Gvermi1886.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi1886.t1
Unique Name	Gvermi1886.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	741

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1622	contig	ScGOVlb_1622:1207304..1209613 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN19256
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K11267
Evalue	2.85e-08
EggNOG OGs	KOG1525@1\|root,KOG1525@2759\|Eukaryota,37KXZ@33090\|Viridiplantae,3G77Y@35493\|Streptophyta
Description	Sister chromatid cohesion protein PDS5 homolog
COG category	D
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi1886	Gvermi1886	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1622 1207304..1209613 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1886.t1	Gvermi1886.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1622 1207304..1209613 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1886.t1.start1	Gvermi1886.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1622 1207304..1207306 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1886.t1.CDS1	Gvermi1886.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1622 1207304..1208612 +
Gvermi1886.t1.CDS2	Gvermi1886.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1622 1208700..1209613 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1886.t1.exon1	Gvermi1886.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1622 1207304..1208612 +
Gvermi1886.t1.exon2	Gvermi1886.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1622 1208700..1209613 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1886.t1.intron1	Gvermi1886.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_1622 1208613..1208699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1886.t1.stop1	Gvermi1886.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1622 1209611..1209613 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1622:1207304..1209613+
coding sequence from alignment at ScGOVlb_1622:1207304..1209613+

mRNA sequence

>Gvermi1886.t1 ID=Gvermi1886.t1|Name=Gvermi1886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=741bp
MGPESSNNLPSRPRFSWDIRTVPWTDGRGNQEQYAEAVSXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXQNKLILPPDANGNSQGSITLVDRDMHT
YIPHQVFTFRTSGITGDNESTLFCASAHIEGDIAKKPWTDVKKIVDKVHK
HVCGHSTYSDIRVLLERNKLWNEQGEKYLHSVLERCTACLTTAKPKSSRK
VSLSAMTRSFNNLVCVDHLFLDQYCVMHAMDAASRYYAGAVVEDTSMWRA
ILFFDAHWVTPFWTPQVVAYDRGLNNSVFMEYLQAQDIGTRPLPPRRHSK
NVLESKHRIIRDVFLRLQEASKNDKHKWTDKLLVQQTIRISNDLYGSDIL
AGQELVKGYARPVEAGSVPKLLSQDLIDAYQKLLAKRKLTFILQSKTFEE
ASIADGDMVQVFVKNYHDKRGKWSDNRPVLAYDVADPTAVQDAIDELDRN
LEEVVQELNNDTMSEEHNSAAHQNKPTRNSDEELDCIGPNLPKVGERIEV
YWPIDKKFYEGTVHQHEEESGKFSVHYDDGDEEKLTLENEVWNYVREAPN
AAQTAAETHDVDRKQAGEVQLSPGQELESSEKKLIETYYKAFGHGEFMLH
QAQGLPPYATQNAYNKEERSFKKIVRDVAVSQVPKTANIVTSHVFYKVKR
CDDTSLTLKARIAVHGNKDLDKDILKTDWATCPPVGIRILRSQSTTSCHS
CKSSWPTSTVVTAKQGTSSSSTGSASPFVGSRNKASACVL*

spliced messenger RNA

>Gvermi1886.t1 ID=Gvermi1886.t1|Name=Gvermi1886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2223bp|location=Sequence derived from alignment at ScGOVlb_1622:1207304..1209613+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgggcccagaaagctctaacaacttgccgtctaggccgcgcttttcgtg
ggacattcgaacggttccgtggacagatggacgcggaaatcaggagcagt
acgcagaagccgtttcTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaccagaacaagttaattctaccaccggatgcta
acgggaattcgcaaggcagtatcacgcttgttgacagggatatgcacaca
tacataccccaccaggtgttcacgtttcgtaccagtggtattactgggga
taacgagagcaccttgttttgtgcgtctgcgcatatcgaaggcgatatag
cgaagaaaccttggacggatgttaagaagatcgtggacaaggttcacaag
cacgtctgcggacactctacatactcagacataagggtgttgttagagag
aaacaagctgtggaatgagcagggcgagaagtacttgcattcagtcctcg
agagatgtacagcgtgtctaactacggccaagcccaagtcgagccgaaag
gtgtccctcagtgcaatgactaggtccttcaacaatctggtgtgtgtgga
ccacttgtttctcgatcagtactgcgttatgcacgctatggacgctgcat
cccgttactacgcgggtgctgtcgtcgaagatacgtcgatgtggcgagca
atcctgtttttcgacgcgcactgggtaactccgttttggacgccgcaggt
tgttgcctacgacagaggcttgaacaacagcgtcttcatggagtacttgc
aagctcaggatataggtacaagaccgctccccccgcgcagacacagtaag
aatgtgctggagtctaaacacaggatcatccgcgatgtttttttgcgact
gcaggaagcgtcgaaaaacgacaagcataaatggacagacaagctgctcg
ttcaacaaaccatcaggatatctaacgatctgtatggcagtgacatactg
gccggccaagagctggtaaagggctacgcaaggcctgttgaggctggctc
tgtgccaaaactgctgtcgcaggatctcatcgatgcttaccagaagttgc
tggccaagcgtaagttgacattcatcctccaatcgaagacattcgaagaa
gcctcgatagccgatggcgatatggtccaggtttttgtgaagaactacca
cgacaaacggggcaaatggtctgacaacagaccagtcctagcatacgatg
tcgccgaccctaccgctgtgcaagatgctattgacgagttggatagaaac
cttgaagaggttgtacaggagttgaacaatgacacaatgtccgaggaaca
caattcagccgcacatcagaacaaacctacccgtaacagcgatgaagaac
tggactgcattggacctaatttaccgaaggtcggggagagaatcgaagtt
tactggccaatcgacaagaagttttacgaagggactgtgcatcaacacga
agaggagtcaggtaagttctccgtccactatgacgacggcgatgaagaga
agttgactctggaaaacgaagtatggaattatgtcagggaagcgcccaac
gcagcacagaccgcagcagaaacgcatgacgtcgatcgcaagcaagccgg
ggaggtgcagttgtcaccgggacaggagctggaaagctctgagaaaaagc
tcatcgaaacttactacaaagcgtttggccacggggagttcatgctacat
caggcgcaaggactaccgccctacgcaactcaaaacgcttataacaagga
ggaacggtcgttcaagaagatcgttcgcgatgtcgcagtttcccaggtgc
ccaaaaccgcaaatatagtcacaagccatgtgttttacaaggtcaaacgg
tgcgatgatacttccctcacgctcaaggcacgtattgctgtccatggtaa
caaggaccttgacaaggacattctgaagacagactgggcaacttgcccac
cagttggcatacgaatattgcggtcccagtccacaacttcttgccattcc
tgcaagtcctcttggccgacctcgactgttgtcactgcaaagcagggtac
ctcgtcgtcatcgacgggtagcgcttcgccattcgtgggtagccgcaaca
aggcatcggcttgcgtgttgtag

protein sequence of Gvermi1886.t1

>Gvermi1886.t1 ID=Gvermi1886.t1|Name=Gvermi1886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=741bp
MGPESSNNLPSRPRFSWDIRTVPWTDGRGNQEQYAEAVSXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXQNKLILPPDANGNSQGSITLVDRDMHT
YIPHQVFTFRTSGITGDNESTLFCASAHIEGDIAKKPWTDVKKIVDKVHK
HVCGHSTYSDIRVLLERNKLWNEQGEKYLHSVLERCTACLTTAKPKSSRK
VSLSAMTRSFNNLVCVDHLFLDQYCVMHAMDAASRYYAGAVVEDTSMWRA
ILFFDAHWVTPFWTPQVVAYDRGLNNSVFMEYLQAQDIGTRPLPPRRHSK
NVLESKHRIIRDVFLRLQEASKNDKHKWTDKLLVQQTIRISNDLYGSDIL
AGQELVKGYARPVEAGSVPKLLSQDLIDAYQKLLAKRKLTFILQSKTFEE
ASIADGDMVQVFVKNYHDKRGKWSDNRPVLAYDVADPTAVQDAIDELDRN
LEEVVQELNNDTMSEEHNSAAHQNKPTRNSDEELDCIGPNLPKVGERIEV
YWPIDKKFYEGTVHQHEEESGKFSVHYDDGDEEKLTLENEVWNYVREAPN
AAQTAAETHDVDRKQAGEVQLSPGQELESSEKKLIETYYKAFGHGEFMLH
QAQGLPPYATQNAYNKEERSFKKIVRDVAVSQVPKTANIVTSHVFYKVKR
CDDTSLTLKARIAVHGNKDLDKDILKTDWATCPPVGIRILRSQSTTSCHS
CKSSWPTSTVVTAKQGTSSSSTGSASPFVGSRNKASACVL*

mRNA from alignment at ScGOVlb_1622:1207304..1209613+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi1886.t1 ID=Gvermi1886.t1|Name=Gvermi1886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2310bp|location=Sequence derived from alignment at ScGOVlb_1622:1207304..1209613+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgggcccagaaagctctaacaacttgccgtctaggccgcgcttttcgtg
ggacattcgaacggttccgtggacagatggacgcggaaatcaggagcagt
acgcagaagccgtttcTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaccagaacaagttaattctaccaccggatgcta
acgggaattcgcaaggcagtatcacgcttgttgacagggatatgcacaca
tacataccccaccaggtgttcacgtttcgtaccagtggtattactgggga
taacgagagcaccttgttttgtgcgtctgcgcatatcgaaggcgatatag
cgaagaaaccttggacggatgttaagaagatcgtggacaaggttcacaag
cacgtctgcggacactctacatactcagacataagggtgttgttagagag
aaacaagctgtggaatgagcagggcgagaagtacttgcattcagtcctcg
agagatgtacagcgtgtctaactacggccaagcccaagtcgagccgaaag
gtgtccctcagtgcaatgactaggtccttcaacaatctggtgtgtgtgga
ccacttgtttctcgatcagtactgcgttatgcacgctatggacgctgcat
cccgttactacgcgggtgctgtcgtcgaagatacgtcgatgtggcgagca
atcctgtttttcgacgcgcactgggtaactccgttttggacgccgcaggt
tgttgcctacgacagaggcttgaacaacagcgtcttcatggagtacttgc
aagctcaggatataggtacaagaccgctccccccgcgcagacacagtaag
aatgtgctggagtctaaacacaggatcatccgcgatgtttttttgcgact
gcaggaagcgtcgaaaaacgacaagcataaatggacagacaagctgctcg
ttcaacaaaccatcaggatatctaacgatctgtatggcagtgacatactg
gccggccaagagctggtaaagggctacgcaaggcctgttgaggctggctc
tgtgccaaaactgctgtcgcaggatctcatcgatgcttaccagaagttgc
tggccaagcgtaagttgacattcatcctccaatcgaagacattcgaagaa
gcctcgatagccgatggcgatatggtccaggtttttgtgaagaactacca
cgacaaacggggcaaatggtctgacaacagaccagtcctagcatacgatg
tcgccgaccgtacctttaccgtgcccggatcgaagggaagataaatcaac
gcagccattgaagatgttaggcccgcaatatgcgacaacgagctagctac
cgctgtgcaagatgctattgacgagttggatagaaaccttgaagaggttg
tacaggagttgaacaatgacacaatgtccgaggaacacaattcagccgca
catcagaacaaacctacccgtaacagcgatgaagaactggactgcattgg
acctaatttaccgaaggtcggggagagaatcgaagtttactggccaatcg
acaagaagttttacgaagggactgtgcatcaacacgaagaggagtcaggt
aagttctccgtccactatgacgacggcgatgaagagaagttgactctgga
aaacgaagtatggaattatgtcagggaagcgcccaacgcagcacagaccg
cagcagaaacgcatgacgtcgatcgcaagcaagccggggaggtgcagttg
tcaccgggacaggagctggaaagctctgagaaaaagctcatcgaaactta
ctacaaagcgtttggccacggggagttcatgctacatcaggcgcaaggac
taccgccctacgcaactcaaaacgcttataacaaggaggaacggtcgttc
aagaagatcgttcgcgatgtcgcagtttcccaggtgcccaaaaccgcaaa
tatagtcacaagccatgtgttttacaaggtcaaacggtgcgatgatactt
ccctcacgctcaaggcacgtattgctgtccatggtaacaaggaccttgac
aaggacattctgaagacagactgggcaacttgcccaccagttggcatacg
aatattgcggtcccagtccacaacttcttgccattcctgcaagtcctctt
ggccgacctcgactgttgtcactgcaaagcagggtacctcgtcgtcatcg
acgggtagcgcttcgccattcgtgggtagccgcaacaaggcatcggcttg
cgtgttgtag

Coding sequence (CDS) from alignment at ScGOVlb_1622:1207304..1209613+

>Gvermi1886.t1 ID=Gvermi1886.t1|Name=Gvermi1886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2223bp|location=Sequence derived from alignment at ScGOVlb_1622:1207304..1209613+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgggcccagaaagctctaacaacttgccgtctaggccgcgcttttcgtg
ggacattcgaacggttccgtggacagatggacgcggaaatcaggagcagt
acgcagaagccgtttcTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaccagaacaagttaattctaccaccggatgcta
acgggaattcgcaaggcagtatcacgcttgttgacagggatatgcacaca
tacataccccaccaggtgttcacgtttcgtaccagtggtattactgggga
taacgagagcaccttgttttgtgcgtctgcgcatatcgaaggcgatatag
cgaagaaaccttggacggatgttaagaagatcgtggacaaggttcacaag
cacgtctgcggacactctacatactcagacataagggtgttgttagagag
aaacaagctgtggaatgagcagggcgagaagtacttgcattcagtcctcg
agagatgtacagcgtgtctaactacggccaagcccaagtcgagccgaaag
gtgtccctcagtgcaatgactaggtccttcaacaatctggtgtgtgtgga
ccacttgtttctcgatcagtactgcgttatgcacgctatggacgctgcat
cccgttactacgcgggtgctgtcgtcgaagatacgtcgatgtggcgagca
atcctgtttttcgacgcgcactgggtaactccgttttggacgccgcaggt
tgttgcctacgacagaggcttgaacaacagcgtcttcatggagtacttgc
aagctcaggatataggtacaagaccgctccccccgcgcagacacagtaag
aatgtgctggagtctaaacacaggatcatccgcgatgtttttttgcgact
gcaggaagcgtcgaaaaacgacaagcataaatggacagacaagctgctcg
ttcaacaaaccatcaggatatctaacgatctgtatggcagtgacatactg
gccggccaagagctggtaaagggctacgcaaggcctgttgaggctggctc
tgtgccaaaactgctgtcgcaggatctcatcgatgcttaccagaagttgc
tggccaagcgtaagttgacattcatcctccaatcgaagacattcgaagaa
gcctcgatagccgatggcgatatggtccaggtttttgtgaagaactacca
cgacaaacggggcaaatggtctgacaacagaccagtcctagcatacgatg
tcgccgaccctaccgctgtgcaagatgctattgacgagttggatagaaac
cttgaagaggttgtacaggagttgaacaatgacacaatgtccgaggaaca
caattcagccgcacatcagaacaaacctacccgtaacagcgatgaagaac
tggactgcattggacctaatttaccgaaggtcggggagagaatcgaagtt
tactggccaatcgacaagaagttttacgaagggactgtgcatcaacacga
agaggagtcaggtaagttctccgtccactatgacgacggcgatgaagaga
agttgactctggaaaacgaagtatggaattatgtcagggaagcgcccaac
gcagcacagaccgcagcagaaacgcatgacgtcgatcgcaagcaagccgg
ggaggtgcagttgtcaccgggacaggagctggaaagctctgagaaaaagc
tcatcgaaacttactacaaagcgtttggccacggggagttcatgctacat
caggcgcaaggactaccgccctacgcaactcaaaacgcttataacaagga
ggaacggtcgttcaagaagatcgttcgcgatgtcgcagtttcccaggtgc
ccaaaaccgcaaatatagtcacaagccatgtgttttacaaggtcaaacgg
tgcgatgatacttccctcacgctcaaggcacgtattgctgtccatggtaa
caaggaccttgacaaggacattctgaagacagactgggcaacttgcccac
cagttggcatacgaatattgcggtcccagtccacaacttcttgccattcc
tgcaagtcctcttggccgacctcgactgttgtcactgcaaagcagggtac
ctcgtcgtcatcgacgggtagcgcttcgccattcgtgggtagccgcaaca
aggcatcggcttgcgtgttgtag