Gvermi1878.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1878.t1
Unique NameGvermi1878.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:1168634..1170175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1878Gvermi1878Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 1168634..1170175 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1878.t1.start1Gvermi1878.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 1168634..1168636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1878.t1.CDS1Gvermi1878.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1168634..1170175 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1878.t1.exon1Gvermi1878.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1168634..1170175 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1878.t1.stop1Gvermi1878.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 1170173..1170175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1878.t1Gvermi1878.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 1168634..1170175 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1878.t1 ID=Gvermi1878.t1|Name=Gvermi1878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=514bp
LNLKSSTSNVYSVLLHLCSAESVMTAEQVATRGMMDGSDFTPQFTLSTIQ
FESELLNNMITSLLATLIIANIGSVIKQIVFLTGRKDFNYLSFARSFVFL
NSDDPLRMLHWLRGRYDFRTTSHRPFRYELRKRLLVGPLIARTLTLAFSI
GSIVVALPSEKHLDACSRGDYTLVQTRPKARIVAMKHELVHVCDEIPLDT
RLGTVRSSASYCSFRGVDFNLQFQSDMSKQLSEIKNKDGVGMVQVSYSNN
GLLHSTIMTHNKTESLTSYVQWKTEDGHIFRSTIDSWDAETHFQTVVDSL
RFVTNRECNIIGKNIENGSPDFNVSSRMTGAIGCSFDALMSMRYVAAWTR
KSLRFRKVTTPAPRVLVSGASGFEVRRTCVVDVSVTRPMINIVPLAAGLV
LAFCINMAMLVTISWRGNAMDSAFHLVREVLGHDTGANPLQTSTRGDEVS
QVALRKFVCADGVSGHVGFVQGTGDTSVDEYSDAHTVGRCMQVACRGVRF
VSEASPNGKNSFI*
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spliced messenger RNA

>Gvermi1878.t1 ID=Gvermi1878.t1|Name=Gvermi1878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_1622:1168634..1170175+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAACCTCAAGAGCTCGACCTCCAACGTCTATTCAGTTTTGCTTCACTT
GTGCTCAGCTGAATCCGTCATGACTGCAGAACAGGTGGCGACGCGAGGCA
TGATGGACGGCTCTGATTTCACACCGCAGTTTACATTATCTACCATTCAG
TTTGAGAGTGAGCTGCTCAATAACATGATCACCTCTCTTTTAGCCACACT
CATCATCGCCAACATCGGAAGCGTCATCAAGCAAATAGTCTTTCTTACTG
GAAGAAAAGATTTTAACTATCTTTCCTTTGCGCGCTCGTTTGTCTTTCTC
AACTCGGATGACCCGCTGCGAATGCTGCATTGGTTGCGGGGTCGATACGA
CTTCCGAACAACGTCGCACAGGCCGTTCCGTTATGAGCTGCGGAAGCGTC
TTCTCGTTGGTCCGCTAATTGCACGCACACTAACCTTGGCCTTCAGCATT
GGTTCCATAGTTGTCGCGCTGCCTTCTGAAAAGCACCTTGATGCCTGCAG
CCGGGGGGATTATACCCTTGTTCAAACCAGGCCGAAGGCGCGAATCGTCG
CAATGAAACACGAGCTGGTGCATGTATGTGATGAGATACCCCTGGACACC
CGATTGGGCACTGTGAGATCTTCAGCTTCGTATTGTTCTTTTAGAGGGGT
GGATTTTAATTTACAGTTTCAATCCGACATGTCAAAACAATTATCTGAAA
TCAAGAACAAAGACGGAGTAGGGATGGTGCAAGTTTCTTACTCTAACAAT
GGCCTCCTCCACTCAACAATAATGACGCACAACAAAACGGAGTCATTAAC
ATCGTACGTGCAATGGAAGACGGAAGATGGACACATCTTTCGATCGACAA
TAGACTCATGGGACGCCGAAACGCATTTTCAAACAGTAGTGGACAGCTTG
AGATTCGTGACCAACCGAGAATGCAACATAATAGGAAAAAACATTGAGAA
TGGTAGTCCTGATTTCAATGTATCCAGCAGAATGACTGGAGCTATAGGCT
GTTCTTTTGACGCATTGATGAGTATGCGTTATGTGGCGGCATGGACAAGG
AAGAGTCTTCGATTTCGTAAAGTAACCACGCCGGCCCCTCGAGTGCTGGT
GTCAGGCGCGAGTGGGTTTGAAGTACGCCGCACCTGTGTCGTGGATGTAT
CCGTCACCCGTCCAATGATAAACATAGTACCGCTTGCAGCCGGCCTTGTT
CTGGCGTTTTGCATCAACATGGCCATGCTTGTGACGATTTCGTGGCGCGG
CAACGCGATGGACAGCGCCTTTCATTTGGTGCGAGAGGTGCTCGGACATG
ACACGGGTGCAAACCCTCTTCAAACTTCCACAAGGGGGGACGAGGTGTCG
CAGGTTGCGCTTCGAAAGTTTGTGTGCGCTGATGGCGTTTCTGGGCATGT
AGGGTTTGTCCAAGGCACGGGCGATACGAGTGTAGATGAGTACAGTGACG
CACACACTGTTGGTCGATGCATGCAGGTGGCCTGCCGTGGTGTTCGCTTT
GTCAGCGAAGCCTCGCCGAACGGAAAAAACTCGTTTATCTGA
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protein sequence of Gvermi1878.t1

>Gvermi1878.t1 ID=Gvermi1878.t1|Name=Gvermi1878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
LNLKSSTSNVYSVLLHLCSAESVMTAEQVATRGMMDGSDFTPQFTLSTIQ
FESELLNNMITSLLATLIIANIGSVIKQIVFLTGRKDFNYLSFARSFVFL
NSDDPLRMLHWLRGRYDFRTTSHRPFRYELRKRLLVGPLIARTLTLAFSI
GSIVVALPSEKHLDACSRGDYTLVQTRPKARIVAMKHELVHVCDEIPLDT
RLGTVRSSASYCSFRGVDFNLQFQSDMSKQLSEIKNKDGVGMVQVSYSNN
GLLHSTIMTHNKTESLTSYVQWKTEDGHIFRSTIDSWDAETHFQTVVDSL
RFVTNRECNIIGKNIENGSPDFNVSSRMTGAIGCSFDALMSMRYVAAWTR
KSLRFRKVTTPAPRVLVSGASGFEVRRTCVVDVSVTRPMINIVPLAAGLV
LAFCINMAMLVTISWRGNAMDSAFHLVREVLGHDTGANPLQTSTRGDEVS
QVALRKFVCADGVSGHVGFVQGTGDTSVDEYSDAHTVGRCMQVACRGVRF
VSEASPNGKNSFI*
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mRNA from alignment at ScGOVlb_1622:1168634..1170175+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1878.t1 ID=Gvermi1878.t1|Name=Gvermi1878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_1622:1168634..1170175+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAACCTCAAGAGCTCGACCTCCAACGTCTATTCAGTTTTGCTTCACTT
GTGCTCAGCTGAATCCGTCATGACTGCAGAACAGGTGGCGACGCGAGGCA
TGATGGACGGCTCTGATTTCACACCGCAGTTTACATTATCTACCATTCAG
TTTGAGAGTGAGCTGCTCAATAACATGATCACCTCTCTTTTAGCCACACT
CATCATCGCCAACATCGGAAGCGTCATCAAGCAAATAGTCTTTCTTACTG
GAAGAAAAGATTTTAACTATCTTTCCTTTGCGCGCTCGTTTGTCTTTCTC
AACTCGGATGACCCGCTGCGAATGCTGCATTGGTTGCGGGGTCGATACGA
CTTCCGAACAACGTCGCACAGGCCGTTCCGTTATGAGCTGCGGAAGCGTC
TTCTCGTTGGTCCGCTAATTGCACGCACACTAACCTTGGCCTTCAGCATT
GGTTCCATAGTTGTCGCGCTGCCTTCTGAAAAGCACCTTGATGCCTGCAG
CCGGGGGGATTATACCCTTGTTCAAACCAGGCCGAAGGCGCGAATCGTCG
CAATGAAACACGAGCTGGTGCATGTATGTGATGAGATACCCCTGGACACC
CGATTGGGCACTGTGAGATCTTCAGCTTCGTATTGTTCTTTTAGAGGGGT
GGATTTTAATTTACAGTTTCAATCCGACATGTCAAAACAATTATCTGAAA
TCAAGAACAAAGACGGAGTAGGGATGGTGCAAGTTTCTTACTCTAACAAT
GGCCTCCTCCACTCAACAATAATGACGCACAACAAAACGGAGTCATTAAC
ATCGTACGTGCAATGGAAGACGGAAGATGGACACATCTTTCGATCGACAA
TAGACTCATGGGACGCCGAAACGCATTTTCAAACAGTAGTGGACAGCTTG
AGATTCGTGACCAACCGAGAATGCAACATAATAGGAAAAAACATTGAGAA
TGGTAGTCCTGATTTCAATGTATCCAGCAGAATGACTGGAGCTATAGGCT
GTTCTTTTGACGCATTGATGAGTATGCGTTATGTGGCGGCATGGACAAGG
AAGAGTCTTCGATTTCGTAAAGTAACCACGCCGGCCCCTCGAGTGCTGGT
GTCAGGCGCGAGTGGGTTTGAAGTACGCCGCACCTGTGTCGTGGATGTAT
CCGTCACCCGTCCAATGATAAACATAGTACCGCTTGCAGCCGGCCTTGTT
CTGGCGTTTTGCATCAACATGGCCATGCTTGTGACGATTTCGTGGCGCGG
CAACGCGATGGACAGCGCCTTTCATTTGGTGCGAGAGGTGCTCGGACATG
ACACGGGTGCAAACCCTCTTCAAACTTCCACAAGGGGGGACGAGGTGTCG
CAGGTTGCGCTTCGAAAGTTTGTGTGCGCTGATGGCGTTTCTGGGCATGT
AGGGTTTGTCCAAGGCACGGGCGATACGAGTGTAGATGAGTACAGTGACG
CACACACTGTTGGTCGATGCATGCAGGTGGCCTGCCGTGGTGTTCGCTTT
GTCAGCGAAGCCTCGCCGAACGGAAAAAACTCGTTTATCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:1168634..1170175+

>Gvermi1878.t1 ID=Gvermi1878.t1|Name=Gvermi1878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1542bp|location=Sequence derived from alignment at ScGOVlb_1622:1168634..1170175+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAACCTCAAGAGCTCGACCTCCAACGTCTATTCAGTTTTGCTTCACTT
GTGCTCAGCTGAATCCGTCATGACTGCAGAACAGGTGGCGACGCGAGGCA
TGATGGACGGCTCTGATTTCACACCGCAGTTTACATTATCTACCATTCAG
TTTGAGAGTGAGCTGCTCAATAACATGATCACCTCTCTTTTAGCCACACT
CATCATCGCCAACATCGGAAGCGTCATCAAGCAAATAGTCTTTCTTACTG
GAAGAAAAGATTTTAACTATCTTTCCTTTGCGCGCTCGTTTGTCTTTCTC
AACTCGGATGACCCGCTGCGAATGCTGCATTGGTTGCGGGGTCGATACGA
CTTCCGAACAACGTCGCACAGGCCGTTCCGTTATGAGCTGCGGAAGCGTC
TTCTCGTTGGTCCGCTAATTGCACGCACACTAACCTTGGCCTTCAGCATT
GGTTCCATAGTTGTCGCGCTGCCTTCTGAAAAGCACCTTGATGCCTGCAG
CCGGGGGGATTATACCCTTGTTCAAACCAGGCCGAAGGCGCGAATCGTCG
CAATGAAACACGAGCTGGTGCATGTATGTGATGAGATACCCCTGGACACC
CGATTGGGCACTGTGAGATCTTCAGCTTCGTATTGTTCTTTTAGAGGGGT
GGATTTTAATTTACAGTTTCAATCCGACATGTCAAAACAATTATCTGAAA
TCAAGAACAAAGACGGAGTAGGGATGGTGCAAGTTTCTTACTCTAACAAT
GGCCTCCTCCACTCAACAATAATGACGCACAACAAAACGGAGTCATTAAC
ATCGTACGTGCAATGGAAGACGGAAGATGGACACATCTTTCGATCGACAA
TAGACTCATGGGACGCCGAAACGCATTTTCAAACAGTAGTGGACAGCTTG
AGATTCGTGACCAACCGAGAATGCAACATAATAGGAAAAAACATTGAGAA
TGGTAGTCCTGATTTCAATGTATCCAGCAGAATGACTGGAGCTATAGGCT
GTTCTTTTGACGCATTGATGAGTATGCGTTATGTGGCGGCATGGACAAGG
AAGAGTCTTCGATTTCGTAAAGTAACCACGCCGGCCCCTCGAGTGCTGGT
GTCAGGCGCGAGTGGGTTTGAAGTACGCCGCACCTGTGTCGTGGATGTAT
CCGTCACCCGTCCAATGATAAACATAGTACCGCTTGCAGCCGGCCTTGTT
CTGGCGTTTTGCATCAACATGGCCATGCTTGTGACGATTTCGTGGCGCGG
CAACGCGATGGACAGCGCCTTTCATTTGGTGCGAGAGGTGCTCGGACATG
ACACGGGTGCAAACCCTCTTCAAACTTCCACAAGGGGGGACGAGGTGTCG
CAGGTTGCGCTTCGAAAGTTTGTGTGCGCTGATGGCGTTTCTGGGCATGT
AGGGTTTGTCCAAGGCACGGGCGATACGAGTGTAGATGAGTACAGTGACG
CACACACTGTTGGTCGATGCATGCAGGTGGCCTGCCGTGGTGTTCGCTTT
GTCAGCGAAGCCTCGCCGAACGGAAAAAACTCGTTTATCTGA
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