Gvermi1861.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1861.t1
Unique NameGvermi1861.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:374477..375078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1861Gvermi1861Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 374477..375078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1861.t1Gvermi1861.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 374477..375078 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1861.t1.start1Gvermi1861.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 374477..374479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1861.t1.CDS1Gvermi1861.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 374477..374561 +
Gvermi1861.t1.CDS2Gvermi1861.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 374672..375078 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1861.t1.exon1Gvermi1861.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 374477..374561 +
Gvermi1861.t1.exon2Gvermi1861.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 374672..375078 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1861.t1.intron1Gvermi1861.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 374562..374671 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1861.t1.stop1Gvermi1861.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 375076..375078 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1861.t1 ID=Gvermi1861.t1|Name=Gvermi1861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=164bp
MPCSSSSKHLDTHFLCHTTAKLIRVETIFVPTSATVPTKAVQLFSETAVA
PITSVSGLNLRITVTSVAAKTSVPSNFSFATISTVSSICAKPAVATVTTI
PTLAFTVPAIAATSSVTHVTSHSTVAPGPSRLQQRISSISTHTAVSSFTT
ASSIATIPTVSKD*
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spliced messenger RNA

>Gvermi1861.t1 ID=Gvermi1861.t1|Name=Gvermi1861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_1622:374477..375078+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTGTTCATCTTCGTCTAAGCACCTTGATACTCATTTTCTTTGTCA
TACGACAGCGAAGCTCATCCGAGTGGAAACTATTTTCGTCCCCACCAGCG
CCACCGTCCCCACCAAAGCCGTACAGCTCTTCTCCGAAACCGCCGTCGCC
CCCATTACCTCCGTTTCCGGGCTCAATCTGCGCATCACCGTCACCTCCGT
TGCCGCCAAAACCTCCGTCCCCTCCAATTTCTCCTTCGCCACCATTTCCA
CCGTCTCCTCCATTTGCGCCAAACCCGCCGTCGCCACCGTCACCACCATT
CCCACCTTGGCTTTCACCGTTCCCGCCATCGCCGCCACTTCCTCCGTCAC
CCATGTCACCTCCCATTCCACCGTTGCCCCCGGCCCCTCCCGCCTCCAGC
AGCGAATTTCCTCCATCTCCACCCACACCGCCGTCTCCTCCTTCACCACC
GCTTCCTCCATCGCCACCATTCCCACCGTCAGTAAAGATTGA
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protein sequence of Gvermi1861.t1

>Gvermi1861.t1 ID=Gvermi1861.t1|Name=Gvermi1861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=164bp
MPCSSSSKHLDTHFLCHTTAKLIRVETIFVPTSATVPTKAVQLFSETAVA
PITSVSGLNLRITVTSVAAKTSVPSNFSFATISTVSSICAKPAVATVTTI
PTLAFTVPAIAATSSVTHVTSHSTVAPGPSRLQQRISSISTHTAVSSFTT
ASSIATIPTVSKD*
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mRNA from alignment at ScGOVlb_1622:374477..375078+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1861.t1 ID=Gvermi1861.t1|Name=Gvermi1861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=602bp|location=Sequence derived from alignment at ScGOVlb_1622:374477..375078+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTTGTTCATCTTCGTCTAAGCACCTTGATACTCATTTTCTTTGTCA
TACGACAGCGAAGCTCATCCGAGTGGAAACTATTTGTACGACACAGCCCT
TGTGACACACGATTCCTCAAACAGCTCTCACCGAATTTATCAATTCATTG
CACCATCTAATGCGTTACATACATCTCCTCAAAGCTCACGATAAGTCGTC
CCCACCAGCGCCACCGTCCCCACCAAAGCCGTACAGCTCTTCTCCGAAAC
CGCCGTCGCCCCCATTACCTCCGTTTCCGGGCTCAATCTGCGCATCACCG
TCACCTCCGTTGCCGCCAAAACCTCCGTCCCCTCCAATTTCTCCTTCGCC
ACCATTTCCACCGTCTCCTCCATTTGCGCCAAACCCGCCGTCGCCACCGT
CACCACCATTCCCACCTTGGCTTTCACCGTTCCCGCCATCGCCGCCACTT
CCTCCGTCACCCATGTCACCTCCCATTCCACCGTTGCCCCCGGCCCCTCC
CGCCTCCAGCAGCGAATTTCCTCCATCTCCACCCACACCGCCGTCTCCTC
CTTCACCACCGCTTCCTCCATCGCCACCATTCCCACCGTCAGTAAAGATT
GA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:374477..375078+

>Gvermi1861.t1 ID=Gvermi1861.t1|Name=Gvermi1861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=492bp|location=Sequence derived from alignment at ScGOVlb_1622:374477..375078+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTTGTTCATCTTCGTCTAAGCACCTTGATACTCATTTTCTTTGTCA
TACGACAGCGAAGCTCATCCGAGTGGAAACTATTTTCGTCCCCACCAGCG
CCACCGTCCCCACCAAAGCCGTACAGCTCTTCTCCGAAACCGCCGTCGCC
CCCATTACCTCCGTTTCCGGGCTCAATCTGCGCATCACCGTCACCTCCGT
TGCCGCCAAAACCTCCGTCCCCTCCAATTTCTCCTTCGCCACCATTTCCA
CCGTCTCCTCCATTTGCGCCAAACCCGCCGTCGCCACCGTCACCACCATT
CCCACCTTGGCTTTCACCGTTCCCGCCATCGCCGCCACTTCCTCCGTCAC
CCATGTCACCTCCCATTCCACCGTTGCCCCCGGCCCCTCCCGCCTCCAGC
AGCGAATTTCCTCCATCTCCACCCACACCGCCGTCTCCTCCTTCACCACC
GCTTCCTCCATCGCCACCATTCCCACCGTCAGTAAAGATTGA
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