Gvermi1860.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1860.t1
Unique NameGvermi1860.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:364084..364953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog583355.Caka_0059
PFAMsBig_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl2|Bacteria
KEGG koko:K20846
Evalue1.53e-26
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria
EC3.2.1.83
Descriptionxyloglucan:xyloglucosyl transferase activity
COG categoryG
CAZyGH16
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1860Gvermi1860Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 364084..364953 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1860.t1.stop1Gvermi1860.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 364084..364086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1860.t1.CDS1Gvermi1860.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 364084..364953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1860.t1.exon1Gvermi1860.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 364084..364953 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1860.t1.start1Gvermi1860.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 364951..364953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1860.t1Gvermi1860.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 364084..364953 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1860.t1 ID=Gvermi1860.t1|Name=Gvermi1860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=290bp
MTVYKNVPRLSYDPSRTAQDTPLPFYLQQEVPSNMKWVKDWNMSDEFDAH
PVRNWYYNNKWLRYNPFWEGRYPSFFSEQNVYVRDKCLWLQSEERPPNAE
DRRKMGNRLDGNGWKYATSFIRTTQKRCYGYYEIACKFMDCNISCAFWFI
DDRDTEIDVFEYSTSAKGEDMYDHSRVPFCQKFNMNTILYSGANKEHEHP
NPYKINVGRDLSQEIVKVGLLWKPDVLVWYLNDREVRRLPNNDFHRPLYL
QLDSEVFSDWFGDPGQNGPKKLPNAWQVFYVRSYQMARR*
back to top

spliced messenger RNA

>Gvermi1860.t1 ID=Gvermi1860.t1|Name=Gvermi1860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_1622:364084..364953- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGTCTACAAGAATGTTCCCCGTCTTTCGTATGACCCCTCCAGAAC
CGCTCAGGACACCCCCCTTCCATTTTACCTTCAACAGGAAGTACCGTCCA
ACATGAAGTGGGTCAAAGACTGGAACATGTCCGATGAGTTTGATGCCCAT
CCCGTGAGGAATTGGTACTACAACAACAAATGGCTTCGCTACAACCCATT
CTGGGAAGGAAGGTACCCGAGTTTTTTTTCTGAGCAGAATGTGTACGTAC
GTGACAAATGTCTATGGCTTCAATCCGAGGAAAGGCCGCCAAATGCGGAG
GATCGCCGCAAGATGGGGAATCGTCTGGATGGAAATGGATGGAAATATGC
CACGAGCTTTATCCGCACTACCCAGAAGCGTTGCTATGGCTATTATGAAA
TTGCTTGCAAGTTCATGGACTGCAATATCAGCTGCGCCTTCTGGTTTATC
GACGACCGTGACACGGAGATCGATGTGTTTGAGTACTCCACTTCGGCCAA
AGGCGAAGATATGTATGATCACTCTAGGGTGCCCTTTTGTCAAAAATTCA
ATATGAACACAATTCTATACTCTGGAGCTAACAAGGAGCATGAACATCCC
AATCCGTATAAAATAAATGTCGGCCGTGATCTCAGTCAAGAAATAGTCAA
GGTCGGCTTACTTTGGAAACCCGACGTGTTGGTATGGTACTTGAATGACC
GCGAAGTACGACGCCTTCCAAATAATGACTTTCACCGGCCACTCTACTTA
CAGCTAGACTCGGAGGTATTTTCAGATTGGTTCGGAGATCCGGGACAGAA
TGGGCCGAAGAAACTGCCAAATGCATGGCAGGTTTTTTACGTTCGTAGCT
ACCAAATGGCACGCAGGTAG
back to top

protein sequence of Gvermi1860.t1

>Gvermi1860.t1 ID=Gvermi1860.t1|Name=Gvermi1860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=290bp
MTVYKNVPRLSYDPSRTAQDTPLPFYLQQEVPSNMKWVKDWNMSDEFDAH
PVRNWYYNNKWLRYNPFWEGRYPSFFSEQNVYVRDKCLWLQSEERPPNAE
DRRKMGNRLDGNGWKYATSFIRTTQKRCYGYYEIACKFMDCNISCAFWFI
DDRDTEIDVFEYSTSAKGEDMYDHSRVPFCQKFNMNTILYSGANKEHEHP
NPYKINVGRDLSQEIVKVGLLWKPDVLVWYLNDREVRRLPNNDFHRPLYL
QLDSEVFSDWFGDPGQNGPKKLPNAWQVFYVRSYQMARR*
back to top

mRNA from alignment at ScGOVlb_1622:364084..364953-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1860.t1 ID=Gvermi1860.t1|Name=Gvermi1860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_1622:364084..364953- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGTCTACAAGAATGTTCCCCGTCTTTCGTATGACCCCTCCAGAAC
CGCTCAGGACACCCCCCTTCCATTTTACCTTCAACAGGAAGTACCGTCCA
ACATGAAGTGGGTCAAAGACTGGAACATGTCCGATGAGTTTGATGCCCAT
CCCGTGAGGAATTGGTACTACAACAACAAATGGCTTCGCTACAACCCATT
CTGGGAAGGAAGGTACCCGAGTTTTTTTTCTGAGCAGAATGTGTACGTAC
GTGACAAATGTCTATGGCTTCAATCCGAGGAAAGGCCGCCAAATGCGGAG
GATCGCCGCAAGATGGGGAATCGTCTGGATGGAAATGGATGGAAATATGC
CACGAGCTTTATCCGCACTACCCAGAAGCGTTGCTATGGCTATTATGAAA
TTGCTTGCAAGTTCATGGACTGCAATATCAGCTGCGCCTTCTGGTTTATC
GACGACCGTGACACGGAGATCGATGTGTTTGAGTACTCCACTTCGGCCAA
AGGCGAAGATATGTATGATCACTCTAGGGTGCCCTTTTGTCAAAAATTCA
ATATGAACACAATTCTATACTCTGGAGCTAACAAGGAGCATGAACATCCC
AATCCGTATAAAATAAATGTCGGCCGTGATCTCAGTCAAGAAATAGTCAA
GGTCGGCTTACTTTGGAAACCCGACGTGTTGGTATGGTACTTGAATGACC
GCGAAGTACGACGCCTTCCAAATAATGACTTTCACCGGCCACTCTACTTA
CAGCTAGACTCGGAGGTATTTTCAGATTGGTTCGGAGATCCGGGACAGAA
TGGGCCGAAGAAACTGCCAAATGCATGGCAGGTTTTTTACGTTCGTAGCT
ACCAAATGGCACGCAGGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_1622:364084..364953-

>Gvermi1860.t1 ID=Gvermi1860.t1|Name=Gvermi1860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=870bp|location=Sequence derived from alignment at ScGOVlb_1622:364084..364953- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGTCTACAAGAATGTTCCCCGTCTTTCGTATGACCCCTCCAGAAC
CGCTCAGGACACCCCCCTTCCATTTTACCTTCAACAGGAAGTACCGTCCA
ACATGAAGTGGGTCAAAGACTGGAACATGTCCGATGAGTTTGATGCCCAT
CCCGTGAGGAATTGGTACTACAACAACAAATGGCTTCGCTACAACCCATT
CTGGGAAGGAAGGTACCCGAGTTTTTTTTCTGAGCAGAATGTGTACGTAC
GTGACAAATGTCTATGGCTTCAATCCGAGGAAAGGCCGCCAAATGCGGAG
GATCGCCGCAAGATGGGGAATCGTCTGGATGGAAATGGATGGAAATATGC
CACGAGCTTTATCCGCACTACCCAGAAGCGTTGCTATGGCTATTATGAAA
TTGCTTGCAAGTTCATGGACTGCAATATCAGCTGCGCCTTCTGGTTTATC
GACGACCGTGACACGGAGATCGATGTGTTTGAGTACTCCACTTCGGCCAA
AGGCGAAGATATGTATGATCACTCTAGGGTGCCCTTTTGTCAAAAATTCA
ATATGAACACAATTCTATACTCTGGAGCTAACAAGGAGCATGAACATCCC
AATCCGTATAAAATAAATGTCGGCCGTGATCTCAGTCAAGAAATAGTCAA
GGTCGGCTTACTTTGGAAACCCGACGTGTTGGTATGGTACTTGAATGACC
GCGAAGTACGACGCCTTCCAAATAATGACTTTCACCGGCCACTCTACTTA
CAGCTAGACTCGGAGGTATTTTCAGATTGGTTCGGAGATCCGGGACAGAA
TGGGCCGAAGAAACTGCCAAATGCATGGCAGGTTTTTTACGTTCGTAGCT
ACCAAATGGCACGCAGGTAG
back to top