Gvermi1852.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1852.t1
Unique NameGvermi1852.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:227383..228651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1852Gvermi1852Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 227383..228651 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1852.t1.stop1Gvermi1852.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 227383..227385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1852.t1.CDS1Gvermi1852.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 227383..228651 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1852.t1.exon1Gvermi1852.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 227383..228651 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1852.t1.start1Gvermi1852.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 228649..228651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1852.t1Gvermi1852.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 227383..228651 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1852.t1 ID=Gvermi1852.t1|Name=Gvermi1852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MISLLIFLGVLAISVEVRAQAPTCRDRGLFSHVRCESLWPNEECTAAAQF
GCLVSGCDCVLNQTIADSNPCPNNERPIDALSLSSPRSSVNFRMGVNLLD
NRLNVLLLIDASPSMAAQFPTVLPELSALAHELIVNLSAIVAVAVYGGEQ
SFDTFDAFQTLQSFTSNASAIQSALRTIPTLTLQNGPRLLLRAIEDSRSA
NIGWTGFNARRIIIVVGDTPGREPACATSDFQKVLNRSTLFDFLDLGFTK
FSFIAASVGQPGLDAALPQLPQCPFRPLCLLVFCQRSEPALGVAVAPGQL
STLASRANGSFISNFSKTAVYEAVLDILQQPKFQPIDGLLFRDTEDAITP
VSMDTCGNRVVVERPSLPKVLPALSFLTIDFTVSLADRACDDGPFDCTLT
IAESRNSTFVFELEMLSVKACF*
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spliced messenger RNA

>Gvermi1852.t1 ID=Gvermi1852.t1|Name=Gvermi1852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1622:227383..228651- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCGCTTCTCATCTTTCTCGGCGTTCTCGCCATATCCGTTGAGGT
TCGAGCCCAGGCACCCACATGCCGAGATCGCGGTCTGTTCTCCCATGTGC
GCTGCGAGTCCCTCTGGCCAAATGAAGAATGCACAGCCGCGGCCCAGTTT
GGCTGCCTTGTCTCGGGGTGCGATTGTGTACTCAACCAAACCATCGCTGA
TTCCAATCCATGTCCCAACAATGAACGTCCCATTGACGCGCTCAGTCTCT
CCTCCCCGCGCTCGTCCGTCAACTTCCGAATGGGCGTCAACCTGCTCGAT
AATCGCCTCAACGTCCTTCTTCTGATCGACGCGTCGCCGTCCATGGCTGC
GCAGTTTCCCACAGTGCTTCCCGAACTCTCCGCTTTGGCGCATGAGTTGA
TCGTCAATTTATCTGCAATCGTGGCCGTTGCCGTGTACGGCGGCGAACAG
TCGTTCGACACATTTGACGCCTTCCAAACGCTACAATCTTTCACGTCAAA
CGCCAGTGCCATTCAAAGTGCGCTTCGGACTATTCCCACGTTGACGCTCC
AAAATGGTCCCCGTTTGTTGCTACGAGCTATTGAAGACTCGCGCAGTGCA
AACATAGGCTGGACTGGCTTCAATGCCAGACGCATCATCATTGTTGTTGG
AGATACACCCGGTCGAGAGCCGGCTTGCGCTACATCCGATTTTCAAAAGG
TTCTGAACCGCAGCACTCTTTTCGACTTTCTCGATCTCGGTTTCACCAAA
TTCTCTTTCATTGCTGCGTCGGTGGGACAGCCGGGATTGGATGCCGCTCT
GCCACAATTACCTCAATGCCCTTTCAGACCTTTGTGCTTACTTGTGTTCT
GTCAACGTTCAGAGCCGGCATTGGGTGTCGCAGTTGCCCCCGGACAGTTG
TCCACATTAGCCTCGCGGGCGAACGGTTCCTTCATATCGAACTTTAGCAA
AACAGCTGTCTACGAAGCAGTGTTGGATATTCTCCAGCAACCAAAATTTC
AACCCATCGACGGCCTTTTGTTCCGGGACACTGAAGATGCGATCACACCG
GTGAGCATGGATACGTGTGGAAACAGAGTTGTTGTTGAACGACCAAGTCT
TCCGAAGGTTCTCCCTGCGTTATCGTTTTTGACAATTGACTTCACGGTCT
CACTTGCTGACAGAGCTTGCGATGATGGACCATTTGATTGTACTTTGACC
ATCGCAGAATCAAGGAATTCTACTTTTGTGTTTGAGCTAGAAATGCTTTC
TGTGAAAGCGTGCTTTTAG
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protein sequence of Gvermi1852.t1

>Gvermi1852.t1 ID=Gvermi1852.t1|Name=Gvermi1852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MISLLIFLGVLAISVEVRAQAPTCRDRGLFSHVRCESLWPNEECTAAAQF
GCLVSGCDCVLNQTIADSNPCPNNERPIDALSLSSPRSSVNFRMGVNLLD
NRLNVLLLIDASPSMAAQFPTVLPELSALAHELIVNLSAIVAVAVYGGEQ
SFDTFDAFQTLQSFTSNASAIQSALRTIPTLTLQNGPRLLLRAIEDSRSA
NIGWTGFNARRIIIVVGDTPGREPACATSDFQKVLNRSTLFDFLDLGFTK
FSFIAASVGQPGLDAALPQLPQCPFRPLCLLVFCQRSEPALGVAVAPGQL
STLASRANGSFISNFSKTAVYEAVLDILQQPKFQPIDGLLFRDTEDAITP
VSMDTCGNRVVVERPSLPKVLPALSFLTIDFTVSLADRACDDGPFDCTLT
IAESRNSTFVFELEMLSVKACF*
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mRNA from alignment at ScGOVlb_1622:227383..228651-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1852.t1 ID=Gvermi1852.t1|Name=Gvermi1852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1622:227383..228651- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTTCGCTTCTCATCTTTCTCGGCGTTCTCGCCATATCCGTTGAGGT
TCGAGCCCAGGCACCCACATGCCGAGATCGCGGTCTGTTCTCCCATGTGC
GCTGCGAGTCCCTCTGGCCAAATGAAGAATGCACAGCCGCGGCCCAGTTT
GGCTGCCTTGTCTCGGGGTGCGATTGTGTACTCAACCAAACCATCGCTGA
TTCCAATCCATGTCCCAACAATGAACGTCCCATTGACGCGCTCAGTCTCT
CCTCCCCGCGCTCGTCCGTCAACTTCCGAATGGGCGTCAACCTGCTCGAT
AATCGCCTCAACGTCCTTCTTCTGATCGACGCGTCGCCGTCCATGGCTGC
GCAGTTTCCCACAGTGCTTCCCGAACTCTCCGCTTTGGCGCATGAGTTGA
TCGTCAATTTATCTGCAATCGTGGCCGTTGCCGTGTACGGCGGCGAACAG
TCGTTCGACACATTTGACGCCTTCCAAACGCTACAATCTTTCACGTCAAA
CGCCAGTGCCATTCAAAGTGCGCTTCGGACTATTCCCACGTTGACGCTCC
AAAATGGTCCCCGTTTGTTGCTACGAGCTATTGAAGACTCGCGCAGTGCA
AACATAGGCTGGACTGGCTTCAATGCCAGACGCATCATCATTGTTGTTGG
AGATACACCCGGTCGAGAGCCGGCTTGCGCTACATCCGATTTTCAAAAGG
TTCTGAACCGCAGCACTCTTTTCGACTTTCTCGATCTCGGTTTCACCAAA
TTCTCTTTCATTGCTGCGTCGGTGGGACAGCCGGGATTGGATGCCGCTCT
GCCACAATTACCTCAATGCCCTTTCAGACCTTTGTGCTTACTTGTGTTCT
GTCAACGTTCAGAGCCGGCATTGGGTGTCGCAGTTGCCCCCGGACAGTTG
TCCACATTAGCCTCGCGGGCGAACGGTTCCTTCATATCGAACTTTAGCAA
AACAGCTGTCTACGAAGCAGTGTTGGATATTCTCCAGCAACCAAAATTTC
AACCCATCGACGGCCTTTTGTTCCGGGACACTGAAGATGCGATCACACCG
GTGAGCATGGATACGTGTGGAAACAGAGTTGTTGTTGAACGACCAAGTCT
TCCGAAGGTTCTCCCTGCGTTATCGTTTTTGACAATTGACTTCACGGTCT
CACTTGCTGACAGAGCTTGCGATGATGGACCATTTGATTGTACTTTGACC
ATCGCAGAATCAAGGAATTCTACTTTTGTGTTTGAGCTAGAAATGCTTTC
TGTGAAAGCGTGCTTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:227383..228651-

>Gvermi1852.t1 ID=Gvermi1852.t1|Name=Gvermi1852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_1622:227383..228651- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTTCGCTTCTCATCTTTCTCGGCGTTCTCGCCATATCCGTTGAGGT
TCGAGCCCAGGCACCCACATGCCGAGATCGCGGTCTGTTCTCCCATGTGC
GCTGCGAGTCCCTCTGGCCAAATGAAGAATGCACAGCCGCGGCCCAGTTT
GGCTGCCTTGTCTCGGGGTGCGATTGTGTACTCAACCAAACCATCGCTGA
TTCCAATCCATGTCCCAACAATGAACGTCCCATTGACGCGCTCAGTCTCT
CCTCCCCGCGCTCGTCCGTCAACTTCCGAATGGGCGTCAACCTGCTCGAT
AATCGCCTCAACGTCCTTCTTCTGATCGACGCGTCGCCGTCCATGGCTGC
GCAGTTTCCCACAGTGCTTCCCGAACTCTCCGCTTTGGCGCATGAGTTGA
TCGTCAATTTATCTGCAATCGTGGCCGTTGCCGTGTACGGCGGCGAACAG
TCGTTCGACACATTTGACGCCTTCCAAACGCTACAATCTTTCACGTCAAA
CGCCAGTGCCATTCAAAGTGCGCTTCGGACTATTCCCACGTTGACGCTCC
AAAATGGTCCCCGTTTGTTGCTACGAGCTATTGAAGACTCGCGCAGTGCA
AACATAGGCTGGACTGGCTTCAATGCCAGACGCATCATCATTGTTGTTGG
AGATACACCCGGTCGAGAGCCGGCTTGCGCTACATCCGATTTTCAAAAGG
TTCTGAACCGCAGCACTCTTTTCGACTTTCTCGATCTCGGTTTCACCAAA
TTCTCTTTCATTGCTGCGTCGGTGGGACAGCCGGGATTGGATGCCGCTCT
GCCACAATTACCTCAATGCCCTTTCAGACCTTTGTGCTTACTTGTGTTCT
GTCAACGTTCAGAGCCGGCATTGGGTGTCGCAGTTGCCCCCGGACAGTTG
TCCACATTAGCCTCGCGGGCGAACGGTTCCTTCATATCGAACTTTAGCAA
AACAGCTGTCTACGAAGCAGTGTTGGATATTCTCCAGCAACCAAAATTTC
AACCCATCGACGGCCTTTTGTTCCGGGACACTGAAGATGCGATCACACCG
GTGAGCATGGATACGTGTGGAAACAGAGTTGTTGTTGAACGACCAAGTCT
TCCGAAGGTTCTCCCTGCGTTATCGTTTTTGACAATTGACTTCACGGTCT
CACTTGCTGACAGAGCTTGCGATGATGGACCATTTGATTGTACTTTGACC
ATCGCAGAATCAAGGAATTCTACTTTTGTGTTTGAGCTAGAAATGCTTTC
TGTGAAAGCGTGCTTTTAG
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