Gvermi1862.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1862.t1
Unique NameGvermi1862.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:408692..410137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1862Gvermi1862Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 408692..410137 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1862.t1.stop1Gvermi1862.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 408692..408694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1862.t1.CDS1Gvermi1862.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 408692..410137 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1862.t1.exon1Gvermi1862.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 408692..410137 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1862.t1.start1Gvermi1862.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 410135..410137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1862.t1Gvermi1862.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 408692..410137 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1862.t1 ID=Gvermi1862.t1|Name=Gvermi1862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=482bp
MSDPTFLAFGAFETTAFCTSIIVAWYSLISNPSGRQSAYNGAEYQIFAGW
RLALISIFCQVILMAIVLVRQVSTSPAVPSNTIAWLLLLMIAPWAPVAGK
VRDTLTSGARVRRMMKRRLARNELAAILRDRFKFGQRSIAMPSIIHHASG
RLPLFPRQALMENVQLAPFVDALRREATMAAHLDCGYSLDLGALWAMNQS
LQPTSVSRRRLLVWKVVSNVDLLARLWTGRSCEVNVDVMPDTVSVVERAR
YLDIVDLLQQGGTLSDELVKRAMKRFCHRCKLATRCAVEIFLESSERGHT
DLRGGEWLMNVGMDWAGSFERVIDVMWEACFMDCKAFRVHGKDEDASPSY
RDRSKVTTTKMLTLLFLMARSVVSVKEDNSVFADICNVIADGPFRMEWWR
RYWARVCEKIIARNGGLIIVDEKCRSVFKDCLRELVDEDMLKIVHLLLQN
GVCDPMCGDNGCFLHQARVVASAYMPNNKNA*
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spliced messenger RNA

>Gvermi1862.t1 ID=Gvermi1862.t1|Name=Gvermi1862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_1622:408692..410137- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGATCCCACCTTCCTCGCTTTTGGCGCTTTCGAGACCACCGCCTT
CTGCACCTCAATCATCGTTGCATGGTACTCACTCATATCCAATCCGTCGG
GGCGCCAGAGCGCCTATAACGGCGCCGAATACCAAATCTTTGCCGGATGG
CGTCTCGCCCTTATCTCCATCTTCTGCCAAGTCATCCTTATGGCCATTGT
CCTGGTTCGGCAAGTCAGCACTTCTCCCGCGGTGCCGTCCAACACTATCG
CTTGGCTGCTGCTGCTCATGATTGCCCCCTGGGCTCCCGTGGCCGGCAAA
GTCAGAGACACGCTCACCTCCGGTGCCCGCGTGCGCCGCATGATGAAACG
GCGCCTGGCCCGCAACGAACTGGCCGCCATTCTCCGCGACCGTTTTAAGT
TTGGACAGCGCAGCATTGCCATGCCATCCATCATTCACCACGCAAGTGGA
CGACTTCCGCTCTTTCCGAGACAGGCATTGATGGAAAATGTGCAGCTGGC
GCCGTTCGTGGATGCGCTCAGAAGGGAGGCCACGATGGCCGCCCATCTGG
ACTGCGGCTACTCCCTTGATCTGGGCGCGCTGTGGGCGATGAACCAGAGT
TTACAACCGACATCAGTGTCGAGAAGGAGGCTGCTTGTCTGGAAAGTGGT
GTCAAACGTCGACTTGCTGGCGAGACTATGGACCGGGCGCTCGTGTGAGG
TGAACGTTGACGTCATGCCCGATACGGTTTCCGTTGTGGAACGGGCACGG
TATCTAGACATAGTGGACTTGCTGCAACAGGGAGGCACACTAAGTGACGA
GTTGGTGAAGAGAGCAATGAAGCGCTTTTGCCACCGATGTAAGCTCGCCA
CCCGCTGCGCTGTGGAAATATTTCTTGAGAGCTCGGAGAGAGGGCATACG
GATCTTAGGGGGGGGGAGTGGTTGATGAATGTGGGGATGGACTGGGCGGG
TAGCTTTGAGAGGGTTATTGACGTCATGTGGGAGGCTTGTTTCATGGACT
GCAAAGCTTTTCGGGTGCACGGAAAAGACGAAGACGCGAGCCCATCGTAC
AGAGATCGCTCCAAGGTGACCACCACCAAGATGCTCACATTATTGTTCCT
CATGGCTCGCAGTGTGGTGAGCGTGAAGGAGGACAACTCCGTTTTTGCTG
ATATCTGCAATGTCATCGCAGACGGGCCCTTCCGCATGGAATGGTGGAGA
AGATATTGGGCCCGGGTGTGTGAAAAGATCATTGCAAGAAATGGAGGTCT
CATTATCGTTGACGAAAAATGCAGAAGTGTTTTCAAAGATTGTTTGCGGG
AGTTGGTCGATGAGGACATGCTCAAGATTGTGCATCTCTTGTTGCAGAAT
GGTGTATGTGACCCTATGTGTGGAGATAATGGCTGTTTTCTTCACCAAGC
TCGTGTAGTGGCCTCCGCGTACATGCCAAATAACAAAAATGCGTGA
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protein sequence of Gvermi1862.t1

>Gvermi1862.t1 ID=Gvermi1862.t1|Name=Gvermi1862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=482bp
MSDPTFLAFGAFETTAFCTSIIVAWYSLISNPSGRQSAYNGAEYQIFAGW
RLALISIFCQVILMAIVLVRQVSTSPAVPSNTIAWLLLLMIAPWAPVAGK
VRDTLTSGARVRRMMKRRLARNELAAILRDRFKFGQRSIAMPSIIHHASG
RLPLFPRQALMENVQLAPFVDALRREATMAAHLDCGYSLDLGALWAMNQS
LQPTSVSRRRLLVWKVVSNVDLLARLWTGRSCEVNVDVMPDTVSVVERAR
YLDIVDLLQQGGTLSDELVKRAMKRFCHRCKLATRCAVEIFLESSERGHT
DLRGGEWLMNVGMDWAGSFERVIDVMWEACFMDCKAFRVHGKDEDASPSY
RDRSKVTTTKMLTLLFLMARSVVSVKEDNSVFADICNVIADGPFRMEWWR
RYWARVCEKIIARNGGLIIVDEKCRSVFKDCLRELVDEDMLKIVHLLLQN
GVCDPMCGDNGCFLHQARVVASAYMPNNKNA*
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mRNA from alignment at ScGOVlb_1622:408692..410137-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1862.t1 ID=Gvermi1862.t1|Name=Gvermi1862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_1622:408692..410137- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGATCCCACCTTCCTCGCTTTTGGCGCTTTCGAGACCACCGCCTT
CTGCACCTCAATCATCGTTGCATGGTACTCACTCATATCCAATCCGTCGG
GGCGCCAGAGCGCCTATAACGGCGCCGAATACCAAATCTTTGCCGGATGG
CGTCTCGCCCTTATCTCCATCTTCTGCCAAGTCATCCTTATGGCCATTGT
CCTGGTTCGGCAAGTCAGCACTTCTCCCGCGGTGCCGTCCAACACTATCG
CTTGGCTGCTGCTGCTCATGATTGCCCCCTGGGCTCCCGTGGCCGGCAAA
GTCAGAGACACGCTCACCTCCGGTGCCCGCGTGCGCCGCATGATGAAACG
GCGCCTGGCCCGCAACGAACTGGCCGCCATTCTCCGCGACCGTTTTAAGT
TTGGACAGCGCAGCATTGCCATGCCATCCATCATTCACCACGCAAGTGGA
CGACTTCCGCTCTTTCCGAGACAGGCATTGATGGAAAATGTGCAGCTGGC
GCCGTTCGTGGATGCGCTCAGAAGGGAGGCCACGATGGCCGCCCATCTGG
ACTGCGGCTACTCCCTTGATCTGGGCGCGCTGTGGGCGATGAACCAGAGT
TTACAACCGACATCAGTGTCGAGAAGGAGGCTGCTTGTCTGGAAAGTGGT
GTCAAACGTCGACTTGCTGGCGAGACTATGGACCGGGCGCTCGTGTGAGG
TGAACGTTGACGTCATGCCCGATACGGTTTCCGTTGTGGAACGGGCACGG
TATCTAGACATAGTGGACTTGCTGCAACAGGGAGGCACACTAAGTGACGA
GTTGGTGAAGAGAGCAATGAAGCGCTTTTGCCACCGATGTAAGCTCGCCA
CCCGCTGCGCTGTGGAAATATTTCTTGAGAGCTCGGAGAGAGGGCATACG
GATCTTAGGGGGGGGGAGTGGTTGATGAATGTGGGGATGGACTGGGCGGG
TAGCTTTGAGAGGGTTATTGACGTCATGTGGGAGGCTTGTTTCATGGACT
GCAAAGCTTTTCGGGTGCACGGAAAAGACGAAGACGCGAGCCCATCGTAC
AGAGATCGCTCCAAGGTGACCACCACCAAGATGCTCACATTATTGTTCCT
CATGGCTCGCAGTGTGGTGAGCGTGAAGGAGGACAACTCCGTTTTTGCTG
ATATCTGCAATGTCATCGCAGACGGGCCCTTCCGCATGGAATGGTGGAGA
AGATATTGGGCCCGGGTGTGTGAAAAGATCATTGCAAGAAATGGAGGTCT
CATTATCGTTGACGAAAAATGCAGAAGTGTTTTCAAAGATTGTTTGCGGG
AGTTGGTCGATGAGGACATGCTCAAGATTGTGCATCTCTTGTTGCAGAAT
GGTGTATGTGACCCTATGTGTGGAGATAATGGCTGTTTTCTTCACCAAGC
TCGTGTAGTGGCCTCCGCGTACATGCCAAATAACAAAAATGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:408692..410137-

>Gvermi1862.t1 ID=Gvermi1862.t1|Name=Gvermi1862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1446bp|location=Sequence derived from alignment at ScGOVlb_1622:408692..410137- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGATCCCACCTTCCTCGCTTTTGGCGCTTTCGAGACCACCGCCTT
CTGCACCTCAATCATCGTTGCATGGTACTCACTCATATCCAATCCGTCGG
GGCGCCAGAGCGCCTATAACGGCGCCGAATACCAAATCTTTGCCGGATGG
CGTCTCGCCCTTATCTCCATCTTCTGCCAAGTCATCCTTATGGCCATTGT
CCTGGTTCGGCAAGTCAGCACTTCTCCCGCGGTGCCGTCCAACACTATCG
CTTGGCTGCTGCTGCTCATGATTGCCCCCTGGGCTCCCGTGGCCGGCAAA
GTCAGAGACACGCTCACCTCCGGTGCCCGCGTGCGCCGCATGATGAAACG
GCGCCTGGCCCGCAACGAACTGGCCGCCATTCTCCGCGACCGTTTTAAGT
TTGGACAGCGCAGCATTGCCATGCCATCCATCATTCACCACGCAAGTGGA
CGACTTCCGCTCTTTCCGAGACAGGCATTGATGGAAAATGTGCAGCTGGC
GCCGTTCGTGGATGCGCTCAGAAGGGAGGCCACGATGGCCGCCCATCTGG
ACTGCGGCTACTCCCTTGATCTGGGCGCGCTGTGGGCGATGAACCAGAGT
TTACAACCGACATCAGTGTCGAGAAGGAGGCTGCTTGTCTGGAAAGTGGT
GTCAAACGTCGACTTGCTGGCGAGACTATGGACCGGGCGCTCGTGTGAGG
TGAACGTTGACGTCATGCCCGATACGGTTTCCGTTGTGGAACGGGCACGG
TATCTAGACATAGTGGACTTGCTGCAACAGGGAGGCACACTAAGTGACGA
GTTGGTGAAGAGAGCAATGAAGCGCTTTTGCCACCGATGTAAGCTCGCCA
CCCGCTGCGCTGTGGAAATATTTCTTGAGAGCTCGGAGAGAGGGCATACG
GATCTTAGGGGGGGGGAGTGGTTGATGAATGTGGGGATGGACTGGGCGGG
TAGCTTTGAGAGGGTTATTGACGTCATGTGGGAGGCTTGTTTCATGGACT
GCAAAGCTTTTCGGGTGCACGGAAAAGACGAAGACGCGAGCCCATCGTAC
AGAGATCGCTCCAAGGTGACCACCACCAAGATGCTCACATTATTGTTCCT
CATGGCTCGCAGTGTGGTGAGCGTGAAGGAGGACAACTCCGTTTTTGCTG
ATATCTGCAATGTCATCGCAGACGGGCCCTTCCGCATGGAATGGTGGAGA
AGATATTGGGCCCGGGTGTGTGAAAAGATCATTGCAAGAAATGGAGGTCT
CATTATCGTTGACGAAAAATGCAGAAGTGTTTTCAAAGATTGTTTGCGGG
AGTTGGTCGATGAGGACATGCTCAAGATTGTGCATCTCTTGTTGCAGAAT
GGTGTATGTGACCCTATGTGTGGAGATAATGGCTGTTTTCTTCACCAAGC
TCGTGTAGTGGCCTCCGCGTACATGCCAAATAACAAAAATGCGTGA
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