Gvermi1855.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1855.t1
Unique NameGvermi1855.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:234364..235653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27679.XP_003931949.1
Preferred nameTMPRSS11E
PFAMsSEA,Trypsin
Max annot lvl33208|Metazoa
KEGG koko:K09642
GOsGO:0003008,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0031224,GO:0031226,GO:0032501,GO:0043170,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050877,GO:0050890,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564
Evalue8.68e-11
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,38EW9@33154|Opisthokonta,3BKQ4@33208|Metazoa,3CS8W@33213|Bilateria,481S2@7711|Chordata,48Z3T@7742|Vertebrata,3JD66@40674|Mammalia,35FEG@314146|Euarchontoglires,4MEM6@9443|Primates
DescriptionSEA domain
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1855Gvermi1855Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 234364..235653 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1855.t1.stop1Gvermi1855.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 234364..234366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1855.t1.CDS1Gvermi1855.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 234364..235653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1855.t1.exon1Gvermi1855.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 234364..235653 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1855.t1.start1Gvermi1855.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 235651..235653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1855.t1Gvermi1855.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 234364..235653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1855.t1 ID=Gvermi1855.t1|Name=Gvermi1855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=430bp
MLFTDLFFLAMSASFVFTQQAVSSIILPTPCESSRSVTVGDRTRLTDLRF
QASVKAPPTILEDSSTNYSTSCSATRISKYWLLSAAHCGVTTRWVALLHA
PTIENRTLATLQRVYYHPRYRGESGSPNFAFDIALIRFRPPDSERSDVST
VRPNDSGRLPFQFPSVRKTVYDALFYHEQDDQIAIFGDSRLADIPKSPLT
TCSIKISERSSLNERLLNNGTNLCIRHLYNRCSACLGDSGRPVLQYDELG
DALQVGVLLCGEHCLQPSRPAVAERVAPMLWWFGSVRAALENGVPAQSFR
QDGSEASDETADEMIRVGTPAVAETTPVGMVETPLIDDPVNGKGNGSIQG
AGNGSEETKPLKGQEWDEITGNETSAGETSPGTIFGSAGVSRETSGGWLR
RVSIIGGCVIAVCSLAYTVFRCWKENSSY*
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spliced messenger RNA

>Gvermi1855.t1 ID=Gvermi1855.t1|Name=Gvermi1855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_1622:234364..235653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTCACAGACCTATTCTTCCTCGCAATGTCCGCGAGCTTTGTTTT
CACTCAACAAGCTGTCAGTTCAATCATTCTGCCGACGCCTTGTGAAAGCT
CGCGGAGTGTTACAGTCGGAGACCGCACTCGCCTCACCGACCTTCGCTTT
CAGGCCTCTGTGAAGGCTCCCCCAACCATCCTCGAAGACTCTTCCACAAA
CTACTCTACCTCCTGCAGCGCTACTCGGATATCAAAGTATTGGTTGCTCT
CGGCGGCCCACTGCGGCGTCACCACACGCTGGGTTGCTCTTCTTCATGCC
CCCACGATTGAAAACAGAACCTTGGCTACATTGCAACGCGTGTACTATCA
CCCTCGTTACCGGGGAGAATCTGGATCACCCAACTTTGCGTTCGATATAG
CTTTGATTCGTTTCCGACCCCCAGACAGCGAACGAAGCGATGTTTCGACT
GTGCGACCTAACGATAGTGGACGTCTACCTTTCCAATTTCCTTCTGTCCG
CAAAACTGTTTATGATGCATTGTTCTACCACGAGCAAGATGATCAAATTG
CCATTTTTGGTGACTCTCGCCTCGCAGATATACCCAAGTCTCCGCTCACA
ACATGCAGCATCAAAATCTCAGAGCGCTCTTCATTGAATGAAAGGCTCTT
AAACAACGGCACCAACCTCTGCATACGACATCTCTATAACCGATGCAGCG
CGTGCTTGGGAGACTCTGGCAGGCCGGTGCTGCAGTATGATGAGCTTGGG
GATGCGCTGCAGGTGGGTGTCCTACTCTGCGGAGAGCACTGTTTGCAGCC
TAGTAGGCCTGCAGTGGCGGAGCGCGTCGCGCCCATGCTCTGGTGGTTTG
GAAGCGTGAGGGCAGCGTTAGAGAATGGCGTGCCGGCTCAAAGCTTTCGA
CAGGACGGTAGCGAGGCTTCTGATGAGACAGCTGATGAAATGATTCGTGT
GGGCACTCCCGCAGTGGCGGAAACGACTCCCGTGGGAATGGTTGAAACCC
CTCTGATAGATGATCCCGTGAACGGAAAAGGGAATGGGAGCATACAGGGT
GCTGGGAACGGCAGTGAGGAGACAAAGCCATTGAAAGGACAAGAATGGGA
CGAGATAACCGGCAACGAAACGAGCGCTGGCGAAACTAGTCCGGGCACCA
TCTTTGGATCTGCCGGTGTTTCCAGAGAGACATCTGGTGGATGGCTACGT
CGCGTGAGCATCATCGGAGGTTGCGTTATCGCGGTTTGTTCGCTTGCGTA
CACTGTATTTCGATGTTGGAAGGAGAATTCGTCATATTAA
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protein sequence of Gvermi1855.t1

>Gvermi1855.t1 ID=Gvermi1855.t1|Name=Gvermi1855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=430bp
MLFTDLFFLAMSASFVFTQQAVSSIILPTPCESSRSVTVGDRTRLTDLRF
QASVKAPPTILEDSSTNYSTSCSATRISKYWLLSAAHCGVTTRWVALLHA
PTIENRTLATLQRVYYHPRYRGESGSPNFAFDIALIRFRPPDSERSDVST
VRPNDSGRLPFQFPSVRKTVYDALFYHEQDDQIAIFGDSRLADIPKSPLT
TCSIKISERSSLNERLLNNGTNLCIRHLYNRCSACLGDSGRPVLQYDELG
DALQVGVLLCGEHCLQPSRPAVAERVAPMLWWFGSVRAALENGVPAQSFR
QDGSEASDETADEMIRVGTPAVAETTPVGMVETPLIDDPVNGKGNGSIQG
AGNGSEETKPLKGQEWDEITGNETSAGETSPGTIFGSAGVSRETSGGWLR
RVSIIGGCVIAVCSLAYTVFRCWKENSSY*
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mRNA from alignment at ScGOVlb_1622:234364..235653-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1855.t1 ID=Gvermi1855.t1|Name=Gvermi1855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_1622:234364..235653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGTTCACAGACCTATTCTTCCTCGCAATGTCCGCGAGCTTTGTTTT
CACTCAACAAGCTGTCAGTTCAATCATTCTGCCGACGCCTTGTGAAAGCT
CGCGGAGTGTTACAGTCGGAGACCGCACTCGCCTCACCGACCTTCGCTTT
CAGGCCTCTGTGAAGGCTCCCCCAACCATCCTCGAAGACTCTTCCACAAA
CTACTCTACCTCCTGCAGCGCTACTCGGATATCAAAGTATTGGTTGCTCT
CGGCGGCCCACTGCGGCGTCACCACACGCTGGGTTGCTCTTCTTCATGCC
CCCACGATTGAAAACAGAACCTTGGCTACATTGCAACGCGTGTACTATCA
CCCTCGTTACCGGGGAGAATCTGGATCACCCAACTTTGCGTTCGATATAG
CTTTGATTCGTTTCCGACCCCCAGACAGCGAACGAAGCGATGTTTCGACT
GTGCGACCTAACGATAGTGGACGTCTACCTTTCCAATTTCCTTCTGTCCG
CAAAACTGTTTATGATGCATTGTTCTACCACGAGCAAGATGATCAAATTG
CCATTTTTGGTGACTCTCGCCTCGCAGATATACCCAAGTCTCCGCTCACA
ACATGCAGCATCAAAATCTCAGAGCGCTCTTCATTGAATGAAAGGCTCTT
AAACAACGGCACCAACCTCTGCATACGACATCTCTATAACCGATGCAGCG
CGTGCTTGGGAGACTCTGGCAGGCCGGTGCTGCAGTATGATGAGCTTGGG
GATGCGCTGCAGGTGGGTGTCCTACTCTGCGGAGAGCACTGTTTGCAGCC
TAGTAGGCCTGCAGTGGCGGAGCGCGTCGCGCCCATGCTCTGGTGGTTTG
GAAGCGTGAGGGCAGCGTTAGAGAATGGCGTGCCGGCTCAAAGCTTTCGA
CAGGACGGTAGCGAGGCTTCTGATGAGACAGCTGATGAAATGATTCGTGT
GGGCACTCCCGCAGTGGCGGAAACGACTCCCGTGGGAATGGTTGAAACCC
CTCTGATAGATGATCCCGTGAACGGAAAAGGGAATGGGAGCATACAGGGT
GCTGGGAACGGCAGTGAGGAGACAAAGCCATTGAAAGGACAAGAATGGGA
CGAGATAACCGGCAACGAAACGAGCGCTGGCGAAACTAGTCCGGGCACCA
TCTTTGGATCTGCCGGTGTTTCCAGAGAGACATCTGGTGGATGGCTACGT
CGCGTGAGCATCATCGGAGGTTGCGTTATCGCGGTTTGTTCGCTTGCGTA
CACTGTATTTCGATGTTGGAAGGAGAATTCGTCATATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:234364..235653-

>Gvermi1855.t1 ID=Gvermi1855.t1|Name=Gvermi1855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1290bp|location=Sequence derived from alignment at ScGOVlb_1622:234364..235653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGTTCACAGACCTATTCTTCCTCGCAATGTCCGCGAGCTTTGTTTT
CACTCAACAAGCTGTCAGTTCAATCATTCTGCCGACGCCTTGTGAAAGCT
CGCGGAGTGTTACAGTCGGAGACCGCACTCGCCTCACCGACCTTCGCTTT
CAGGCCTCTGTGAAGGCTCCCCCAACCATCCTCGAAGACTCTTCCACAAA
CTACTCTACCTCCTGCAGCGCTACTCGGATATCAAAGTATTGGTTGCTCT
CGGCGGCCCACTGCGGCGTCACCACACGCTGGGTTGCTCTTCTTCATGCC
CCCACGATTGAAAACAGAACCTTGGCTACATTGCAACGCGTGTACTATCA
CCCTCGTTACCGGGGAGAATCTGGATCACCCAACTTTGCGTTCGATATAG
CTTTGATTCGTTTCCGACCCCCAGACAGCGAACGAAGCGATGTTTCGACT
GTGCGACCTAACGATAGTGGACGTCTACCTTTCCAATTTCCTTCTGTCCG
CAAAACTGTTTATGATGCATTGTTCTACCACGAGCAAGATGATCAAATTG
CCATTTTTGGTGACTCTCGCCTCGCAGATATACCCAAGTCTCCGCTCACA
ACATGCAGCATCAAAATCTCAGAGCGCTCTTCATTGAATGAAAGGCTCTT
AAACAACGGCACCAACCTCTGCATACGACATCTCTATAACCGATGCAGCG
CGTGCTTGGGAGACTCTGGCAGGCCGGTGCTGCAGTATGATGAGCTTGGG
GATGCGCTGCAGGTGGGTGTCCTACTCTGCGGAGAGCACTGTTTGCAGCC
TAGTAGGCCTGCAGTGGCGGAGCGCGTCGCGCCCATGCTCTGGTGGTTTG
GAAGCGTGAGGGCAGCGTTAGAGAATGGCGTGCCGGCTCAAAGCTTTCGA
CAGGACGGTAGCGAGGCTTCTGATGAGACAGCTGATGAAATGATTCGTGT
GGGCACTCCCGCAGTGGCGGAAACGACTCCCGTGGGAATGGTTGAAACCC
CTCTGATAGATGATCCCGTGAACGGAAAAGGGAATGGGAGCATACAGGGT
GCTGGGAACGGCAGTGAGGAGACAAAGCCATTGAAAGGACAAGAATGGGA
CGAGATAACCGGCAACGAAACGAGCGCTGGCGAAACTAGTCCGGGCACCA
TCTTTGGATCTGCCGGTGTTTCCAGAGAGACATCTGGTGGATGGCTACGT
CGCGTGAGCATCATCGGAGGTTGCGTTATCGCGGTTTGTTCGCTTGCGTA
CACTGTATTTCGATGTTGGAAGGAGAATTCGTCATATTAA
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