Gvermi1866.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1866.t1
Unique NameGvermi1866.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:717197..718780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1866Gvermi1866Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 717197..718780 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1866.t1.stop1Gvermi1866.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 717197..717199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1866.t1.CDS1Gvermi1866.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 717197..718780 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1866.t1.exon1Gvermi1866.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 717197..718780 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1866.t1.start1Gvermi1866.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 718778..718780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1866.t1Gvermi1866.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 717197..718780 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1866.t1 ID=Gvermi1866.t1|Name=Gvermi1866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp
MDFLFACQEMKMIFVSYLILLSFAATLAAYPVRKEPNQASFRYLFDRPNV
SQSIAVRKKADTNGSKRNTVPFSFQEFSAIKLLVGGSKSFNSVKSISPVE
QEKISLGVLNLPTYRLGLTGEPCESDFDCKDDRFCGSGLDVTVPRPCATE
DFYCWCASLDDTCFNSSECDDGEKCFLLQDVTVPTCLSTIVIEFAKGSII
ENEVDESDPEVVGDDIENSVPELEGNASSTGFQGGFNGDPCSTSQDCQGN
RQCQIFEQENSLKPCKPGAQICLCFTPGGAPCMHNSDCAMQEVCFDFPNS
STDVCLSKKFAKKLIDVSLENGGAEEYDSAPSEINPPPLLADECKNEADC
NTGEKCVNVDGILKCVLVQGDEAGEADQINELDLPDNSDEVDESDEANKA
DEIKEETPESNPEGNSAVCVATHHLAGFGQHEMIYSKNIYARVLCDMHNN
CATPGHLVKYRGKPMMMSTYCGIKTCSEKISEVNSPKFTRRKLVASNTND
LVFTVFAARYNSKIEEVMLTLILRMGI*
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spliced messenger RNA

>Gvermi1866.t1 ID=Gvermi1866.t1|Name=Gvermi1866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_1622:717197..718780- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTCCTGTTTGCATGCCAAGAGATGAAAATGATTTTCGTTTCATA
CCTGATACTCCTGTCTTTCGCTGCCACTTTAGCTGCTTATCCAGTCCGCA
AGGAACCTAACCAGGCTTCTTTTCGATATCTGTTTGATAGACCAAACGTT
TCGCAATCGATCGCTGTGCGAAAGAAAGCCGATACCAATGGATCTAAACG
AAACACAGTTCCTTTTTCATTCCAGGAATTTTCCGCCATCAAATTGTTAG
TGGGTGGTTCAAAATCGTTCAATAGCGTCAAGTCTATCTCTCCTGTCGAG
CAAGAGAAAATCAGTCTAGGGGTTCTGAATCTTCCGACATACCGCTTAGG
GCTGACTGGAGAACCATGCGAGTCAGATTTTGATTGCAAAGATGATCGCT
TCTGTGGATCAGGACTAGACGTTACTGTACCCAGACCCTGCGCGACTGAA
GACTTTTATTGTTGGTGTGCATCCCTAGACGACACTTGTTTCAACAGTTC
TGAATGTGATGATGGAGAAAAATGCTTTCTGCTTCAAGATGTAACAGTTC
CTACATGTCTTTCAACAATAGTAATAGAATTTGCGAAAGGATCAATTATT
GAAAATGAAGTTGATGAAAGCGATCCTGAAGTGGTTGGAGACGATATCGA
AAACAGTGTTCCTGAATTGGAGGGAAATGCTTCGTCAACGGGTTTCCAAG
GAGGATTTAATGGAGATCCGTGCTCTACATCACAAGATTGCCAGGGTAAT
CGTCAATGCCAAATCTTCGAACAAGAAAATTCCCTGAAACCTTGCAAACC
AGGGGCTCAGATTTGCTTATGCTTCACTCCCGGTGGGGCGCCTTGCATGC
ATAATTCAGACTGTGCTATGCAAGAAGTCTGCTTTGATTTTCCAAACAGC
TCAACCGACGTATGTCTTTCAAAGAAATTTGCGAAGAAGTTAATCGACGT
GAGCCTCGAGAACGGTGGTGCTGAAGAATATGACTCTGCACCAAGCGAAA
TTAATCCTCCACCTCTTCTAGCAGATGAGTGCAAAAATGAGGCTGATTGT
AATACTGGTGAGAAATGCGTGAATGTTGACGGTATTCTCAAATGTGTTCT
CGTTCAAGGAGATGAAGCAGGTGAAGCAGATCAGATAAATGAGTTGGATC
TACCTGACAACTCAGACGAAGTAGATGAATCGGATGAAGCAAACAAAGCA
GATGAAATAAAAGAAGAAACTCCAGAAAGCAATCCAGAAGGAAATTCTGC
TGTTTGCGTTGCAACACATCATCTTGCTGGGTTCGGTCAACACGAAATGA
TTTATTCCAAGAATATTTATGCAAGAGTGCTGTGTGACATGCACAATAAT
TGCGCAACGCCTGGTCATTTGGTCAAGTACAGAGGAAAACCGATGATGAT
GAGCACATACTGTGGAATTAAGACTTGTTCGGAAAAGATATCTGAAGTGA
ACAGTCCAAAGTTCACCCGTCGAAAGCTCGTGGCTTCAAACACAAATGAT
CTAGTTTTCACTGTCTTTGCGGCACGGTACAACAGCAAGATTGAAGAAGT
GATGCTTACTTTGATTCTCCGCATGGGTATCTGA
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protein sequence of Gvermi1866.t1

>Gvermi1866.t1 ID=Gvermi1866.t1|Name=Gvermi1866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=528bp
MDFLFACQEMKMIFVSYLILLSFAATLAAYPVRKEPNQASFRYLFDRPNV
SQSIAVRKKADTNGSKRNTVPFSFQEFSAIKLLVGGSKSFNSVKSISPVE
QEKISLGVLNLPTYRLGLTGEPCESDFDCKDDRFCGSGLDVTVPRPCATE
DFYCWCASLDDTCFNSSECDDGEKCFLLQDVTVPTCLSTIVIEFAKGSII
ENEVDESDPEVVGDDIENSVPELEGNASSTGFQGGFNGDPCSTSQDCQGN
RQCQIFEQENSLKPCKPGAQICLCFTPGGAPCMHNSDCAMQEVCFDFPNS
STDVCLSKKFAKKLIDVSLENGGAEEYDSAPSEINPPPLLADECKNEADC
NTGEKCVNVDGILKCVLVQGDEAGEADQINELDLPDNSDEVDESDEANKA
DEIKEETPESNPEGNSAVCVATHHLAGFGQHEMIYSKNIYARVLCDMHNN
CATPGHLVKYRGKPMMMSTYCGIKTCSEKISEVNSPKFTRRKLVASNTND
LVFTVFAARYNSKIEEVMLTLILRMGI*
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mRNA from alignment at ScGOVlb_1622:717197..718780-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1866.t1 ID=Gvermi1866.t1|Name=Gvermi1866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_1622:717197..718780- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTCCTGTTTGCATGCCAAGAGATGAAAATGATTTTCGTTTCATA
CCTGATACTCCTGTCTTTCGCTGCCACTTTAGCTGCTTATCCAGTCCGCA
AGGAACCTAACCAGGCTTCTTTTCGATATCTGTTTGATAGACCAAACGTT
TCGCAATCGATCGCTGTGCGAAAGAAAGCCGATACCAATGGATCTAAACG
AAACACAGTTCCTTTTTCATTCCAGGAATTTTCCGCCATCAAATTGTTAG
TGGGTGGTTCAAAATCGTTCAATAGCGTCAAGTCTATCTCTCCTGTCGAG
CAAGAGAAAATCAGTCTAGGGGTTCTGAATCTTCCGACATACCGCTTAGG
GCTGACTGGAGAACCATGCGAGTCAGATTTTGATTGCAAAGATGATCGCT
TCTGTGGATCAGGACTAGACGTTACTGTACCCAGACCCTGCGCGACTGAA
GACTTTTATTGTTGGTGTGCATCCCTAGACGACACTTGTTTCAACAGTTC
TGAATGTGATGATGGAGAAAAATGCTTTCTGCTTCAAGATGTAACAGTTC
CTACATGTCTTTCAACAATAGTAATAGAATTTGCGAAAGGATCAATTATT
GAAAATGAAGTTGATGAAAGCGATCCTGAAGTGGTTGGAGACGATATCGA
AAACAGTGTTCCTGAATTGGAGGGAAATGCTTCGTCAACGGGTTTCCAAG
GAGGATTTAATGGAGATCCGTGCTCTACATCACAAGATTGCCAGGGTAAT
CGTCAATGCCAAATCTTCGAACAAGAAAATTCCCTGAAACCTTGCAAACC
AGGGGCTCAGATTTGCTTATGCTTCACTCCCGGTGGGGCGCCTTGCATGC
ATAATTCAGACTGTGCTATGCAAGAAGTCTGCTTTGATTTTCCAAACAGC
TCAACCGACGTATGTCTTTCAAAGAAATTTGCGAAGAAGTTAATCGACGT
GAGCCTCGAGAACGGTGGTGCTGAAGAATATGACTCTGCACCAAGCGAAA
TTAATCCTCCACCTCTTCTAGCAGATGAGTGCAAAAATGAGGCTGATTGT
AATACTGGTGAGAAATGCGTGAATGTTGACGGTATTCTCAAATGTGTTCT
CGTTCAAGGAGATGAAGCAGGTGAAGCAGATCAGATAAATGAGTTGGATC
TACCTGACAACTCAGACGAAGTAGATGAATCGGATGAAGCAAACAAAGCA
GATGAAATAAAAGAAGAAACTCCAGAAAGCAATCCAGAAGGAAATTCTGC
TGTTTGCGTTGCAACACATCATCTTGCTGGGTTCGGTCAACACGAAATGA
TTTATTCCAAGAATATTTATGCAAGAGTGCTGTGTGACATGCACAATAAT
TGCGCAACGCCTGGTCATTTGGTCAAGTACAGAGGAAAACCGATGATGAT
GAGCACATACTGTGGAATTAAGACTTGTTCGGAAAAGATATCTGAAGTGA
ACAGTCCAAAGTTCACCCGTCGAAAGCTCGTGGCTTCAAACACAAATGAT
CTAGTTTTCACTGTCTTTGCGGCACGGTACAACAGCAAGATTGAAGAAGT
GATGCTTACTTTGATTCTCCGCATGGGTATCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:717197..718780-

>Gvermi1866.t1 ID=Gvermi1866.t1|Name=Gvermi1866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1584bp|location=Sequence derived from alignment at ScGOVlb_1622:717197..718780- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTCCTGTTTGCATGCCAAGAGATGAAAATGATTTTCGTTTCATA
CCTGATACTCCTGTCTTTCGCTGCCACTTTAGCTGCTTATCCAGTCCGCA
AGGAACCTAACCAGGCTTCTTTTCGATATCTGTTTGATAGACCAAACGTT
TCGCAATCGATCGCTGTGCGAAAGAAAGCCGATACCAATGGATCTAAACG
AAACACAGTTCCTTTTTCATTCCAGGAATTTTCCGCCATCAAATTGTTAG
TGGGTGGTTCAAAATCGTTCAATAGCGTCAAGTCTATCTCTCCTGTCGAG
CAAGAGAAAATCAGTCTAGGGGTTCTGAATCTTCCGACATACCGCTTAGG
GCTGACTGGAGAACCATGCGAGTCAGATTTTGATTGCAAAGATGATCGCT
TCTGTGGATCAGGACTAGACGTTACTGTACCCAGACCCTGCGCGACTGAA
GACTTTTATTGTTGGTGTGCATCCCTAGACGACACTTGTTTCAACAGTTC
TGAATGTGATGATGGAGAAAAATGCTTTCTGCTTCAAGATGTAACAGTTC
CTACATGTCTTTCAACAATAGTAATAGAATTTGCGAAAGGATCAATTATT
GAAAATGAAGTTGATGAAAGCGATCCTGAAGTGGTTGGAGACGATATCGA
AAACAGTGTTCCTGAATTGGAGGGAAATGCTTCGTCAACGGGTTTCCAAG
GAGGATTTAATGGAGATCCGTGCTCTACATCACAAGATTGCCAGGGTAAT
CGTCAATGCCAAATCTTCGAACAAGAAAATTCCCTGAAACCTTGCAAACC
AGGGGCTCAGATTTGCTTATGCTTCACTCCCGGTGGGGCGCCTTGCATGC
ATAATTCAGACTGTGCTATGCAAGAAGTCTGCTTTGATTTTCCAAACAGC
TCAACCGACGTATGTCTTTCAAAGAAATTTGCGAAGAAGTTAATCGACGT
GAGCCTCGAGAACGGTGGTGCTGAAGAATATGACTCTGCACCAAGCGAAA
TTAATCCTCCACCTCTTCTAGCAGATGAGTGCAAAAATGAGGCTGATTGT
AATACTGGTGAGAAATGCGTGAATGTTGACGGTATTCTCAAATGTGTTCT
CGTTCAAGGAGATGAAGCAGGTGAAGCAGATCAGATAAATGAGTTGGATC
TACCTGACAACTCAGACGAAGTAGATGAATCGGATGAAGCAAACAAAGCA
GATGAAATAAAAGAAGAAACTCCAGAAAGCAATCCAGAAGGAAATTCTGC
TGTTTGCGTTGCAACACATCATCTTGCTGGGTTCGGTCAACACGAAATGA
TTTATTCCAAGAATATTTATGCAAGAGTGCTGTGTGACATGCACAATAAT
TGCGCAACGCCTGGTCATTTGGTCAAGTACAGAGGAAAACCGATGATGAT
GAGCACATACTGTGGAATTAAGACTTGTTCGGAAAAGATATCTGAAGTGA
ACAGTCCAAAGTTCACCCGTCGAAAGCTCGTGGCTTCAAACACAAATGAT
CTAGTTTTCACTGTCTTTGCGGCACGGTACAACAGCAAGATTGAAGAAGT
GATGCTTACTTTGATTCTCCGCATGGGTATCTGA
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