Gvermi1884.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1884.t1
Unique NameGvermi1884.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:1191966..1192628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010473765.1
PFAMsRetrotran_gag_2
Max annot lvl35493|Streptophyta
Evalue8.75e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38022@33090|Viridiplantae,3GQ06@35493|Streptophyta,3HZAV@3699|Brassicales
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1884Gvermi1884Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 1191966..1192628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1884.t1.stop1Gvermi1884.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 1191966..1191968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1884.t1.CDS1Gvermi1884.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1191966..1192628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1884.t1.exon1Gvermi1884.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1191966..1192628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1884.t1.start1Gvermi1884.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 1192626..1192628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1884.t1Gvermi1884.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 1191966..1192628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1884.t1 ID=Gvermi1884.t1|Name=Gvermi1884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=221bp
MASEGTKIVALKRSNWITWRDLMLTLLKSQSLHQFLYEGEDAPAEEHDDE
AKASFLMKKNIAPELYYLVRNLSRPHEIWAALRRHYGSTSKRNIQTCKRA
LRDITIESCSFDITTYLQKKADAIDALLDLDVNIDDNEMSDHILKGLEKD
FRLTDFLFFKSTQDNSDYHRLISDIQVYVNSHSFKMKHGRKNKSHRANDT
KRFQKRKKNSYHCDFCNKSG*
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spliced messenger RNA

>Gvermi1884.t1 ID=Gvermi1884.t1|Name=Gvermi1884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_1622:1191966..1192628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCAGAAGGCACCAAGATCGTCGCGTTGAAGCGATCGAATTGGAT
TACATGGAGAGATTTGATGCTAACTCTCTTGAAGTCTCAAAGCCTTCATC
AATTTTTGTATGAAGGTGAAGATGCTCCTGCTGAAGAGCATGATGACGAA
GCAAAAGCATCATTTCTGATGAAGAAGAATATTGCTCCTGAACTCTATTA
TCTTGTAAGAAATTTATCACGACCACATGAAATATGGGCTGCTTTACGCC
GACATTATGGCTCTACTAGCAAGAGAAATATCCAAACTTGCAAAAGAGCC
TTGCGAGATATTACCATTGAGTCCTGCTCGTTTGATATTACTACTTATTT
GCAAAAGAAGGCAGATGCTATCGATGCTTTGCTTGATCTTGATGTGAACA
TCGATGATAACGAAATGTCGGATCATATACTTAAAGGGCTTGAAAAGGAT
TTTCGCTTGACTGATTTCTTGTTCTTCAAGTCTACCCAAGATAACTCGGA
CTATCATCGCTTGATTTCCGATATCCAAGTTTATGTTAATTCTCATTCAT
TCAAGATGAAGCATGGAAGGAAAAATAAGTCTCACCGAGCAAACGATACG
AAAAGGTTTCAAAAGAGGAAGAAGAACTCGTACCATTGCGATTTTTGCAA
TAAGTCCGGATAA
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protein sequence of Gvermi1884.t1

>Gvermi1884.t1 ID=Gvermi1884.t1|Name=Gvermi1884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=221bp
MASEGTKIVALKRSNWITWRDLMLTLLKSQSLHQFLYEGEDAPAEEHDDE
AKASFLMKKNIAPELYYLVRNLSRPHEIWAALRRHYGSTSKRNIQTCKRA
LRDITIESCSFDITTYLQKKADAIDALLDLDVNIDDNEMSDHILKGLEKD
FRLTDFLFFKSTQDNSDYHRLISDIQVYVNSHSFKMKHGRKNKSHRANDT
KRFQKRKKNSYHCDFCNKSG*
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mRNA from alignment at ScGOVlb_1622:1191966..1192628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1884.t1 ID=Gvermi1884.t1|Name=Gvermi1884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_1622:1191966..1192628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCAGAAGGCACCAAGATCGTCGCGTTGAAGCGATCGAATTGGAT
TACATGGAGAGATTTGATGCTAACTCTCTTGAAGTCTCAAAGCCTTCATC
AATTTTTGTATGAAGGTGAAGATGCTCCTGCTGAAGAGCATGATGACGAA
GCAAAAGCATCATTTCTGATGAAGAAGAATATTGCTCCTGAACTCTATTA
TCTTGTAAGAAATTTATCACGACCACATGAAATATGGGCTGCTTTACGCC
GACATTATGGCTCTACTAGCAAGAGAAATATCCAAACTTGCAAAAGAGCC
TTGCGAGATATTACCATTGAGTCCTGCTCGTTTGATATTACTACTTATTT
GCAAAAGAAGGCAGATGCTATCGATGCTTTGCTTGATCTTGATGTGAACA
TCGATGATAACGAAATGTCGGATCATATACTTAAAGGGCTTGAAAAGGAT
TTTCGCTTGACTGATTTCTTGTTCTTCAAGTCTACCCAAGATAACTCGGA
CTATCATCGCTTGATTTCCGATATCCAAGTTTATGTTAATTCTCATTCAT
TCAAGATGAAGCATGGAAGGAAAAATAAGTCTCACCGAGCAAACGATACG
AAAAGGTTTCAAAAGAGGAAGAAGAACTCGTACCATTGCGATTTTTGCAA
TAAGTCCGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:1191966..1192628-

>Gvermi1884.t1 ID=Gvermi1884.t1|Name=Gvermi1884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=663bp|location=Sequence derived from alignment at ScGOVlb_1622:1191966..1192628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCAGAAGGCACCAAGATCGTCGCGTTGAAGCGATCGAATTGGAT
TACATGGAGAGATTTGATGCTAACTCTCTTGAAGTCTCAAAGCCTTCATC
AATTTTTGTATGAAGGTGAAGATGCTCCTGCTGAAGAGCATGATGACGAA
GCAAAAGCATCATTTCTGATGAAGAAGAATATTGCTCCTGAACTCTATTA
TCTTGTAAGAAATTTATCACGACCACATGAAATATGGGCTGCTTTACGCC
GACATTATGGCTCTACTAGCAAGAGAAATATCCAAACTTGCAAAAGAGCC
TTGCGAGATATTACCATTGAGTCCTGCTCGTTTGATATTACTACTTATTT
GCAAAAGAAGGCAGATGCTATCGATGCTTTGCTTGATCTTGATGTGAACA
TCGATGATAACGAAATGTCGGATCATATACTTAAAGGGCTTGAAAAGGAT
TTTCGCTTGACTGATTTCTTGTTCTTCAAGTCTACCCAAGATAACTCGGA
CTATCATCGCTTGATTTCCGATATCCAAGTTTATGTTAATTCTCATTCAT
TCAAGATGAAGCATGGAAGGAAAAATAAGTCTCACCGAGCAAACGATACG
AAAAGGTTTCAAAAGAGGAAGAAGAACTCGTACCATTGCGATTTTTGCAA
TAAGTCCGGATAA
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