Gvermi1890.t2 ID=Gvermi1890.t2|Name=Gvermi1890.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_1622:1343085..1343513- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTCCGTCCTTTGTGATCGAGCAGTTCCGCCGCTTTTCGCTCCAGCG
CCTTTTCACGCCAGTGCTTTCCAACCACCTCACAGTCAAGTTTCAGATCC
CCGCGGCCCCCGATGTGGCCAAGGTGAGTGGGTTTGGAGCGGTATTTACA
GACGTCGATCTTCCGCATTACACAAAAATGGTGTATTTAGATGAAAACAA
CTGCCAGATTGCAAACGTTGTAGTACCCACAAAGAACAAAGGCCTCAGCT
TTGCTGGTCTGGTGGTTGTTGATCCTCACGACCCCAAAAAGACTCTACCC
GTTGTTTCCAAGGTCCGCGTGCAACTGGGAAACATTTCGATTCGAGGCTT
CTTCCGTCGCCACATTCATCGCTTCTTCAAGGACATAGTTGTGATGGATG
ACCTCTTCTACGGGGAGCCCATGCACTAA
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protein sequence of Gvermi1890.t2

>Gvermi1890.t2 ID=Gvermi1890.t2|Name=Gvermi1890.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=143bp
LLPSFVIEQFRRFSLQRLFTPVLSNHLTVKFQIPAAPDVAKVSGFGAVFT
DVDLPHYTKMVYLDENNCQIANVVVPTKNKGLSFAGLVVVDPHDPKKTLP
VVSKVRVQLGNISIRGFFRRHIHRFFKDIVVMDDLFYGEPMH*
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mRNA from alignment at ScGOVlb_1622:1343085..1343513-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1890.t2 ID=Gvermi1890.t2|Name=Gvermi1890.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_1622:1343085..1343513- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTTCCGTCCTTTGTGATCGAGCAGTTCCGCCGCTTTTCGCTCCAGCG
CCTTTTCACGCCAGTGCTTTCCAACCACCTCACAGTCAAGTTTCAGATCC
CCGCGGCCCCCGATGTGGCCAAGGTGAGTGGGTTTGGAGCGGTATTTACA
GACGTCGATCTTCCGCATTACACAAAAATGGTGTATTTAGATGAAAACAA
CTGCCAGATTGCAAACGTTGTAGTACCCACAAAGAACAAAGGCCTCAGCT
TTGCTGGTCTGGTGGTTGTTGATCCTCACGACCCCAAAAAGACTCTACCC
GTTGTTTCCAAGGTCCGCGTGCAACTGGGAAACATTTCGATTCGAGGCTT
CTTCCGTCGCCACATTCATCGCTTCTTCAAGGACATAGTTGTGATGGATG
ACCTCTTCTACGGGGAGCCCATGCACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:1343085..1343513-

>Gvermi1890.t2 ID=Gvermi1890.t2|Name=Gvermi1890.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=429bp|location=Sequence derived from alignment at ScGOVlb_1622:1343085..1343513- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTTCCGTCCTTTGTGATCGAGCAGTTCCGCCGCTTTTCGCTCCAGCG
CCTTTTCACGCCAGTGCTTTCCAACCACCTCACAGTCAAGTTTCAGATCC
CCGCGGCCCCCGATGTGGCCAAGGTGAGTGGGTTTGGAGCGGTATTTACA
GACGTCGATCTTCCGCATTACACAAAAATGGTGTATTTAGATGAAAACAA
CTGCCAGATTGCAAACGTTGTAGTACCCACAAAGAACAAAGGCCTCAGCT
TTGCTGGTCTGGTGGTTGTTGATCCTCACGACCCCAAAAAGACTCTACCC
GTTGTTTCCAAGGTCCGCGTGCAACTGGGAAACATTTCGATTCGAGGCTT
CTTCCGTCGCCACATTCATCGCTTCTTCAAGGACATAGTTGTGATGGATG
ACCTCTTCTACGGGGAGCCCATGCACTAA
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