Gvermi1851.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1851.t1
Unique NameGvermi1851.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:220841..222400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1851Gvermi1851Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 220841..222400 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1851.t1.start1Gvermi1851.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 220841..220843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1851.t1.CDS1Gvermi1851.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 220841..222400 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1851.t1.exon1Gvermi1851.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 220841..222400 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1851.t1.stop1Gvermi1851.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 222398..222400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1851.t1Gvermi1851.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 220841..222400 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1851.t1 ID=Gvermi1851.t1|Name=Gvermi1851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=520bp
MTRSTTVRTNPSIEPTPCRAESLRIPKVSRENALPRTMQVIEDMFGLYDQ
YYGEATLHLIRSGLYSIHSRLAVSGEWPSLVSRGLESLIMTAVTSLEVVV
RDFNVMIQCGHDNTGHFLAGQLAEDAGTFGIVFTLIELLNDVPTNDDTSE
ALQIHLNRWMKYRYRHTARRDKEIRKEVDRLIPLIITSNLPVLHYLDVRD
SVIRTIDGVNELDLIAIAIQACAEAGYEAVGDKWIREITVQLCPFARGIL
ITPTPTPRGVMIGLLGRMFVVNGLSVHGLPTGDRWFAETEAEYCTDAHSR
LSLLTEFRASGSHMIRQPVLKSSIRDVPRWMTQFLHELIRGNHEVVAKSF
KEYQIIRNSDVSPDGPESAFVYKLFLDRLGKSEGAAARAAIIKKVVSMRS
LVLMAARAKDAKDFCVMLAQRIIGTFELARLRVRGPTWEMIIDTNEIGEV
YNETSGTEVPYDLVQFIMDTISTMQGPENKDPTPSGGSMVYLWPMTDVDI
GAHTSWREKPENDDDAYEK*
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spliced messenger RNA

>Gvermi1851.t1 ID=Gvermi1851.t1|Name=Gvermi1851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at ScGOVlb_1622:220841..222400+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCGTAGTACCACAGTGCGTACCAATCCTTCGATTGAACCGACACC
TTGCCGAGCTGAATCGTTACGTATTCCTAAAGTTTCTCGTGAAAATGCAC
TACCCCGCACCATGCAAGTGATTGAGGATATGTTTGGTCTCTATGACCAG
TACTATGGAGAGGCTACTCTGCATCTGATAAGGAGCGGTTTATACAGTAT
TCATTCAAGGCTAGCTGTAAGCGGTGAGTGGCCATCCCTGGTAAGCCGTG
GGTTAGAATCTTTGATTATGACCGCAGTGACCAGTCTCGAAGTTGTCGTT
CGTGACTTCAATGTAATGATCCAGTGTGGACATGACAATACAGGACACTT
TCTCGCTGGACAGCTAGCAGAGGATGCTGGAACATTTGGAATAGTTTTTA
CCTTAATTGAGTTGCTGAACGATGTTCCAACTAATGATGATACTTCAGAG
GCCCTTCAGATTCACCTGAACAGATGGATGAAATACAGGTACCGGCATAC
CGCTCGCCGGGATAAAGAAATTCGAAAAGAAGTTGACCGCTTGATTCCGC
TGATCATAACCAGTAATCTGCCTGTTTTACACTATCTTGATGTTAGAGAC
AGCGTCATTCGCACTATTGATGGTGTCAATGAATTAGACCTCATTGCCAT
TGCCATTCAAGCATGTGCAGAAGCAGGCTATGAAGCCGTGGGTGACAAAT
GGATTCGAGAAATCACTGTTCAGCTCTGTCCCTTCGCACGTGGGATTCTT
ATTACACCCACACCTACTCCAAGAGGTGTTATGATTGGATTACTTGGACG
CATGTTTGTGGTCAACGGTCTTTCGGTTCATGGACTCCCTACTGGAGACA
GATGGTTTGCAGAGACTGAAGCGGAATATTGTACAGATGCACACTCTCGA
TTAAGTCTACTGACAGAATTTAGAGCCAGTGGAAGCCATATGATACGCCA
GCCAGTGCTCAAGTCTAGCATTCGAGATGTTCCAAGATGGATGACCCAAT
TTCTTCATGAACTTATTCGAGGGAATCACGAGGTTGTAGCCAAAAGCTTT
AAAGAGTACCAGATTATCAGGAATTCTGATGTATCTCCGGATGGTCCTGA
AAGTGCTTTTGTATACAAATTGTTTTTGGATCGTCTCGGAAAATCTGAAG
GAGCAGCGGCACGAGCAGCTATCATAAAAAAAGTAGTCTCTATGAGGTCC
TTAGTTTTGATGGCTGCTCGCGCCAAAGACGCCAAGGACTTTTGCGTTAT
GCTTGCTCAAAGGATAATTGGAACATTTGAACTTGCCAGGTTACGTGTGC
GAGGGCCGACGTGGGAAATGATTATTGATACGAATGAGATCGGTGAAGTT
TACAATGAGACATCCGGTACTGAAGTGCCTTATGATCTAGTACAATTCAT
CATGGACACTATAAGTACGATGCAAGGACCAGAAAACAAAGATCCAACAC
CATCAGGAGGTAGTATGGTCTACTTGTGGCCAATGACGGATGTGGATATT
GGAGCTCATACTTCGTGGCGTGAAAAGCCCGAAAATGATGACGATGCATA
TGAGAAATAG
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protein sequence of Gvermi1851.t1

>Gvermi1851.t1 ID=Gvermi1851.t1|Name=Gvermi1851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=520bp
MTRSTTVRTNPSIEPTPCRAESLRIPKVSRENALPRTMQVIEDMFGLYDQ
YYGEATLHLIRSGLYSIHSRLAVSGEWPSLVSRGLESLIMTAVTSLEVVV
RDFNVMIQCGHDNTGHFLAGQLAEDAGTFGIVFTLIELLNDVPTNDDTSE
ALQIHLNRWMKYRYRHTARRDKEIRKEVDRLIPLIITSNLPVLHYLDVRD
SVIRTIDGVNELDLIAIAIQACAEAGYEAVGDKWIREITVQLCPFARGIL
ITPTPTPRGVMIGLLGRMFVVNGLSVHGLPTGDRWFAETEAEYCTDAHSR
LSLLTEFRASGSHMIRQPVLKSSIRDVPRWMTQFLHELIRGNHEVVAKSF
KEYQIIRNSDVSPDGPESAFVYKLFLDRLGKSEGAAARAAIIKKVVSMRS
LVLMAARAKDAKDFCVMLAQRIIGTFELARLRVRGPTWEMIIDTNEIGEV
YNETSGTEVPYDLVQFIMDTISTMQGPENKDPTPSGGSMVYLWPMTDVDI
GAHTSWREKPENDDDAYEK*
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mRNA from alignment at ScGOVlb_1622:220841..222400+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1851.t1 ID=Gvermi1851.t1|Name=Gvermi1851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at ScGOVlb_1622:220841..222400+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCCGTAGTACCACAGTGCGTACCAATCCTTCGATTGAACCGACACC
TTGCCGAGCTGAATCGTTACGTATTCCTAAAGTTTCTCGTGAAAATGCAC
TACCCCGCACCATGCAAGTGATTGAGGATATGTTTGGTCTCTATGACCAG
TACTATGGAGAGGCTACTCTGCATCTGATAAGGAGCGGTTTATACAGTAT
TCATTCAAGGCTAGCTGTAAGCGGTGAGTGGCCATCCCTGGTAAGCCGTG
GGTTAGAATCTTTGATTATGACCGCAGTGACCAGTCTCGAAGTTGTCGTT
CGTGACTTCAATGTAATGATCCAGTGTGGACATGACAATACAGGACACTT
TCTCGCTGGACAGCTAGCAGAGGATGCTGGAACATTTGGAATAGTTTTTA
CCTTAATTGAGTTGCTGAACGATGTTCCAACTAATGATGATACTTCAGAG
GCCCTTCAGATTCACCTGAACAGATGGATGAAATACAGGTACCGGCATAC
CGCTCGCCGGGATAAAGAAATTCGAAAAGAAGTTGACCGCTTGATTCCGC
TGATCATAACCAGTAATCTGCCTGTTTTACACTATCTTGATGTTAGAGAC
AGCGTCATTCGCACTATTGATGGTGTCAATGAATTAGACCTCATTGCCAT
TGCCATTCAAGCATGTGCAGAAGCAGGCTATGAAGCCGTGGGTGACAAAT
GGATTCGAGAAATCACTGTTCAGCTCTGTCCCTTCGCACGTGGGATTCTT
ATTACACCCACACCTACTCCAAGAGGTGTTATGATTGGATTACTTGGACG
CATGTTTGTGGTCAACGGTCTTTCGGTTCATGGACTCCCTACTGGAGACA
GATGGTTTGCAGAGACTGAAGCGGAATATTGTACAGATGCACACTCTCGA
TTAAGTCTACTGACAGAATTTAGAGCCAGTGGAAGCCATATGATACGCCA
GCCAGTGCTCAAGTCTAGCATTCGAGATGTTCCAAGATGGATGACCCAAT
TTCTTCATGAACTTATTCGAGGGAATCACGAGGTTGTAGCCAAAAGCTTT
AAAGAGTACCAGATTATCAGGAATTCTGATGTATCTCCGGATGGTCCTGA
AAGTGCTTTTGTATACAAATTGTTTTTGGATCGTCTCGGAAAATCTGAAG
GAGCAGCGGCACGAGCAGCTATCATAAAAAAAGTAGTCTCTATGAGGTCC
TTAGTTTTGATGGCTGCTCGCGCCAAAGACGCCAAGGACTTTTGCGTTAT
GCTTGCTCAAAGGATAATTGGAACATTTGAACTTGCCAGGTTACGTGTGC
GAGGGCCGACGTGGGAAATGATTATTGATACGAATGAGATCGGTGAAGTT
TACAATGAGACATCCGGTACTGAAGTGCCTTATGATCTAGTACAATTCAT
CATGGACACTATAAGTACGATGCAAGGACCAGAAAACAAAGATCCAACAC
CATCAGGAGGTAGTATGGTCTACTTGTGGCCAATGACGGATGTGGATATT
GGAGCTCATACTTCGTGGCGTGAAAAGCCCGAAAATGATGACGATGCATA
TGAGAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:220841..222400+

>Gvermi1851.t1 ID=Gvermi1851.t1|Name=Gvermi1851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1560bp|location=Sequence derived from alignment at ScGOVlb_1622:220841..222400+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCCGTAGTACCACAGTGCGTACCAATCCTTCGATTGAACCGACACC
TTGCCGAGCTGAATCGTTACGTATTCCTAAAGTTTCTCGTGAAAATGCAC
TACCCCGCACCATGCAAGTGATTGAGGATATGTTTGGTCTCTATGACCAG
TACTATGGAGAGGCTACTCTGCATCTGATAAGGAGCGGTTTATACAGTAT
TCATTCAAGGCTAGCTGTAAGCGGTGAGTGGCCATCCCTGGTAAGCCGTG
GGTTAGAATCTTTGATTATGACCGCAGTGACCAGTCTCGAAGTTGTCGTT
CGTGACTTCAATGTAATGATCCAGTGTGGACATGACAATACAGGACACTT
TCTCGCTGGACAGCTAGCAGAGGATGCTGGAACATTTGGAATAGTTTTTA
CCTTAATTGAGTTGCTGAACGATGTTCCAACTAATGATGATACTTCAGAG
GCCCTTCAGATTCACCTGAACAGATGGATGAAATACAGGTACCGGCATAC
CGCTCGCCGGGATAAAGAAATTCGAAAAGAAGTTGACCGCTTGATTCCGC
TGATCATAACCAGTAATCTGCCTGTTTTACACTATCTTGATGTTAGAGAC
AGCGTCATTCGCACTATTGATGGTGTCAATGAATTAGACCTCATTGCCAT
TGCCATTCAAGCATGTGCAGAAGCAGGCTATGAAGCCGTGGGTGACAAAT
GGATTCGAGAAATCACTGTTCAGCTCTGTCCCTTCGCACGTGGGATTCTT
ATTACACCCACACCTACTCCAAGAGGTGTTATGATTGGATTACTTGGACG
CATGTTTGTGGTCAACGGTCTTTCGGTTCATGGACTCCCTACTGGAGACA
GATGGTTTGCAGAGACTGAAGCGGAATATTGTACAGATGCACACTCTCGA
TTAAGTCTACTGACAGAATTTAGAGCCAGTGGAAGCCATATGATACGCCA
GCCAGTGCTCAAGTCTAGCATTCGAGATGTTCCAAGATGGATGACCCAAT
TTCTTCATGAACTTATTCGAGGGAATCACGAGGTTGTAGCCAAAAGCTTT
AAAGAGTACCAGATTATCAGGAATTCTGATGTATCTCCGGATGGTCCTGA
AAGTGCTTTTGTATACAAATTGTTTTTGGATCGTCTCGGAAAATCTGAAG
GAGCAGCGGCACGAGCAGCTATCATAAAAAAAGTAGTCTCTATGAGGTCC
TTAGTTTTGATGGCTGCTCGCGCCAAAGACGCCAAGGACTTTTGCGTTAT
GCTTGCTCAAAGGATAATTGGAACATTTGAACTTGCCAGGTTACGTGTGC
GAGGGCCGACGTGGGAAATGATTATTGATACGAATGAGATCGGTGAAGTT
TACAATGAGACATCCGGTACTGAAGTGCCTTATGATCTAGTACAATTCAT
CATGGACACTATAAGTACGATGCAAGGACCAGAAAACAAAGATCCAACAC
CATCAGGAGGTAGTATGGTCTACTTGTGGCCAATGACGGATGTGGATATT
GGAGCTCATACTTCGTGGCGTGAAAAGCCCGAAAATGATGACGATGCATA
TGAGAAATAG
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