Gvermi1870.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1870.t1
Unique NameGvermi1870.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:839127..840479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1870Gvermi1870Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 839127..840479 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1870.t1.start1Gvermi1870.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 839127..839129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1870.t1.CDS1Gvermi1870.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 839127..840479 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1870.t1.exon1Gvermi1870.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 839127..840479 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1870.t1.stop1Gvermi1870.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 840477..840479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1870.t1Gvermi1870.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 839127..840479 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1870.t1 ID=Gvermi1870.t1|Name=Gvermi1870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=451bp
MPPHSRMNRNTIDFCSNQEPALFNPPVYPQQNSAVHPNVQTHAPNTSNSS
PGHQGQYGQHQNHSNNLWDHHSKLAGAFSTAFKDASNRYSGNIYHSWPEK
REMFEDVAQNYHCSKAEAFQFLNKLFTGGARVTYRKLIKGQVQDYDTAMA
ILEMEFHNAPAQARIMAKLESFKFTDFTTGDSSQNDAYVRLTERIEEIFP
RIPPQIQHDYHKPRILARAVADQPWALATMDRTDEELPTYSNISSALASI
LQKHTSRSAAGEFVIPHDNGTFHTNPRYGRSRPRWNEAHNSSKFRECDHR
NRSHDQQYRPRRKFCPIRRHYHNPKGNHNAYLVSEDDLEPIKLDEHEDIQ
LVTEASPGDTRTPPDSVEHLPADEAQPSEVHFLSELSNSANFHANIGTSA
FSDQPFERRVTLAYILPTSHGQSIWINHPLITTLHCHPLLNHENPQITRR
*
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spliced messenger RNA

>Gvermi1870.t1 ID=Gvermi1870.t1|Name=Gvermi1870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_1622:839127..840479+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCCCACTCACGTATGAATCGTAACACTATCGATTTCTGCTCGAA
CCAGGAACCGGCACTCTTCAACCCCCCGGTCTACCCTCAGCAAAATTCCG
CTGTTCATCCCAATGTTCAAACGCACGCTCCGAATACTTCTAATTCGTCA
CCGGGACACCAAGGCCAATATGGCCAGCACCAGAACCATTCCAACAATCT
TTGGGACCATCACAGCAAATTAGCCGGAGCCTTCTCGACAGCCTTCAAGG
ACGCATCCAACCGTTACTCTGGTAACATTTATCATTCATGGCCAGAAAAA
CGTGAAATGTTCGAGGACGTTGCGCAAAACTACCACTGTTCCAAAGCTGA
AGCCTTTCAGTTTCTGAACAAACTGTTCACCGGCGGCGCTCGTGTAACTT
ACAGGAAACTGATCAAAGGCCAAGTACAGGACTACGACACAGCCATGGCC
ATTCTCGAAATGGAGTTCCACAACGCACCTGCACAAGCCCGAATTATGGC
AAAACTTGAATCCTTCAAGTTCACAGACTTCACTACTGGAGACTCCTCTC
AAAATGACGCCTACGTGAGACTCACTGAACGCATTGAAGAGATATTTCCC
CGTATCCCTCCCCAAATACAGCACGATTATCACAAGCCTCGCATCCTCGC
CCGCGCCGTTGCCGACCAACCATGGGCACTCGCTACAATGGACCGTACGG
ACGAAGAACTGCCCACATACTCCAACATCTCCTCCGCTCTAGCAAGCATA
CTCCAAAAGCACACTTCTCGGTCCGCCGCGGGTGAATTCGTCATTCCACA
TGACAACGGCACATTCCACACCAATCCCAGATACGGCCGATCTAGACCCC
GATGGAACGAGGCCCACAACTCATCAAAATTCCGGGAATGCGATCACCGC
AACCGAAGCCATGATCAACAATACAGACCGCGACGGAAATTTTGCCCTAT
TCGACGCCATTACCACAACCCCAAAGGCAATCACAACGCCTATCTGGTAT
CGGAGGACGATCTGGAACCAATTAAACTGGACGAGCATGAGGACATTCAA
CTGGTCACGGAGGCCTCTCCAGGCGACACCAGGACACCACCCGATAGTGT
TGAACACCTCCCAGCCGATGAAGCGCAACCGAGTGAAGTTCATTTCCTCA
GTGAATTGTCCAACTCCGCAAACTTCCACGCAAACATAGGAACGTCAGCA
TTCTCCGACCAGCCTTTTGAAAGGAGAGTCACTCTGGCCTACATCCTCCC
AACTTCTCACGGCCAATCGATATGGATAAACCACCCGCTGATCACGACTC
TTCACTGCCACCCCCTCCTGAACCACGAGAACCCCCAGATTACCCGCCGA
TAG
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protein sequence of Gvermi1870.t1

>Gvermi1870.t1 ID=Gvermi1870.t1|Name=Gvermi1870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=451bp
MPPHSRMNRNTIDFCSNQEPALFNPPVYPQQNSAVHPNVQTHAPNTSNSS
PGHQGQYGQHQNHSNNLWDHHSKLAGAFSTAFKDASNRYSGNIYHSWPEK
REMFEDVAQNYHCSKAEAFQFLNKLFTGGARVTYRKLIKGQVQDYDTAMA
ILEMEFHNAPAQARIMAKLESFKFTDFTTGDSSQNDAYVRLTERIEEIFP
RIPPQIQHDYHKPRILARAVADQPWALATMDRTDEELPTYSNISSALASI
LQKHTSRSAAGEFVIPHDNGTFHTNPRYGRSRPRWNEAHNSSKFRECDHR
NRSHDQQYRPRRKFCPIRRHYHNPKGNHNAYLVSEDDLEPIKLDEHEDIQ
LVTEASPGDTRTPPDSVEHLPADEAQPSEVHFLSELSNSANFHANIGTSA
FSDQPFERRVTLAYILPTSHGQSIWINHPLITTLHCHPLLNHENPQITRR
*
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mRNA from alignment at ScGOVlb_1622:839127..840479+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1870.t1 ID=Gvermi1870.t1|Name=Gvermi1870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_1622:839127..840479+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCCCACTCACGTATGAATCGTAACACTATCGATTTCTGCTCGAA
CCAGGAACCGGCACTCTTCAACCCCCCGGTCTACCCTCAGCAAAATTCCG
CTGTTCATCCCAATGTTCAAACGCACGCTCCGAATACTTCTAATTCGTCA
CCGGGACACCAAGGCCAATATGGCCAGCACCAGAACCATTCCAACAATCT
TTGGGACCATCACAGCAAATTAGCCGGAGCCTTCTCGACAGCCTTCAAGG
ACGCATCCAACCGTTACTCTGGTAACATTTATCATTCATGGCCAGAAAAA
CGTGAAATGTTCGAGGACGTTGCGCAAAACTACCACTGTTCCAAAGCTGA
AGCCTTTCAGTTTCTGAACAAACTGTTCACCGGCGGCGCTCGTGTAACTT
ACAGGAAACTGATCAAAGGCCAAGTACAGGACTACGACACAGCCATGGCC
ATTCTCGAAATGGAGTTCCACAACGCACCTGCACAAGCCCGAATTATGGC
AAAACTTGAATCCTTCAAGTTCACAGACTTCACTACTGGAGACTCCTCTC
AAAATGACGCCTACGTGAGACTCACTGAACGCATTGAAGAGATATTTCCC
CGTATCCCTCCCCAAATACAGCACGATTATCACAAGCCTCGCATCCTCGC
CCGCGCCGTTGCCGACCAACCATGGGCACTCGCTACAATGGACCGTACGG
ACGAAGAACTGCCCACATACTCCAACATCTCCTCCGCTCTAGCAAGCATA
CTCCAAAAGCACACTTCTCGGTCCGCCGCGGGTGAATTCGTCATTCCACA
TGACAACGGCACATTCCACACCAATCCCAGATACGGCCGATCTAGACCCC
GATGGAACGAGGCCCACAACTCATCAAAATTCCGGGAATGCGATCACCGC
AACCGAAGCCATGATCAACAATACAGACCGCGACGGAAATTTTGCCCTAT
TCGACGCCATTACCACAACCCCAAAGGCAATCACAACGCCTATCTGGTAT
CGGAGGACGATCTGGAACCAATTAAACTGGACGAGCATGAGGACATTCAA
CTGGTCACGGAGGCCTCTCCAGGCGACACCAGGACACCACCCGATAGTGT
TGAACACCTCCCAGCCGATGAAGCGCAACCGAGTGAAGTTCATTTCCTCA
GTGAATTGTCCAACTCCGCAAACTTCCACGCAAACATAGGAACGTCAGCA
TTCTCCGACCAGCCTTTTGAAAGGAGAGTCACTCTGGCCTACATCCTCCC
AACTTCTCACGGCCAATCGATATGGATAAACCACCCGCTGATCACGACTC
TTCACTGCCACCCCCTCCTGAACCACGAGAACCCCCAGATTACCCGCCGA
TAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:839127..840479+

>Gvermi1870.t1 ID=Gvermi1870.t1|Name=Gvermi1870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1353bp|location=Sequence derived from alignment at ScGOVlb_1622:839127..840479+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCCCACTCACGTATGAATCGTAACACTATCGATTTCTGCTCGAA
CCAGGAACCGGCACTCTTCAACCCCCCGGTCTACCCTCAGCAAAATTCCG
CTGTTCATCCCAATGTTCAAACGCACGCTCCGAATACTTCTAATTCGTCA
CCGGGACACCAAGGCCAATATGGCCAGCACCAGAACCATTCCAACAATCT
TTGGGACCATCACAGCAAATTAGCCGGAGCCTTCTCGACAGCCTTCAAGG
ACGCATCCAACCGTTACTCTGGTAACATTTATCATTCATGGCCAGAAAAA
CGTGAAATGTTCGAGGACGTTGCGCAAAACTACCACTGTTCCAAAGCTGA
AGCCTTTCAGTTTCTGAACAAACTGTTCACCGGCGGCGCTCGTGTAACTT
ACAGGAAACTGATCAAAGGCCAAGTACAGGACTACGACACAGCCATGGCC
ATTCTCGAAATGGAGTTCCACAACGCACCTGCACAAGCCCGAATTATGGC
AAAACTTGAATCCTTCAAGTTCACAGACTTCACTACTGGAGACTCCTCTC
AAAATGACGCCTACGTGAGACTCACTGAACGCATTGAAGAGATATTTCCC
CGTATCCCTCCCCAAATACAGCACGATTATCACAAGCCTCGCATCCTCGC
CCGCGCCGTTGCCGACCAACCATGGGCACTCGCTACAATGGACCGTACGG
ACGAAGAACTGCCCACATACTCCAACATCTCCTCCGCTCTAGCAAGCATA
CTCCAAAAGCACACTTCTCGGTCCGCCGCGGGTGAATTCGTCATTCCACA
TGACAACGGCACATTCCACACCAATCCCAGATACGGCCGATCTAGACCCC
GATGGAACGAGGCCCACAACTCATCAAAATTCCGGGAATGCGATCACCGC
AACCGAAGCCATGATCAACAATACAGACCGCGACGGAAATTTTGCCCTAT
TCGACGCCATTACCACAACCCCAAAGGCAATCACAACGCCTATCTGGTAT
CGGAGGACGATCTGGAACCAATTAAACTGGACGAGCATGAGGACATTCAA
CTGGTCACGGAGGCCTCTCCAGGCGACACCAGGACACCACCCGATAGTGT
TGAACACCTCCCAGCCGATGAAGCGCAACCGAGTGAAGTTCATTTCCTCA
GTGAATTGTCCAACTCCGCAAACTTCCACGCAAACATAGGAACGTCAGCA
TTCTCCGACCAGCCTTTTGAAAGGAGAGTCACTCTGGCCTACATCCTCCC
AACTTCTCACGGCCAATCGATATGGATAAACCACCCGCTGATCACGACTC
TTCACTGCCACCCCCTCCTGAACCACGAGAACCCCCAGATTACCCGCCGA
TAG
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