Gvermi1830.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1830.t1
Unique NameGvermi1830.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_895contigScGOVlb_895:1482..2015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1830Gvermi1830Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_895 1482..2015 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1830.t1.stop1Gvermi1830.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_895 1482..1484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1830.t1.CDS1Gvermi1830.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_895 1482..2015 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1830.t1.exon1Gvermi1830.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_895 1482..2015 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1830.t1.start1Gvermi1830.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_895 2013..2015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1830.t1Gvermi1830.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_895 1482..2015 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1830.t1 ID=Gvermi1830.t1|Name=Gvermi1830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=178bp
MDAHRLGLESLVDLSSAPKCRELTAKTVLAPGSQLLGTIVLLIQCSKSTK
NDGMTDMELDHIGVMHRLATTIVANCLETLRQLGPACTSAALQELTDLTC
EFTLQALVLDLVDARRKPHEAAVAAKCLSVLCRWSPECKERVLDMDASRH
VQSAQQQGCRHDVLRQECTKLMRDLCQ*
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spliced messenger RNA

>Gvermi1830.t1 ID=Gvermi1830.t1|Name=Gvermi1830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp|location=Sequence derived from alignment at ScGOVlb_895:1482..2015- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTCACCGCCTCGGCCTGGAAAGTCTGGTCGACCTCTCGTCCGC
GCCCAAGTGCCGCGAGCTCACCGCCAAGACGGTCCTGGCACCCGGCAGCC
AACTCCTGGGAACCATTGTTTTGTTGATTCAGTGCTCGAAATCAACCAAG
AATGACGGAATGACCGACATGGAACTCGACCACATTGGCGTCATGCACCG
CTTGGCCACGACCATTGTGGCCAATTGCCTCGAGACGTTGCGCCAGCTGG
GCCCAGCCTGCACGAGCGCCGCGCTGCAAGAGCTGACGGACCTGACGTGC
GAATTTACCCTGCAAGCTCTGGTCCTCGACTTGGTGGACGCCCGCCGCAA
GCCCCACGAGGCGGCGGTGGCGGCCAAGTGCTTGAGCGTGCTGTGCCGGT
GGTCGCCGGAGTGCAAGGAACGCGTCTTGGACATGGATGCCTCCCGCCAC
GTCCAATCGGCCCAGCAGCAAGGGTGCAGGCACGACGTTTTGCGTCAGGA
ATGCACCAAGCTCATGCGCGACCTGTGTCAGTAG
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protein sequence of Gvermi1830.t1

>Gvermi1830.t1 ID=Gvermi1830.t1|Name=Gvermi1830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=178bp
MDAHRLGLESLVDLSSAPKCRELTAKTVLAPGSQLLGTIVLLIQCSKSTK
NDGMTDMELDHIGVMHRLATTIVANCLETLRQLGPACTSAALQELTDLTC
EFTLQALVLDLVDARRKPHEAAVAAKCLSVLCRWSPECKERVLDMDASRH
VQSAQQQGCRHDVLRQECTKLMRDLCQ*
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mRNA from alignment at ScGOVlb_895:1482..2015-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1830.t1 ID=Gvermi1830.t1|Name=Gvermi1830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp|location=Sequence derived from alignment at ScGOVlb_895:1482..2015- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCTCACCGCCTCGGCCTGGAAAGTCTGGTCGACCTCTCGTCCGC
GCCCAAGTGCCGCGAGCTCACCGCCAAGACGGTCCTGGCACCCGGCAGCC
AACTCCTGGGAACCATTGTTTTGTTGATTCAGTGCTCGAAATCAACCAAG
AATGACGGAATGACCGACATGGAACTCGACCACATTGGCGTCATGCACCG
CTTGGCCACGACCATTGTGGCCAATTGCCTCGAGACGTTGCGCCAGCTGG
GCCCAGCCTGCACGAGCGCCGCGCTGCAAGAGCTGACGGACCTGACGTGC
GAATTTACCCTGCAAGCTCTGGTCCTCGACTTGGTGGACGCCCGCCGCAA
GCCCCACGAGGCGGCGGTGGCGGCCAAGTGCTTGAGCGTGCTGTGCCGGT
GGTCGCCGGAGTGCAAGGAACGCGTCTTGGACATGGATGCCTCCCGCCAC
GTCCAATCGGCCCAGCAGCAAGGGTGCAGGCACGACGTTTTGCGTCAGGA
ATGCACCAAGCTCATGCGCGACCTGTGTCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_895:1482..2015-

>Gvermi1830.t1 ID=Gvermi1830.t1|Name=Gvermi1830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=534bp|location=Sequence derived from alignment at ScGOVlb_895:1482..2015- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCTCACCGCCTCGGCCTGGAAAGTCTGGTCGACCTCTCGTCCGC
GCCCAAGTGCCGCGAGCTCACCGCCAAGACGGTCCTGGCACCCGGCAGCC
AACTCCTGGGAACCATTGTTTTGTTGATTCAGTGCTCGAAATCAACCAAG
AATGACGGAATGACCGACATGGAACTCGACCACATTGGCGTCATGCACCG
CTTGGCCACGACCATTGTGGCCAATTGCCTCGAGACGTTGCGCCAGCTGG
GCCCAGCCTGCACGAGCGCCGCGCTGCAAGAGCTGACGGACCTGACGTGC
GAATTTACCCTGCAAGCTCTGGTCCTCGACTTGGTGGACGCCCGCCGCAA
GCCCCACGAGGCGGCGGTGGCGGCCAAGTGCTTGAGCGTGCTGTGCCGGT
GGTCGCCGGAGTGCAAGGAACGCGTCTTGGACATGGATGCCTCCCGCCAC
GTCCAATCGGCCCAGCAGCAAGGGTGCAGGCACGACGTTTTGCGTCAGGA
ATGCACCAAGCTCATGCGCGACCTGTGTCAGTAG
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