Gvermi1858.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1858.t1
Unique NameGvermi1858.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:283302..286228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1858Gvermi1858Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 283302..286228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1858.t1Gvermi1858.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 283302..286228 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1858.t1.stop1Gvermi1858.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 283302..283304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1858.t1.CDS1Gvermi1858.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 283302..283527 -
Gvermi1858.t1.CDS2Gvermi1858.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 285879..286228 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1858.t1.exon1Gvermi1858.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 283302..283527 -
Gvermi1858.t1.exon2Gvermi1858.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 285879..286228 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1858.t1.intron1Gvermi1858.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 283528..285878 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1858.t1.start1Gvermi1858.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 286226..286228 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1858.t1 ID=Gvermi1858.t1|Name=Gvermi1858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=192bp
MTTPKVFMTVFALSLLTIVASSAVPGLPENVMDLPIVDIQESTLVVPLVR
QQQEEAVFAVNSSSAGFARTSQAGLTVQRGTSGVLTFSFSINAIEAETLA
TLDQQFSSSLTVSETEESGCMLQTDAETKVNVLRMLSRGNDGEHKECAHE
KRGADPSTVNQSFLEQAEGTIIFGRLYACQESLQAQFAIYN*
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spliced messenger RNA

>Gvermi1858.t1 ID=Gvermi1858.t1|Name=Gvermi1858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_1622:283302..286228- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACTCCCAAGGTTTTCATGACGGTTTTTGCGCTCTCGCTTCTGAC
AATCGTGGCCTCTTCAGCTGTTCCAGGACTTCCGGAAAATGTCATGGATC
TACCGATCGTCGATATCCAGGAGTCCACCCTTGTTGTTCCTCTTGTTCGC
CAGCAGCAGGAGGAAGCCGTATTTGCGGTCAATAGCTCAAGTGCTGGATT
CGCCCGTACTTCTCAGGCCGGGCTCACCGTGCAACGCGGAACTAGTGGTG
TGCTCACCTTTTCGTTCAGTATCAATGCCATCGAGGCCGAGACATTGGCT
ACTCTCGACCAACAATTTTCTAGCTCTCTCACTGTTTCCGAGACGGAGGA
GTCTGGGTGCATGCTTCAGACGGATGCTGAAACGAAGGTGAATGTCCTAC
GAATGCTTTCTCGTGGAAATGATGGTGAACACAAAGAATGTGCACACGAG
AAACGTGGCGCAGACCCTTCTACGGTGAATCAATCATTTCTGGAGCAGGC
CGAAGGCACCATCATCTTTGGGCGACTTTACGCGTGTCAGGAAAGTTTGC
AAGCACAATTCGCTATTTATAATTAA
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protein sequence of Gvermi1858.t1

>Gvermi1858.t1 ID=Gvermi1858.t1|Name=Gvermi1858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=192bp
MTTPKVFMTVFALSLLTIVASSAVPGLPENVMDLPIVDIQESTLVVPLVR
QQQEEAVFAVNSSSAGFARTSQAGLTVQRGTSGVLTFSFSINAIEAETLA
TLDQQFSSSLTVSETEESGCMLQTDAETKVNVLRMLSRGNDGEHKECAHE
KRGADPSTVNQSFLEQAEGTIIFGRLYACQESLQAQFAIYN*
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mRNA from alignment at ScGOVlb_1622:283302..286228-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1858.t1 ID=Gvermi1858.t1|Name=Gvermi1858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2927bp|location=Sequence derived from alignment at ScGOVlb_1622:283302..286228- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTCCCAAGGTTTTCATGACGGTTTTTGCGCTCTCGCTTCTGAC
AATCGTGGCCTCTTCAGCTGTTCCAGGACTTCCGGAAAATGTCATGGATC
TACCGATCGTCGATATCCAGGAGTCCACCCTTGTTGTTCCTCTTGTTCGC
CAGCAGCAGGAGGAAGCCGTATTTGCGGTCAATAGCTCAAGTGCTGGATT
CGCCCGTACTTCTCAGGCCGGGCTCACCGTGCAACGCGGAACTAGTGGTG
TGCTCACCTTTTCGTTCAGTATCAATGCCATCGAGGCCGAGACATTGGCT
ACTCTCGACCAACAATTTTCTAGCTCTCTCACTGTTTCCGAGACGGAGGA
GTACAGTCGCCTCCGTTCAGACTACCAGAGCGGCTTTGGAGTCCCGTTTT
TGAGGTGGCTCGGGATCAACCTCAACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTTTTCATTAAATTCTTT
AATGCTTTTCTTTCTGTGCAGCGCATCTCACTGTGTATGTTTAAATATCA
ATGCTCGAGCTTTTGTGGTACCCTGGCAACCGTCAAGTTTGCATTTGTAC
GTGTACTATTCTGTCCCTGTTTCTATTTGGGTCGATCCAGTCTCCATTAA
TTTATCGATGACCAAGTTCTCCCTTTCATCGACTTTAGTCCCAAAAATAA
AACCTGTTTACTCAGTATTACCTCCCATCTTTTTAACTCACATGGACAGT
CAGCGAGATGAATATGAACGTAACATTTTGGGCGGTGCTTTTTTATACGT
TGTAATTCTTTAGTACGTCGTGTTTAGTTTGCAAATGCAACACACAAGGT
GGTGAGTCATACTAGTCTATGATAGACCAAATTATTAAAAACAATCCACA
TGTGGGTGAGGTGTTTTGTCGGCCGTGATTGTCACGTCAGGTCATTGATC
ACTGTTTCGGATCGAAAAATCAAGAGAAAAGTATCATTTCGGCATCCACT
TCAGCTTGTTTTTGTTTGGCACTACATAAAATTCACTCTTTTTTTAATGA
CAGACTACAATGTTTTGATTTTCGTTTATTGAGAACGCTTTATTTCATAT
TCATGCCAAATAAATGCGCATAAGTTCTTCAAATGGTGAAGACGCGTTTC
CAGATATCAGAACAAAAACACTAGCACAAATGCAAATGAAATCCTGAAAG
ATAAAATTATACATAAATGTGGATGTATAGGACAAAATCCAGCATTTTAA
ACTACCACAACGCAAATATGCAAATTACTCTGCACTGTCTGCGTTCAAAG
AATATTTTTCAAAAACAACTTTTTAACTCTGATCCAAGCATTTGTTTATG
TGTAGATTGGTTATTATTCTGAACAATTTTATGCTTTGCCATATTCTTCA
CTATGCTTATTCTTATGGGGATTCTTTTCAGTGTAATATGCACCCTCTTG
GATACTTCCTGGATGCCACAAAACATATGCATTAGTCAGGGCCACATAAT
GTAAAACATAAACGTCAAAATTACGTTCACTTATTATTTTGAACAGTTCT
GCCGGCCTGTTGCACAAAAAATTCTCATTTAAATACTTTGAATTGATTTT
ATTCGTTCACAGGTTTTCCGAACGGCTTCAAAATTTTCAGAAAGGGTTTT
GCTGCGTTTTACATAAAGTAAATACTTATTTTCTTCTTTATGATATCCTT
TCATTAAAACAATACTTTGAAGATGTATCCACAAATTCTTCAAGTTCCAA
AATAAAGCTCAAAACATCATTTTGAGTCTTTAAATAGTTGTTTCATGCAC
ATTGCTACTTAAATGGAAAGTATCAATATCTGCATGTGATCCTGGAAAAT
GTTGTAACAGTCTTCAGTATTTTTAACATATTAAACCTACACTACAGTTG
TCACACCATAAACATCGTGTGTTACACCTCAATTTGTGTTAGTTTTTGCA
ATATCGATATTTTTTTCAGAACTATGTTTTGAAAGTTACTTTCTTTGTAC
TCCGACAATCTGGAAAATCATTGGAGACAAAGTATTTTCTTTCAAAATTT
TGGGTCGCCTATTCCCATTTGTAGAAGGAACCGAATTGTTGTGCAGTAGA
AATGATATTCGAAAACTTCAAAACCAATTTTACAGAACTATACGCTATGA
AGATTCAAATAGTTTTGAAACACTCCAATGTATCACCTGCAAAGGTGCTT
CCTTGGCAGATGCTTGCATGAAAAGAATAATCGGAGGGACTCATTTTCCG
TGAGAGAGACTTCCGCAAAGCTTATGCGGTTATAAGGATGTAGAATGAGT
CTCTGCAATGTGGTCAGATCATTGCGTTTTGGGCGGATATACATCATTGC
TCGTGAGTTAAAGATGGAGAAACATCATGCAAGGAAGACCTTTTTTTGGA
ATTTTATTTATTAATTTGGTCTACTTAATCATTTTAGTTTTTCTATTGCA
GCTGTTCCGATTGCCTGCTGTTCATGCAGAATTGCTCAGCCAATATTTGG
AAAGTAAAAAAAGACAAAGTACGGGCTATGACCTTGACCGTTATTGCGCA
GACTGACATCTTGGAGAGCGTCGCCATTCATGTCGGGCTGATTATCTGGC
TGGCGTCCCTGTCCCACACTGTTGCATGTATTCTTGTCTTGTGTTCAATA
GGTCTGGGTGCATGCTTCAGACGGATGCTGAAACGAAGGTGAATGTCCTA
CGAATGCTTTCTCGTGGAAATGATGGTGAACACAAAGAATGTGCACACGA
GAAACGTGGCGCAGACCCTTCTACGGTGAATCAATCATTTCTGGAGCAGG
CCGAAGGCACCATCATCTTTGGGCGACTTTACGCGTGTCAGGAAAGTTTG
CAAGCACAATTCGCTATTTATAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:283302..286228-

>Gvermi1858.t1 ID=Gvermi1858.t1|Name=Gvermi1858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=576bp|location=Sequence derived from alignment at ScGOVlb_1622:283302..286228- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTCCCAAGGTTTTCATGACGGTTTTTGCGCTCTCGCTTCTGAC
AATCGTGGCCTCTTCAGCTGTTCCAGGACTTCCGGAAAATGTCATGGATC
TACCGATCGTCGATATCCAGGAGTCCACCCTTGTTGTTCCTCTTGTTCGC
CAGCAGCAGGAGGAAGCCGTATTTGCGGTCAATAGCTCAAGTGCTGGATT
CGCCCGTACTTCTCAGGCCGGGCTCACCGTGCAACGCGGAACTAGTGGTG
TGCTCACCTTTTCGTTCAGTATCAATGCCATCGAGGCCGAGACATTGGCT
ACTCTCGACCAACAATTTTCTAGCTCTCTCACTGTTTCCGAGACGGAGGA
GTCTGGGTGCATGCTTCAGACGGATGCTGAAACGAAGGTGAATGTCCTAC
GAATGCTTTCTCGTGGAAATGATGGTGAACACAAAGAATGTGCACACGAG
AAACGTGGCGCAGACCCTTCTACGGTGAATCAATCATTTCTGGAGCAGGC
CGAAGGCACCATCATCTTTGGGCGACTTTACGCGTGTCAGGAAAGTTTGC
AAGCACAATTCGCTATTTATAATTAA
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