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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7029.ACYPI24114-PA |
| PFAMs | RVT_2,Retrotran_gag_2,rve |
| Max annot lvl | 33208|Metazoa |
| Evalue | 1.64e-73 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SQRW@50557|Insecta |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi1883.t1 ID=Gvermi1883.t1|Name=Gvermi1883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=901bp MDSQVVVDSGATDHFFCNPQMFVGPIRAHSSLLEFASGNLESTGIGTVRL ETTEALITIDNVLFVPDITVNLVSLIKIESKGVRYLYENGFRSLRLGSRV LGHLNISSHLIVMELLQKRCALSQKIMTKPVKDIQDVHSSLGHLSFDKIK HLKIETDVSVRYPCDVGNATKTTRNVPKRKFKKPHRHLYELLHSDICEMP IFSVDRFKYFALFVDDASRYRHIVLFRKKSNIYHGFSELLEEGSITISTI RSDQGSEYLSKTFQSLCISNDIRQEFSSVLTPEEMGLAERLNHFETADVI SAPSTCTFNAKDFPGIPDETLRKFIIKQEGITPTENVDDGDGFSEALVKN SEPNKTFLTRIETLPLNMSDEYKRLDSKKWLAAIEPELKNLRNSHAYEAV KPLIGHQVISTLFVFTKKISEKTNSERNKARLVVRGFEFKATFGDTFGPT PHLDTLRLFVSYCACMASSGFSLYSIDFVSAFLNALSDPHVYITPPQGVK IPEIHCWKLNRALYGTSRAPRLWHKTLDQLLHNLGFLRSVADACLYYIKT EDLTELIFFHVDDLILCTILQKTEDFVRSVKKKFDIHVLGFPTEVLGIQI RRDKYGIHMSVKKNEDKIINEFEMNNAEISRTPLPPGLKLPPLKEVQDAI VIDKYRKLLGKLLYLARCLRFDICYAVNLLSRYSTNHNKMIWRLLKGILK YLKGTNLEISYAFKPNKHESKISIWSDASFSDDSSTRKSTIGYLVFWSGY IVSWNSSKTKHVSLSTTESEFIAAAEGLKTALYLRNVNQEIFCYSLYLTL FEDNQSCIKWLKNATGYHAKTKHIDICYHFARELYEQEILDTKFIPSAKQ FGDLFTKSLPTIAHNSLLKMIHCFPSSGGMLDAKSFVEPEKAASTHFSNE * back to topspliced messenger RNA >Gvermi1883.t1 ID=Gvermi1883.t1|Name=Gvermi1883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2703bp|location=Sequence derived from alignment at ScGOVlb_1622:1188855..1191857- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACTCACAAGTTGTCGTTGACTCTGGAGCAACTGACCATTTCTTTTG CAATCCTCAAATGTTTGTCGGACCTATTCGAGCTCACTCTAGCTTGCTTG AGTTTGCTTCCGGAAATCTTGAAAGTACAGGTATTGGAACTGTCCGTCTC GAAACTACAGAGGCATTGATTACCATTGACAACGTATTATTTGTCCCTGA TATTACTGTCAACCTTGTTTCGCTTATCAAGATTGAATCAAAAGGAGTTC GGTATTTATACGAGAACGGCTTTCGAAGTCTAAGACTTGGGTCCCGTGTT CTAGGTCATCTTAACATCTCTTCGCATTTGATTGTAATGGAACTTCTACA GAAACGATGTGCTCTGTCCCAGAAGATTATGACGAAACCCGTGAAAGACA TTCAGGATGTTCATTCTTCCCTGGGTCATTTGTCTTTTGACAAGATTAAG CACTTGAAAATTGAGACTGATGTCAGTGTCAGATATCCGTGCGATGTTGG CAACGCTACGAAAACTACTCGAAATGTACCTAAAAGAAAATTTAAGAAGC CGCACCGACATCTCTATGAGCTTCTACACTCTGATATATGCGAGATGCCG ATTTTCTCAGTGGATAGATTCAAATATTTTGCTTTGTTTGTAGATGATGC TTCAAGGTATCGCCACATTGTTCTTTTCCGTAAGAAATCCAATATCTATC ATGGATTTTCAGAATTGCTCGAAGAAGGATCAATCACAATCTCAACGATT CGCTCCGATCAAGGATCTGAATACTTGAGCAAAACTTTTCAGTCTCTATG TATTTCAAACGACATTCGTCAAGAGTTTTCATCGGTTTTAACTCCAGAAG AGATGGGCTTAGCTGAACGGCTAAACCACTTCGAAACTGCTGATGTTATC TCTGCACCATCCACTTGCACATTCAATGCCAAAGATTTTCCTGGCATTCC AGATGAAACTCTGAGGAAATTTATTATCAAACAAGAGGGTATTACTCCTA CTGAAAACGTCGATGATGGTGACGGTTTTTCCGAAGCACTTGTGAAAAAC TCAGAACCGAACAAGACATTTCTTACCAGAATTGAAACACTGCCTTTGAA TATGAGTGACGAATACAAGAGACTCGACTCAAAGAAATGGCTGGCCGCTA TTGAACCCGAGTTGAAAAATCTACGAAATTCCCATGCCTATGAAGCGGTT AAACCACTGATTGGGCACCAAGTTATCTCTACTCTTTTTGTGTTCACGAA GAAAATTTCCGAGAAAACCAACTCTGAAAGGAACAAAGCTCGACTCGTTG TCAGGGGTTTTGAGTTTAAAGCAACCTTCGGAGATACTTTTGGACCTACT CCACATTTGGATACACTGCGCTTGTTTGTATCTTACTGTGCTTGTATGGC TTCATCAGGATTTTCTCTTTATTCAATCGACTTTGTTTCCGCATTTCTAA ATGCCCTGAGTGACCCTCATGTTTACATAACACCACCTCAGGGCGTCAAA ATACCTGAAATACATTGCTGGAAACTCAATCGTGCTTTATATGGAACTTC CAGAGCACCGAGATTATGGCACAAGACTCTTGATCAACTTTTGCATAACC TCGGGTTCCTTCGCTCCGTCGCAGATGCCTGCCTTTACTACATAAAGACT GAAGACCTCACGGAACTTATTTTCTTCCATGTCGATGATCTTATTCTTTG CACTATACTTCAAAAGACTGAAGATTTTGTTCGATCTGTGAAAAAAAAGT TTGACATTCATGTTTTGGGATTCCCTACTGAGGTGCTAGGAATTCAAATT AGACGAGACAAATATGGAATACATATGTCCGTGAAGAAAAACGAAGACAA AATAATCAACGAATTTGAAATGAACAATGCTGAAATCTCGCGCACACCTC TTCCGCCAGGTCTAAAGCTACCTCCTCTGAAGGAAGTACAAGATGCAATT GTGATTGACAAGTACAGAAAACTTTTGGGAAAACTTTTATATTTGGCTAG ATGTTTGAGATTTGACATTTGCTATGCCGTCAATCTCCTATCAAGGTACT CTACCAATCACAACAAAATGATATGGAGACTACTTAAAGGCATTCTGAAG TACCTGAAAGGAACTAATTTGGAGATCTCGTATGCTTTCAAGCCAAACAA ACATGAGTCTAAGATTTCAATATGGAGTGATGCTTCTTTTTCAGACGACA GTAGCACTCGGAAAAGTACAATTGGGTACCTCGTTTTCTGGAGTGGATAT ATTGTATCTTGGAATTCTTCGAAAACGAAACACGTATCTCTTAGCACGAC GGAGTCAGAATTTATCGCAGCTGCAGAAGGTCTCAAGACAGCCTTATATT TAAGGAATGTGAATCAAGAAATATTCTGTTATAGTCTTTATCTGACATTA TTTGAAGATAACCAAAGTTGTATTAAATGGCTAAAGAATGCTACTGGATA TCATGCAAAAACTAAGCATATCGACATATGCTACCACTTTGCACGTGAGC TCTACGAACAAGAAATACTAGACACCAAATTCATTCCATCAGCCAAACAA TTTGGAGATTTATTCACTAAATCACTTCCTACTATTGCTCACAATTCATT ATTGAAAATGATACACTGCTTCCCGAGTTCAGGGGGGATGTTAGACGCCA AGTCATTTGTGGAACCCGAGAAGGCTGCATCCACTCATTTTAGTAACGAA TAA back to topprotein sequence of Gvermi1883.t1 >Gvermi1883.t1 ID=Gvermi1883.t1|Name=Gvermi1883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=901bp
MDSQVVVDSGATDHFFCNPQMFVGPIRAHSSLLEFASGNLESTGIGTVRL ETTEALITIDNVLFVPDITVNLVSLIKIESKGVRYLYENGFRSLRLGSRV LGHLNISSHLIVMELLQKRCALSQKIMTKPVKDIQDVHSSLGHLSFDKIK HLKIETDVSVRYPCDVGNATKTTRNVPKRKFKKPHRHLYELLHSDICEMP IFSVDRFKYFALFVDDASRYRHIVLFRKKSNIYHGFSELLEEGSITISTI RSDQGSEYLSKTFQSLCISNDIRQEFSSVLTPEEMGLAERLNHFETADVI SAPSTCTFNAKDFPGIPDETLRKFIIKQEGITPTENVDDGDGFSEALVKN SEPNKTFLTRIETLPLNMSDEYKRLDSKKWLAAIEPELKNLRNSHAYEAV KPLIGHQVISTLFVFTKKISEKTNSERNKARLVVRGFEFKATFGDTFGPT PHLDTLRLFVSYCACMASSGFSLYSIDFVSAFLNALSDPHVYITPPQGVK IPEIHCWKLNRALYGTSRAPRLWHKTLDQLLHNLGFLRSVADACLYYIKT EDLTELIFFHVDDLILCTILQKTEDFVRSVKKKFDIHVLGFPTEVLGIQI RRDKYGIHMSVKKNEDKIINEFEMNNAEISRTPLPPGLKLPPLKEVQDAI VIDKYRKLLGKLLYLARCLRFDICYAVNLLSRYSTNHNKMIWRLLKGILK YLKGTNLEISYAFKPNKHESKISIWSDASFSDDSSTRKSTIGYLVFWSGY IVSWNSSKTKHVSLSTTESEFIAAAEGLKTALYLRNVNQEIFCYSLYLTL FEDNQSCIKWLKNATGYHAKTKHIDICYHFARELYEQEILDTKFIPSAKQ FGDLFTKSLPTIAHNSLLKMIHCFPSSGGMLDAKSFVEPEKAASTHFSNE * back to topmRNA from alignment at ScGOVlb_1622:1188855..1191857- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi1883.t1 ID=Gvermi1883.t1|Name=Gvermi1883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3003bp|location=Sequence derived from alignment at ScGOVlb_1622:1188855..1191857- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGACTCACAAGTTGTCGTTGACTCTGGAGCAACTGACCATTTCTTTTG
CAATCCTCAAATGTTTGTCGGACCTATTCGAGCTCACTCTAGCTTGCTTG
AGTTTGCTTCCGGAAATCTTGAAAGTACAGGTATTGGAACTGTCCGTCTC
GAAACTACAGAGGCATTGATTACCATTGACAACGTATTATTTGTCCCTGA
TATTACTGTCAACCTTGTTTCGCTTATCAAGATTGAATCAAAAGGAGTTC
GGTATTTATACGAGAACGGCTTTCGAAGTCTAAGACTTGGGTCCCGTGTT
CTAGGTCATCTTAACATCTCTTCGCATTTGATTGTAATGGAACTTCTACA
GAAACGATGTGCTCTGTCCCAGAAGATTATGACGAAACCCGTGAAAGACA
TTCAGGATGTTCATTCTTCCCTGGGTCATTTGTCTTTTGACAAGATTAAG
CACTTGAAAATTGAGACTGATGTCAGTGTCAGATATCCGTGCGATGTTGG
CAACGCTACGAAAACTACTCGAAATGTACCTAAAAGAAAATTTAAGAAGC
CGCACCGACATCTCTATGAGCTTCTACACTCTGATATATGCGAGATGCCG
ATTTTCTCAGTGGATAGATTCAAATATTTTGCTTTGTTTGTAGATGATGC
TTCAAGGTATCGCCACATTGTTCTTTTCCGTAAGAAATCCAATATCTATC
ATGGATTTTCAGAATTGCTCGAAGAAGGATCAATCACAATCTCAACGATT
CGCTCCGATCAAGGATCTGAATACTTGAGCAAAACTTTTCAGTCTCTATG
TATTTCAAACGACATTCGTCAAGAGTTTTCATCGGTTTTAACTCCAGAAG
AGATGGGCTTAGCTGAACGGCTAAACCGTACATTGCTGGAAAAAGTACGA
CCTATGCTTTTGGAGTCAACCCTTCTCACTACTTTCTGGTGATTTGCTAT
TTTGCAAGCCAATTATCTGTATAACCGGTCACCTCATTCTTATCTTGACA
ATGACACACCCTTCCTTGCTTGATATGGACTCTCTGAGAACTATGAAAGG
TTGATACCGTTTGGTTGCACAGTCAGTATCTACATCTAGAAAGAAAAGCG
TGGAAAATTAGACAATACTACCAAGCCTGGAGTTATGCTAGGATAAAGCA
ACAACTCAACTGAGCTCTTTGTATTAGACTTCGAAACTGCTGATGTTATC
TCTGCACCATCCACTTGCACATTCAATGCCAAAGATTTTCCTGGCATTCC
AGATGAAACTCTGAGGAAATTTATTATCAAACAAGAGGGTATTACTCCTA
CTGAAAACGTCGATGATGGTGACGGTTTTTCCGAAGCACTTGTGAAAAAC
TCAGAACCGAACAAGACATTTCTTACCAGAATTGAAACACTGCCTTTGAA
TATGAGTGACGAATACAAGAGACTCGACTCAAAGAAATGGCTGGCCGCTA
TTGAACCCGAGTTGAAAAATCTACGAAATTCCCATGCCTATGAAGCGGTT
AAACCACTGATTGGGCACCAAGTTATCTCTACTCTTTTTGTGTTCACGAA
GAAAATTTCCGAGAAAACCAACTCTGAAAGGAACAAAGCTCGACTCGTTG
TCAGGGGTTTTGAGTTTAAAGCAACCTTCGGAGATACTTTTGGACCTACT
CCACATTTGGATACACTGCGCTTGTTTGTATCTTACTGTGCTTGTATGGC
TTCATCAGGATTTTCTCTTTATTCAATCGACTTTGTTTCCGCATTTCTAA
ATGCCCTGAGTGACCCTCATGTTTACATAACACCACCTCAGGGCGTCAAA
ATACCTGAAATACATTGCTGGAAACTCAATCGTGCTTTATATGGAACTTC
CAGAGCACCGAGATTATGGCACAAGACTCTTGATCAACTTTTGCATAACC
TCGGGTTCCTTCGCTCCGTCGCAGATGCCTGCCTTTACTACATAAAGACT
GAAGACCTCACGGAACTTATTTTCTTCCATGTCGATGATCTTATTCTTTG
CACTATACTTCAAAAGACTGAAGATTTTGTTCGATCTGTGAAAAAAAAGT
TTGACATTCATGTTTTGGGATTCCCTACTGAGGTGCTAGGAATTCAAATT
AGACGAGACAAATATGGAATACATATGTCCGTGAAGAAAAACGAAGACAA
AATAATCAACGAATTTGAAATGAACAATGCTGAAATCTCGCGCACACCTC
TTCCGCCAGGTCTAAAGCTACCTCCTCTGAAGGAAGTACAAGATGCAATT
GTGATTGACAAGTACAGAAAACTTTTGGGAAAACTTTTATATTTGGCTAG
ATGTTTGAGATTTGACATTTGCTATGCCGTCAATCTCCTATCAAGGTACT
CTACCAATCACAACAAAATGATATGGAGACTACTTAAAGGCATTCTGAAG
TACCTGAAAGGAACTAATTTGGAGATCTCGTATGCTTTCAAGCCAAACAA
ACATGAGTCTAAGATTTCAATATGGAGTGATGCTTCTTTTTCAGACGACA
GTAGCACTCGGAAAAGTACAATTGGGTACCTCGTTTTCTGGAGTGGATAT
ATTGTATCTTGGAATTCTTCGAAAACGAAACACGTATCTCTTAGCACGAC
GGAGTCAGAATTTATCGCAGCTGCAGAAGGTCTCAAGACAGCCTTATATT
TAAGGAATGTGAATCAAGAAATATTCTGTTATAGTCTTTATCTGACATTA
TTTGAAGATAACCAAAGTTGTATTAAATGGCTAAAGAATGCTACTGGATA
TCATGCAAAAACTAAGCATATCGACATATGCTACCACTTTGCACGTGAGC
TCTACGAACAAGAAATACTAGACACCAAATTCATTCCATCAGCCAAACAA
TTTGGAGATTTATTCACTAAATCACTTCCTACTATTGCTCACAATTCATT
ATTGAAAATGATACACTGCTTCCCGAGTTCAGGGGGGATGTTAGACGCCA
AGTCATTTGTGGAACCCGAGAAGGCTGCATCCACTCATTTTAGTAACGAA
TAA back to topCoding sequence (CDS) from alignment at ScGOVlb_1622:1188855..1191857- >Gvermi1883.t1 ID=Gvermi1883.t1|Name=Gvermi1883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2703bp|location=Sequence derived from alignment at ScGOVlb_1622:1188855..1191857- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGACTCACAAGTTGTCGTTGACTCTGGAGCAACTGACCATTTCTTTTG CAATCCTCAAATGTTTGTCGGACCTATTCGAGCTCACTCTAGCTTGCTTG AGTTTGCTTCCGGAAATCTTGAAAGTACAGGTATTGGAACTGTCCGTCTC GAAACTACAGAGGCATTGATTACCATTGACAACGTATTATTTGTCCCTGA TATTACTGTCAACCTTGTTTCGCTTATCAAGATTGAATCAAAAGGAGTTC GGTATTTATACGAGAACGGCTTTCGAAGTCTAAGACTTGGGTCCCGTGTT CTAGGTCATCTTAACATCTCTTCGCATTTGATTGTAATGGAACTTCTACA GAAACGATGTGCTCTGTCCCAGAAGATTATGACGAAACCCGTGAAAGACA TTCAGGATGTTCATTCTTCCCTGGGTCATTTGTCTTTTGACAAGATTAAG CACTTGAAAATTGAGACTGATGTCAGTGTCAGATATCCGTGCGATGTTGG CAACGCTACGAAAACTACTCGAAATGTACCTAAAAGAAAATTTAAGAAGC CGCACCGACATCTCTATGAGCTTCTACACTCTGATATATGCGAGATGCCG ATTTTCTCAGTGGATAGATTCAAATATTTTGCTTTGTTTGTAGATGATGC TTCAAGGTATCGCCACATTGTTCTTTTCCGTAAGAAATCCAATATCTATC ATGGATTTTCAGAATTGCTCGAAGAAGGATCAATCACAATCTCAACGATT CGCTCCGATCAAGGATCTGAATACTTGAGCAAAACTTTTCAGTCTCTATG TATTTCAAACGACATTCGTCAAGAGTTTTCATCGGTTTTAACTCCAGAAG AGATGGGCTTAGCTGAACGGCTAAACCACTTCGAAACTGCTGATGTTATC TCTGCACCATCCACTTGCACATTCAATGCCAAAGATTTTCCTGGCATTCC AGATGAAACTCTGAGGAAATTTATTATCAAACAAGAGGGTATTACTCCTA CTGAAAACGTCGATGATGGTGACGGTTTTTCCGAAGCACTTGTGAAAAAC TCAGAACCGAACAAGACATTTCTTACCAGAATTGAAACACTGCCTTTGAA TATGAGTGACGAATACAAGAGACTCGACTCAAAGAAATGGCTGGCCGCTA TTGAACCCGAGTTGAAAAATCTACGAAATTCCCATGCCTATGAAGCGGTT AAACCACTGATTGGGCACCAAGTTATCTCTACTCTTTTTGTGTTCACGAA GAAAATTTCCGAGAAAACCAACTCTGAAAGGAACAAAGCTCGACTCGTTG TCAGGGGTTTTGAGTTTAAAGCAACCTTCGGAGATACTTTTGGACCTACT CCACATTTGGATACACTGCGCTTGTTTGTATCTTACTGTGCTTGTATGGC TTCATCAGGATTTTCTCTTTATTCAATCGACTTTGTTTCCGCATTTCTAA ATGCCCTGAGTGACCCTCATGTTTACATAACACCACCTCAGGGCGTCAAA ATACCTGAAATACATTGCTGGAAACTCAATCGTGCTTTATATGGAACTTC CAGAGCACCGAGATTATGGCACAAGACTCTTGATCAACTTTTGCATAACC TCGGGTTCCTTCGCTCCGTCGCAGATGCCTGCCTTTACTACATAAAGACT GAAGACCTCACGGAACTTATTTTCTTCCATGTCGATGATCTTATTCTTTG CACTATACTTCAAAAGACTGAAGATTTTGTTCGATCTGTGAAAAAAAAGT TTGACATTCATGTTTTGGGATTCCCTACTGAGGTGCTAGGAATTCAAATT AGACGAGACAAATATGGAATACATATGTCCGTGAAGAAAAACGAAGACAA AATAATCAACGAATTTGAAATGAACAATGCTGAAATCTCGCGCACACCTC TTCCGCCAGGTCTAAAGCTACCTCCTCTGAAGGAAGTACAAGATGCAATT GTGATTGACAAGTACAGAAAACTTTTGGGAAAACTTTTATATTTGGCTAG ATGTTTGAGATTTGACATTTGCTATGCCGTCAATCTCCTATCAAGGTACT CTACCAATCACAACAAAATGATATGGAGACTACTTAAAGGCATTCTGAAG TACCTGAAAGGAACTAATTTGGAGATCTCGTATGCTTTCAAGCCAAACAA ACATGAGTCTAAGATTTCAATATGGAGTGATGCTTCTTTTTCAGACGACA GTAGCACTCGGAAAAGTACAATTGGGTACCTCGTTTTCTGGAGTGGATAT ATTGTATCTTGGAATTCTTCGAAAACGAAACACGTATCTCTTAGCACGAC GGAGTCAGAATTTATCGCAGCTGCAGAAGGTCTCAAGACAGCCTTATATT TAAGGAATGTGAATCAAGAAATATTCTGTTATAGTCTTTATCTGACATTA TTTGAAGATAACCAAAGTTGTATTAAATGGCTAAAGAATGCTACTGGATA TCATGCAAAAACTAAGCATATCGACATATGCTACCACTTTGCACGTGAGC TCTACGAACAAGAAATACTAGACACCAAATTCATTCCATCAGCCAAACAA TTTGGAGATTTATTCACTAAATCACTTCCTACTATTGCTCACAATTCATT ATTGAAAATGATACACTGCTTCCCGAGTTCAGGGGGGATGTTAGACGCCA AGTCATTTGTGGAACCCGAGAAGGCTGCATCCACTCATTTTAGTAACGAA TAA back to top
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